Wall clock time and date at job start Tue Mar 31 2020 06:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 H 1.08997 * 109.49787 * 304.93699 * 3 2 1 5 5 C 1.53195 * 109.49747 * 65.00133 * 3 2 1 6 6 N 1.46926 * 108.77637 * 174.58816 * 5 3 2 7 7 C 1.34780 * 120.62825 * 126.11758 * 6 5 3 8 8 O 1.21614 * 120.00321 * 353.78583 * 7 6 5 9 9 C 1.47375 * 119.99676 * 173.78267 * 7 6 5 10 10 C 1.47024 * 127.19241 * 150.56289 * 9 7 6 11 11 C 1.34174 * 105.95922 * 180.02562 * 10 9 7 12 12 O 1.34222 * 109.11933 * 0.02562 * 11 10 9 13 13 C 1.33649 * 110.90976 * 359.73043 * 12 11 10 14 14 C 1.46924 * 118.73826 * 306.38810 * 6 5 3 15 15 C 1.53192 * 108.77307 * 53.60767 * 14 6 5 16 16 C 1.53034 * 109.49928 * 184.83624 * 3 2 1 17 17 H 1.09003 * 109.46092 * 58.68252 * 16 3 2 18 18 N 1.46502 * 109.46207 * 298.70629 * 16 3 2 19 19 C 1.36942 * 119.99855 * 154.99786 * 18 16 3 20 20 H 1.07999 * 120.00242 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99816 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99938 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99870 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47233 * 60.00225 * 23 21 19 25 25 H 1.48500 * 109.46987 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47224 * 299.99864 * 23 21 19 27 27 H 1.09001 * 109.47333 * 299.99739 * 1 2 3 28 28 H 1.08999 * 109.47258 * 59.99768 * 1 2 3 29 29 H 1.09000 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47333 * 240.00261 * 2 1 3 31 31 H 1.08999 * 109.47258 * 120.00231 * 2 1 3 32 32 H 1.08998 * 109.58640 * 54.79396 * 5 3 2 33 33 H 1.09000 * 109.70412 * 294.44580 * 5 3 2 34 34 H 1.07999 * 127.01831 * 359.97438 * 10 9 7 35 35 H 1.07991 * 125.44260 * 180.02562 * 11 10 9 36 36 H 1.07998 * 125.80179 * 180.28955 * 13 12 11 37 37 H 1.08992 * 109.58517 * 173.39649 * 14 6 5 38 38 H 1.09002 * 109.58650 * 293.82429 * 14 6 5 39 39 H 1.09000 * 109.49554 * 185.41140 * 15 14 6 40 40 H 1.09005 * 109.49406 * 65.31571 * 15 14 6 41 41 H 0.96993 * 119.99677 * 334.99577 * 18 16 3 42 42 H 0.97007 * 119.99910 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2414 3.4657 1.3494 7 6 1.4806 4.5585 1.5579 8 8 0.2695 4.4569 1.6019 9 6 2.1164 5.8765 1.7327 10 6 1.5529 7.1885 1.3825 11 6 2.4855 8.0924 1.7193 12 8 3.5490 7.4558 2.2344 13 6 3.3490 6.1345 2.2572 14 6 3.6921 3.5899 1.1523 15 6 4.0740 2.8880 -0.1547 16 6 3.5655 1.4450 -0.1216 17 1 3.8574 0.9362 -1.0404 18 7 4.1479 0.7485 1.0281 19 6 5.3861 0.1727 0.9245 20 1 5.9334 0.2324 -0.0046 21 6 5.9382 -0.4867 2.0141 22 7 5.2714 -0.5590 3.1466 23 14 7.6275 -1.2716 1.8730 24 1 8.6310 -0.2295 1.5381 25 1 7.9868 -1.9085 3.1654 26 1 7.6071 -2.3012 0.8031 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.9907 1.5397 2.1547 33 1 0.5497 2.2172 1.3565 34 1 0.5860 7.3846 0.9430 35 1 2.3950 9.1614 1.5958 36 1 4.0457 5.3964 2.6262 37 1 3.9640 4.6438 1.0941 38 1 4.2156 3.1209 1.9854 39 1 5.1584 2.8892 -0.2649 40 1 3.6218 3.4139 -0.9956 41 1 3.6566 0.6953 1.8627 42 1 5.6571 -1.0202 3.9079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037799898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:17 Heat of formation + Delta-G solvation = -23.577333 kcal Electronic energy + Delta-G solvation = -24349.919093 eV Core-core repulsion = 20910.314832 eV Total energy + Delta-G solvation = -3439.604261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -43.52709 -41.23898 -39.12563 -35.98482 -35.40422 -33.76666 -33.39450 -31.26303 -30.93206 -29.62605 -26.93004 -25.50513 -25.13186 -23.76403 -22.44501 -22.06138 -20.96830 -19.97860 -19.25993 -18.45147 -17.72361 -17.08064 -16.97663 -16.57893 -16.09913 -15.90777 -15.59092 -15.34264 -14.82808 -14.79221 -14.54403 -14.35923 -14.08400 -13.85247 -13.57264 -13.27998 -13.06633 -12.93000 -12.79422 -12.65145 -12.37076 -12.16674 -12.10906 -11.83061 -11.58888 -11.44967 -11.16602 -11.09904 -10.85289 -10.72750 -9.73644 -9.59343 -8.90195 -7.86388 -5.12612 0.37814 1.15658 1.52003 1.52959 1.58650 1.83052 2.08417 2.22510 2.61823 3.46730 3.48422 3.76232 3.80372 3.86325 3.95740 4.06231 4.08010 4.23853 4.35197 4.43015 4.45971 4.54128 4.58632 4.68513 4.75047 4.81939 4.86640 4.96161 5.00157 5.04546 5.16910 5.21950 5.24843 5.29426 5.36050 5.40444 5.51620 5.61790 5.65402 6.00940 6.35004 6.39173 7.07368 7.43160 8.18366 8.42998 9.36568 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014875 B = 0.005203 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.917426 B = 5379.875522 C = 6721.580916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.081 0.919 5 C 0.125 3.875 6 N -0.595 5.595 7 C 0.581 3.419 8 O -0.586 6.586 9 C -0.258 4.258 10 C -0.195 4.195 11 C -0.018 4.018 12 O -0.176 6.176 13 C 0.025 3.975 14 C 0.106 3.894 15 C -0.142 4.142 16 C 0.173 3.827 17 H 0.048 0.952 18 N -0.723 5.723 19 C -0.227 4.227 20 H 0.075 0.925 21 C -0.069 4.069 22 N -0.968 5.968 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.303 1.303 26 H -0.284 1.284 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.160 0.840 35 H 0.253 0.747 36 H 0.230 0.770 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.374 0.626 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 14.833 -5.937 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.099 0.901 5 C 0.003 3.997 6 N -0.326 5.326 7 C 0.372 3.628 8 O -0.468 6.468 9 C -0.263 4.263 10 C -0.214 4.214 11 C -0.083 4.083 12 O -0.070 6.070 13 C -0.045 4.045 14 C -0.016 4.016 15 C -0.183 4.183 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.364 5.364 19 C -0.359 4.359 20 H 0.093 0.907 21 C -0.262 4.262 22 N -0.620 5.620 23 Si 0.792 3.208 24 H -0.205 1.205 25 H -0.230 1.230 26 H -0.211 1.211 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.178 0.822 35 H 0.269 0.731 36 H 0.246 0.754 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.207 0.793 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.281 14.849 -5.896 16.826 hybrid contribution 0.581 -1.118 0.503 1.357 sum -4.701 13.731 -5.392 15.482 Atomic orbital electron populations 1.21788 0.94837 1.01945 1.01805 1.21339 0.96006 0.95079 1.01883 1.21651 0.95975 0.96484 0.97058 0.90093 1.21557 0.98629 0.81570 0.97958 1.48005 1.08973 1.06069 1.69544 1.17742 0.85790 0.83637 0.75640 1.90707 1.15245 1.86668 1.54176 1.21503 0.97731 0.94280 1.12771 1.22932 1.02333 0.89512 1.06661 1.24712 0.84055 0.99992 0.99572 1.83857 1.40554 1.18524 1.64105 1.25003 0.96524 0.83250 0.99689 1.22102 0.78483 1.01997 0.99014 1.22399 1.01609 0.97734 0.96552 1.20427 0.90899 0.91443 0.90845 0.93427 1.42556 1.18219 1.64300 1.11328 1.19519 0.94222 1.25399 0.96761 0.90734 1.25337 1.01638 1.03119 0.96070 1.69792 1.39563 1.49765 1.02830 0.85384 0.81115 0.78437 0.75819 1.20501 1.22961 1.21056 0.93269 0.91969 0.92046 0.91860 0.93494 0.92798 0.89770 0.82211 0.73119 0.75419 0.87680 0.91748 0.90992 0.91210 0.79254 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 9.67 71.98 0.70 -3.21 16 2 C -0.10 -3.35 5.19 30.59 0.16 -3.19 16 3 C -0.09 -2.96 2.14 -10.72 -0.02 -2.99 16 4 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 5 C 0.13 4.33 5.03 86.36 0.43 4.77 16 6 N -0.60 -19.48 2.97 -822.84 -2.45 -21.92 16 7 C 0.58 19.81 7.65 86.65 0.66 20.47 16 8 O -0.59 -23.71 16.50 -4.07 -0.07 -23.78 16 9 C -0.26 -7.09 5.72 -18.99 -0.11 -7.19 16 10 C -0.19 -4.31 11.12 23.65 0.26 -4.05 16 11 C -0.02 -0.28 12.03 66.89 0.80 0.52 16 12 O -0.18 -3.43 10.52 4.43 0.05 -3.38 16 13 C 0.03 0.57 9.72 67.39 0.66 1.22 16 14 C 0.11 3.18 5.00 86.36 0.43 3.61 16 15 C -0.14 -4.42 5.78 30.67 0.18 -4.24 16 16 C 0.17 6.22 2.53 45.02 0.11 6.33 16 17 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 18 N -0.72 -32.70 3.72 -322.82 -1.20 -33.90 16 19 C -0.23 -11.56 9.93 84.03 0.83 -10.73 16 20 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 22 N -0.97 -56.56 13.06 21.65 0.28 -56.28 16 23 Si 0.96 44.34 29.55 68.60 2.03 46.37 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H 0.05 1.35 6.70 -2.39 -0.02 1.34 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.78 7.69 -2.39 -0.02 1.77 16 32 H 0.05 2.10 6.64 -2.39 -0.02 2.09 16 33 H 0.08 2.97 5.72 -2.39 -0.01 2.95 16 34 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.25 1.35 8.06 -2.92 -0.02 1.33 16 36 H 0.23 4.42 6.45 -2.91 -0.02 4.40 16 37 H 0.11 2.57 4.24 -2.39 -0.01 2.56 16 38 H 0.06 2.26 7.74 -2.39 -0.02 2.24 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.37 18.55 5.94 -92.71 -0.55 18.00 16 42 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -66.61 334.96 4.69 -61.91 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.48 Total: 32.95 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.57 Total: -1.96 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.36 Total: -112.10 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.02 Total: -27.16 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.61 4.69 -61.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037799898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.337 kcal (2) G-P(sol) polarization free energy of solvation -66.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds