Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47221 * 2 1 4 4 H 1.09007 * 109.87290 * 55.76344 * 3 2 1 5 5 C 1.54320 * 109.87969 * 294.74970 * 3 2 1 6 6 H 1.08994 * 110.72452 * 336.75128 * 5 3 2 7 7 N 1.46501 * 110.71944 * 99.84973 * 5 3 2 8 8 C 1.34780 * 119.99876 * 204.99827 * 7 5 3 9 9 O 1.21692 * 120.00151 * 359.97438 * 8 7 5 10 10 C 1.46655 * 119.99818 * 179.97438 * 8 7 5 11 11 C 1.36548 * 125.98903 * 179.97438 * 10 8 7 12 12 C 1.40357 * 106.70994 * 179.97438 * 11 10 8 13 13 C 1.35122 * 107.11604 * 0.02562 * 12 11 10 14 14 C 1.50707 * 125.61649 * 180.02562 * 13 12 11 15 15 O 1.33931 * 108.77013 * 359.77219 * 13 12 11 16 16 C 1.55160 * 102.94098 * 218.38437 * 5 3 2 17 17 C 1.54914 * 101.57844 * 35.50380 * 16 5 3 18 18 N 1.47019 * 109.88208 * 176.78038 * 3 2 1 19 19 C 1.36933 * 125.64842 * 298.30920 * 18 3 2 20 20 H 1.07990 * 120.00586 * 345.92132 * 19 18 3 21 21 C 1.38816 * 119.99745 * 165.91645 * 19 18 3 22 22 N 1.31620 * 120.00019 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47063 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46488 * 120.00469 * 23 21 19 26 26 H 1.48494 * 109.47470 * 240.00062 * 23 21 19 27 27 H 1.09005 * 109.47288 * 185.71514 * 1 2 3 28 28 H 1.08999 * 109.47459 * 305.71933 * 1 2 3 29 29 H 1.08998 * 109.47332 * 65.72117 * 1 2 3 30 30 H 1.09001 * 109.47418 * 239.99744 * 2 1 3 31 31 H 1.09000 * 109.46845 * 119.99978 * 2 1 3 32 32 H 0.96995 * 120.00317 * 24.99922 * 7 5 3 33 33 H 1.08000 * 126.64248 * 0.02562 * 11 10 8 34 34 H 1.08010 * 126.44070 * 180.02562 * 12 11 10 35 35 H 1.08999 * 109.47115 * 90.00063 * 14 13 12 36 36 H 1.08992 * 109.47196 * 209.99955 * 14 13 12 37 37 H 1.08996 * 109.47048 * 330.00045 * 14 13 12 38 38 H 1.09000 * 111.00401 * 153.57684 * 16 5 3 39 39 H 1.08998 * 111.00831 * 277.42789 * 16 5 3 40 40 H 1.09008 * 110.36478 * 81.82778 * 17 16 5 41 41 H 1.09002 * 110.36411 * 204.14617 * 17 16 5 42 42 H 0.97001 * 120.00126 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9841 0.8475 5 6 1.6421 2.1398 -1.3179 6 1 1.4679 1.4063 -2.1050 7 7 0.4575 2.9794 -1.1230 8 6 -0.3453 3.2650 -2.1673 9 8 -0.0859 2.8259 -3.2722 10 6 -1.5315 4.1050 -1.9720 11 6 -2.4242 4.4701 -2.9386 12 6 -3.3938 5.2681 -2.3118 13 6 -3.0546 5.3547 -1.0068 14 6 -3.8149 6.1152 0.0491 15 8 -1.9345 4.6488 -0.8049 16 6 2.8872 3.0072 -1.6417 17 6 4.0378 2.0986 -1.1415 18 7 3.5081 1.4537 0.0776 19 6 4.2567 0.9506 1.1080 20 1 3.7858 0.7069 2.0488 21 6 5.6209 0.7538 0.9431 22 7 6.1949 1.0512 -0.2034 23 14 6.6422 0.0681 2.3489 24 1 5.7659 -0.1817 3.5214 25 1 7.2758 -1.2062 1.9245 26 1 7.6967 1.0464 2.7178 27 1 -0.3634 -1.0226 0.1023 28 1 -0.3634 0.5999 0.8343 29 1 -0.3634 0.4225 -0.9367 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.2509 3.3297 -0.2424 33 1 -2.3910 4.1968 -3.9830 34 1 -4.2502 5.7268 -2.7840 35 1 -4.5576 5.4602 0.5046 36 1 -3.1221 6.4661 0.8138 37 1 -4.3150 6.9692 -0.4076 38 1 2.9696 3.1877 -2.7135 39 1 2.8631 3.9468 -1.0897 40 1 4.2827 1.3481 -1.8932 41 1 4.9166 2.6970 -0.9013 42 1 7.1482 0.9140 -0.3185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087494540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -24.495836 kcal Electronic energy + Delta-G solvation = -23732.323335 eV Core-core repulsion = 20292.679244 eV Total energy + Delta-G solvation = -3439.644091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.69431 -41.00263 -39.26223 -35.75090 -34.48748 -34.11601 -33.54429 -32.85802 -30.92181 -28.76697 -27.65483 -26.29054 -24.09866 -23.06810 -22.60194 -22.07025 -21.54079 -21.02430 -19.22935 -18.77264 -17.57399 -17.43957 -16.72939 -16.45887 -15.91088 -15.70301 -15.58790 -15.31198 -14.85550 -14.41009 -14.09049 -14.01670 -13.94074 -13.82563 -13.66953 -13.58150 -13.26622 -12.91567 -12.76474 -12.72062 -12.66753 -12.26181 -12.06148 -12.01798 -11.94327 -11.59211 -11.45268 -11.32914 -11.03218 -10.69794 -10.17950 -9.44927 -8.84713 -7.85786 -5.23904 0.00103 1.36319 1.47226 1.48288 1.56936 1.58815 2.09171 2.10910 2.51214 3.34093 3.49798 3.66574 3.79147 3.86268 3.92630 3.97300 4.15002 4.33297 4.37814 4.55392 4.56584 4.59789 4.63080 4.70404 4.75550 4.75890 4.80371 4.95773 4.98997 5.08862 5.15609 5.15937 5.23830 5.41299 5.47319 5.48272 5.54467 5.60334 5.70233 5.87558 6.21992 6.42437 6.98510 7.07958 7.75034 8.42835 9.25770 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.003580 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.501153 B = 7819.900100 C = 7989.792137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.159 3.841 4 H 0.049 0.951 5 C 0.154 3.846 6 H 0.085 0.915 7 N -0.692 5.692 8 C 0.604 3.396 9 O -0.560 6.560 10 C -0.108 4.108 11 C -0.119 4.119 12 C -0.229 4.229 13 C 0.024 3.976 14 C -0.079 4.079 15 O -0.171 6.171 16 C -0.142 4.142 17 C 0.182 3.818 18 N -0.613 5.613 19 C -0.232 4.232 20 H 0.083 0.917 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.295 1.295 26 H -0.293 1.293 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.413 0.587 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.072 0.928 40 H -0.003 1.003 41 H 0.044 0.956 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 9.886 0.314 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.052 3.948 4 H 0.067 0.933 5 C 0.049 3.951 6 H 0.103 0.897 7 N -0.341 5.341 8 C 0.391 3.609 9 O -0.441 6.441 10 C -0.159 4.159 11 C -0.140 4.140 12 C -0.248 4.248 13 C -0.029 4.029 14 C -0.134 4.134 15 O -0.068 6.068 16 C -0.182 4.182 17 C 0.056 3.944 18 N -0.338 5.338 19 C -0.361 4.361 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.222 1.222 26 H -0.220 1.220 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.250 0.750 33 H 0.179 0.821 34 H 0.203 0.797 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.062 0.938 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.698 9.471 -0.104 23.676 hybrid contribution 1.183 -0.519 0.469 1.374 sum -20.515 8.952 0.364 22.386 Atomic orbital electron populations 1.21651 0.94095 1.01994 1.01455 1.21902 0.96219 0.97559 1.00864 1.21232 0.84657 0.94611 0.94316 0.93312 1.21770 0.83578 0.92052 0.97719 0.89734 1.45754 1.25390 1.51134 1.11843 1.16758 0.80716 0.79050 0.84328 1.90851 1.73487 1.54446 1.25293 1.21722 1.00874 1.07886 0.85445 1.22224 0.93472 0.97631 1.00628 1.21934 1.03641 1.05791 0.93430 1.23741 0.86046 0.95073 0.98014 1.20670 0.98571 0.99286 0.94919 1.84004 1.37263 1.52370 1.33174 1.23259 0.95440 0.98697 1.00812 1.21208 0.93786 0.92373 0.87029 1.44754 1.00381 1.68636 1.20025 1.19338 0.90237 1.34773 0.91737 0.89963 1.25709 0.98450 1.02002 0.99407 1.70138 1.10032 1.54433 1.25119 0.85051 0.78532 0.77139 0.78853 1.18777 1.22230 1.21989 0.91950 0.91843 0.93626 0.94235 0.92931 0.75006 0.82080 0.79697 0.87957 0.89657 0.86540 0.91092 0.90913 0.98445 0.93787 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.57 71.98 0.69 -3.18 16 2 C -0.13 -4.70 5.41 30.59 0.17 -4.54 16 3 C 0.16 6.34 2.93 45.34 0.13 6.47 16 4 H 0.05 1.85 7.72 -2.38 -0.02 1.83 16 5 C 0.15 5.67 2.01 46.18 0.09 5.76 16 6 H 0.08 3.38 7.19 -2.39 -0.02 3.37 16 7 N -0.69 -21.00 4.91 -440.89 -2.16 -23.16 16 8 C 0.60 19.22 7.79 86.44 0.67 19.89 16 9 O -0.56 -21.48 16.51 -4.32 -0.07 -21.55 16 10 C -0.11 -2.86 7.13 24.07 0.17 -2.69 16 11 C -0.12 -2.70 10.62 22.39 0.24 -2.46 16 12 C -0.23 -3.74 10.77 22.07 0.24 -3.50 16 13 C 0.02 0.39 7.31 24.97 0.18 0.57 16 14 C -0.08 -0.54 10.41 71.24 0.74 0.20 16 15 O -0.17 -3.88 10.40 -5.05 -0.05 -3.93 16 16 C -0.14 -5.71 6.78 31.99 0.22 -5.49 16 17 C 0.18 9.15 5.44 86.80 0.47 9.63 16 18 N -0.61 -30.96 3.14 -667.44 -2.09 -33.06 16 19 C -0.23 -12.69 9.75 84.04 0.82 -11.87 16 20 H 0.08 4.30 7.83 -2.92 -0.02 4.28 16 21 C -0.06 -3.51 5.47 84.86 0.46 -3.05 16 22 N -0.95 -57.05 10.58 21.65 0.23 -56.82 16 23 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.34 7.41 -2.39 -0.02 1.33 16 30 H 0.04 1.61 8.07 -2.39 -0.02 1.59 16 31 H 0.05 2.08 7.90 -2.39 -0.02 2.07 16 32 H 0.41 10.83 8.12 -92.71 -0.75 10.08 16 33 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 34 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.00 -0.14 8.08 -2.38 -0.02 -0.16 16 41 H 0.04 2.47 6.90 -2.39 -0.02 2.45 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -70.01 348.43 3.44 -66.57 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.26 Total: 18.75 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.30 Total: 5.74 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -4.03 Total: -113.04 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.12 Total: -25.49 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.01 3.44 -66.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087494540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.077 kcal (2) G-P(sol) polarization free energy of solvation -70.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds