Wall clock time and date at job start Tue Mar 31 2020 06:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 H 1.09007 * 109.87290 * 55.76344 * 3 2 1 5 5 C 1.54320 * 109.87969 * 294.74970 * 3 2 1 6 6 H 1.08994 * 110.72452 * 336.75128 * 5 3 2 7 7 N 1.46501 * 110.71944 * 99.84973 * 5 3 2 8 8 C 1.34780 * 119.99876 * 204.99827 * 7 5 3 9 9 O 1.21692 * 120.00151 * 359.97438 * 8 7 5 10 10 C 1.46655 * 119.99818 * 179.97438 * 8 7 5 11 11 C 1.36548 * 125.98903 * 179.97438 * 10 8 7 12 12 C 1.40357 * 106.70994 * 179.97438 * 11 10 8 13 13 C 1.35122 * 107.11604 * 0.02562 * 12 11 10 14 14 C 1.50707 * 125.61649 * 180.02562 * 13 12 11 15 15 O 1.33931 * 108.77013 * 359.77219 * 13 12 11 16 16 C 1.55160 * 102.94098 * 218.38437 * 5 3 2 17 17 C 1.54914 * 101.57844 * 35.50380 * 16 5 3 18 18 N 1.47019 * 109.88208 * 176.78038 * 3 2 1 19 19 C 1.36933 * 125.64842 * 298.30920 * 18 3 2 20 20 H 1.07990 * 120.00586 * 345.92132 * 19 18 3 21 21 C 1.38816 * 119.99745 * 165.91645 * 19 18 3 22 22 N 1.31620 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46488 * 120.00469 * 23 21 19 26 26 H 1.48494 * 109.47470 * 240.00062 * 23 21 19 27 27 H 1.09005 * 109.47288 * 185.71514 * 1 2 3 28 28 H 1.08999 * 109.47459 * 305.71933 * 1 2 3 29 29 H 1.08998 * 109.47332 * 65.72117 * 1 2 3 30 30 H 1.09001 * 109.47418 * 239.99744 * 2 1 3 31 31 H 1.09000 * 109.46845 * 119.99978 * 2 1 3 32 32 H 0.96995 * 120.00317 * 24.99922 * 7 5 3 33 33 H 1.08000 * 126.64248 * 0.02562 * 11 10 8 34 34 H 1.08010 * 126.44070 * 180.02562 * 12 11 10 35 35 H 1.08999 * 109.47115 * 90.00063 * 14 13 12 36 36 H 1.08992 * 109.47196 * 209.99955 * 14 13 12 37 37 H 1.08996 * 109.47048 * 330.00045 * 14 13 12 38 38 H 1.09000 * 111.00401 * 153.57684 * 16 5 3 39 39 H 1.08998 * 111.00831 * 277.42789 * 16 5 3 40 40 H 1.09008 * 110.36478 * 81.82778 * 17 16 5 41 41 H 1.09002 * 110.36411 * 204.14617 * 17 16 5 42 42 H 0.97001 * 120.00126 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9841 0.8475 5 6 1.6421 2.1398 -1.3179 6 1 1.4679 1.4063 -2.1050 7 7 0.4575 2.9794 -1.1230 8 6 -0.3453 3.2650 -2.1673 9 8 -0.0859 2.8259 -3.2722 10 6 -1.5315 4.1050 -1.9720 11 6 -2.4242 4.4701 -2.9386 12 6 -3.3938 5.2681 -2.3118 13 6 -3.0546 5.3547 -1.0068 14 6 -3.8149 6.1152 0.0491 15 8 -1.9345 4.6488 -0.8049 16 6 2.8872 3.0072 -1.6417 17 6 4.0378 2.0986 -1.1415 18 7 3.5081 1.4537 0.0776 19 6 4.2567 0.9506 1.1080 20 1 3.7858 0.7069 2.0488 21 6 5.6209 0.7538 0.9431 22 7 6.1949 1.0512 -0.2034 23 14 6.6422 0.0681 2.3489 24 1 5.7659 -0.1817 3.5214 25 1 7.2758 -1.2062 1.9245 26 1 7.6967 1.0464 2.7178 27 1 -0.3634 -1.0226 0.1023 28 1 -0.3634 0.5999 0.8343 29 1 -0.3634 0.4225 -0.9367 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.2509 3.3297 -0.2424 33 1 -2.3910 4.1968 -3.9830 34 1 -4.2502 5.7268 -2.7840 35 1 -4.5576 5.4602 0.5046 36 1 -3.1221 6.4661 0.8138 37 1 -4.3150 6.9692 -0.4076 38 1 2.9696 3.1877 -2.7135 39 1 2.8631 3.9468 -1.0897 40 1 4.2827 1.3481 -1.8932 41 1 4.9166 2.6970 -0.9013 42 1 7.1482 0.9140 -0.3185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087494540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:24 Heat of formation + Delta-G solvation = -4.998852 kcal Electronic energy + Delta-G solvation = -23731.477882 eV Core-core repulsion = 20292.679244 eV Total energy + Delta-G solvation = -3438.798638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.82520 -39.59732 -37.66507 -34.19632 -33.38787 -32.73733 -32.20666 -31.65021 -29.13019 -27.62556 -26.29959 -24.45503 -22.78125 -21.85633 -21.61815 -20.41186 -20.16691 -19.69168 -18.00241 -16.86982 -16.59416 -15.99928 -15.53778 -14.79035 -14.53342 -14.25998 -14.02581 -13.75523 -13.52377 -13.48580 -13.25627 -13.12109 -13.02932 -12.68634 -12.18634 -12.02306 -11.93217 -11.66150 -11.16337 -10.91622 -10.84962 -10.62932 -10.48448 -10.39650 -10.17638 -10.06602 -9.95610 -9.72774 -9.65266 -8.83237 -8.61563 -8.50402 -6.81885 -5.75824 -3.12081 0.97575 2.17946 2.49593 3.25311 3.30593 3.38669 3.44667 3.46620 4.40023 4.47932 4.74972 4.76365 5.04607 5.09088 5.25211 5.32994 5.35564 5.49265 5.50707 5.54121 5.66818 5.75764 5.77728 5.80691 5.86381 6.06145 6.20859 6.22574 6.25447 6.41396 6.45829 6.54181 6.65310 6.66864 6.78147 6.94011 7.13465 7.50192 7.58689 7.65714 7.78183 8.21263 8.26512 9.16921 9.78118 10.46152 11.36257 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.003580 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.501153 B = 7819.900100 C = 7989.792137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.136 3.864 6 H 0.098 0.902 7 N -0.701 5.701 8 C 0.600 3.400 9 O -0.523 6.523 10 C -0.072 4.072 11 C -0.123 4.123 12 C -0.224 4.224 13 C 0.013 3.987 14 C -0.078 4.078 15 O -0.161 6.161 16 C -0.157 4.157 17 C 0.173 3.827 18 N -0.594 5.594 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 8.683 -1.082 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.032 3.968 6 H 0.116 0.884 7 N -0.350 5.350 8 C 0.385 3.615 9 O -0.401 6.401 10 C -0.124 4.124 11 C -0.144 4.144 12 C -0.243 4.243 13 C -0.039 4.039 14 C -0.134 4.134 15 O -0.057 6.057 16 C -0.197 4.197 17 C 0.048 3.952 18 N -0.319 5.319 19 C -0.355 4.355 20 H 0.094 0.906 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.177 0.823 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.541 8.255 -1.532 20.353 hybrid contribution 0.360 -0.229 0.896 0.993 sum -18.181 8.026 -0.635 19.884 Atomic orbital electron populations 1.21774 0.97270 1.00521 1.00921 1.22019 0.93548 0.99102 1.02482 1.21074 0.87171 0.93401 0.93101 0.94700 1.22210 0.83054 0.92468 0.99114 0.88442 1.46000 1.26354 1.51464 1.11152 1.16533 0.80369 0.79487 0.85074 1.90877 1.72343 1.52870 1.24040 1.22235 1.00482 1.05560 0.84154 1.21931 0.93520 0.98324 1.00608 1.21566 1.03212 1.06080 0.93477 1.22799 0.87440 0.96912 0.96745 1.20400 0.98599 0.98709 0.95714 1.84019 1.36096 1.51862 1.33770 1.23442 0.96586 0.99127 1.00497 1.21504 0.93138 0.92932 0.87588 1.44523 0.98295 1.68564 1.20514 1.18986 0.89778 1.35844 0.90909 0.90613 1.24905 0.97163 1.00984 0.97025 1.69933 1.10292 1.52894 1.23144 0.86077 0.80225 0.78468 0.81178 1.20449 1.21695 1.21756 0.93622 0.93459 0.93402 0.92284 0.91633 0.76275 0.82290 0.82803 0.89646 0.90111 0.89053 0.91730 0.91931 0.95308 0.90609 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.57 37.16 0.36 -1.90 16 2 C -0.13 -2.48 5.41 -26.73 -0.14 -2.62 16 3 C 0.16 3.22 2.93 -66.96 -0.20 3.02 16 4 H 0.04 0.69 7.72 -51.92 -0.40 0.29 16 5 C 0.14 2.49 2.01 -66.10 -0.13 2.36 16 6 H 0.10 1.91 7.19 -51.93 -0.37 1.54 16 7 N -0.70 -10.92 4.91 -53.34 -0.26 -11.19 16 8 C 0.60 9.69 7.79 -12.86 -0.10 9.59 16 9 O -0.52 -9.96 16.51 5.20 0.09 -9.87 16 10 C -0.07 -1.00 7.13 -36.80 -0.26 -1.26 16 11 C -0.12 -1.50 10.62 -39.39 -0.42 -1.92 16 12 C -0.22 -2.19 10.77 -39.89 -0.43 -2.62 16 13 C 0.01 0.13 7.31 -35.41 -0.26 -0.13 16 14 C -0.08 -0.43 10.41 36.01 0.38 -0.06 16 15 O -0.16 -2.00 10.40 4.99 0.05 -1.95 16 16 C -0.16 -3.09 6.78 -24.58 -0.17 -3.26 16 17 C 0.17 4.18 5.44 -2.35 -0.01 4.17 16 18 N -0.59 -14.69 3.14 -162.31 -0.51 -15.20 16 19 C -0.23 -6.13 9.75 -15.06 -0.15 -6.28 16 20 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 21 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 22 N -0.92 -26.51 10.58 55.49 0.59 -25.92 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.74 7.41 -51.93 -0.38 0.36 16 30 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 1.31 7.90 -51.93 -0.41 0.90 16 32 H 0.40 5.59 8.12 -40.82 -0.33 5.25 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.75 8.08 -51.92 -0.42 0.33 16 41 H 0.08 2.02 6.90 -51.93 -0.36 1.66 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -31.25 348.43 -7.90 -39.15 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.45 Total: 4.08 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.63 Total: -1.11 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.18 Total: -52.30 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.14 Total: -11.82 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.25 -7.90 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087494540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.156 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds