Wall clock time and date at job start Tue Mar 31 2020 06:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47087 * 2 1 4 4 H 1.08999 * 110.00122 * 56.15517 * 3 2 1 5 5 C 1.54327 * 109.88353 * 295.05713 * 3 2 1 6 6 H 1.09006 * 110.71476 * 336.93379 * 5 3 2 7 7 N 1.46501 * 110.72046 * 100.02476 * 5 3 2 8 8 C 1.34773 * 119.99884 * 202.56054 * 7 5 3 9 9 O 1.21280 * 120.00048 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99814 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47158 * 179.97438 * 10 8 7 12 12 C 1.41380 * 126.58021 * 269.71357 * 11 10 8 13 13 C 1.34521 * 106.83961 * 180.26332 * 12 11 10 14 14 O 1.34297 * 108.41830 * 359.97438 * 13 12 11 15 15 C 1.34302 * 109.48019 * 0.02562 * 14 13 12 16 16 C 1.55150 * 103.10417 * 218.48090 * 5 3 2 17 17 C 1.54916 * 101.58295 * 35.41003 * 16 5 3 18 18 N 1.47323 * 110.06523 * 177.32501 * 3 2 1 19 19 C 1.36932 * 125.61447 * 298.32358 * 18 3 2 20 20 H 1.08000 * 120.00598 * 347.94261 * 19 18 3 21 21 C 1.38815 * 119.99884 * 167.94678 * 19 18 3 22 22 N 1.31618 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47742 * 59.99255 * 23 21 19 25 25 H 1.48502 * 109.47136 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46933 * 299.99389 * 23 21 19 27 27 H 1.09004 * 109.47513 * 305.50236 * 1 2 3 28 28 H 1.09005 * 109.46501 * 65.49870 * 1 2 3 29 29 H 1.08996 * 109.46951 * 185.49968 * 1 2 3 30 30 H 1.08992 * 109.47472 * 239.99719 * 2 1 3 31 31 H 1.09004 * 109.46857 * 119.99398 * 2 1 3 32 32 H 0.97007 * 119.99664 * 22.56304 * 7 5 3 33 33 H 1.09004 * 109.47082 * 60.00313 * 10 8 7 34 34 H 1.09004 * 109.47205 * 300.00351 * 10 8 7 35 35 H 1.07996 * 126.57876 * 0.26203 * 12 11 10 36 36 H 1.07998 * 125.78499 * 180.02562 * 13 12 11 37 37 H 1.08006 * 125.79181 * 180.02562 * 15 14 13 38 38 H 1.08994 * 111.00478 * 153.48593 * 16 5 3 39 39 H 1.09003 * 111.00332 * 277.30042 * 16 5 3 40 40 H 1.09006 * 110.36338 * 81.82980 * 17 16 5 41 41 H 1.09002 * 110.36629 * 204.04371 * 17 16 5 42 42 H 0.96996 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6264 1.9841 0.8507 5 6 1.6354 2.1422 -1.3147 6 1 1.4541 1.4098 -2.1014 7 7 0.4543 2.9847 -1.1113 8 6 -0.3270 3.3140 -2.1589 9 8 -0.0526 2.9125 -3.2699 10 6 -1.5417 4.1811 -1.9497 11 6 -2.2362 4.3996 -3.2692 12 6 -1.9975 5.4517 -4.1829 13 6 -2.8360 5.2663 -5.2184 14 8 -3.5653 4.1637 -4.9817 15 6 -3.2059 3.6340 -3.8010 16 6 2.8778 3.0098 -1.6481 17 6 4.0323 2.1022 -1.1551 18 7 3.5117 1.4583 0.0646 19 6 4.2705 0.9540 1.0868 20 1 3.8030 0.6752 2.0197 21 6 5.6406 0.8012 0.9242 22 7 6.2103 1.1406 -0.2127 23 14 6.6756 0.1126 2.3185 24 1 6.2005 -1.2521 2.6606 25 1 8.0975 0.0497 1.8951 26 1 6.5515 0.9926 3.5083 27 1 -0.3634 0.5968 0.8366 28 1 -0.3632 0.4262 -0.9352 29 1 -0.3633 -1.0229 0.0985 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.2346 3.3055 -0.2226 33 1 -1.2352 5.1425 -1.5374 34 1 -2.2242 3.6894 -1.2565 35 1 -1.2798 6.2509 -4.0711 36 1 -2.9096 5.8968 -6.0921 37 1 -3.6242 2.7439 -3.3546 38 1 2.9525 3.1892 -2.7206 39 1 2.8568 3.9502 -1.0973 40 1 4.2723 1.3511 -1.9078 41 1 4.9132 2.7010 -0.9235 42 1 7.1676 1.0335 -0.3264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087550767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:26 Heat of formation + Delta-G solvation = -2.280497 kcal Electronic energy + Delta-G solvation = -23591.240752 eV Core-core repulsion = 20152.559991 eV Total energy + Delta-G solvation = -3438.680761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.61103 -39.64579 -37.68479 -34.08581 -33.90726 -32.75874 -31.72453 -30.48226 -29.07289 -27.90529 -26.29744 -24.34334 -22.35446 -21.68204 -21.07192 -20.27496 -20.08750 -19.37794 -17.53417 -16.92654 -16.76346 -15.89607 -15.72381 -15.06581 -14.83742 -14.69226 -14.00409 -13.86420 -13.73793 -13.16443 -13.07643 -12.86162 -12.74342 -12.45912 -12.02069 -11.93162 -11.68656 -11.54937 -11.15250 -10.88832 -10.82962 -10.60893 -10.43911 -10.26755 -10.10765 -9.93081 -9.73288 -9.63867 -9.44061 -8.63433 -8.59765 -8.53809 -6.83133 -5.73910 -3.10595 1.70623 2.47459 2.86093 3.06803 3.38662 3.43103 3.44666 3.55434 4.47870 4.64530 4.68842 4.89341 5.05434 5.28205 5.32610 5.35567 5.37862 5.53589 5.55270 5.61011 5.74518 5.81053 5.86596 5.91730 6.05143 6.07019 6.23672 6.32543 6.39593 6.41187 6.46623 6.58777 6.69788 6.75132 6.94364 7.02916 7.16087 7.53147 7.59425 7.78357 7.80495 8.26550 8.49243 9.18187 9.79094 10.46381 11.36858 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.003293 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.557250 B = 8499.659678 C = 8962.956904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.716 5.716 8 C 0.510 3.490 9 O -0.535 6.535 10 C -0.072 4.072 11 C -0.159 4.159 12 C -0.198 4.198 13 C -0.047 4.047 14 O -0.178 6.178 15 C -0.029 4.029 16 C -0.156 4.156 17 C 0.173 3.827 18 N -0.595 5.595 19 C -0.228 4.228 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.199 0.801 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.079 0.921 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.119 7.441 -3.826 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.367 5.367 8 C 0.296 3.704 9 O -0.411 6.411 10 C -0.113 4.113 11 C -0.161 4.161 12 C -0.217 4.217 13 C -0.114 4.114 14 O -0.074 6.074 15 C -0.097 4.097 16 C -0.196 4.196 17 C 0.047 3.953 18 N -0.319 5.319 19 C -0.356 4.356 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.741 3.259 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.231 0.769 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.216 0.784 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.098 0.902 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.869 6.986 -4.787 19.774 hybrid contribution 0.769 -0.200 1.254 1.485 sum -17.099 6.787 -3.533 18.733 Atomic orbital electron populations 1.21763 0.97250 1.00465 1.00894 1.22006 0.93614 0.99201 1.02350 1.21128 0.86971 0.93299 0.93349 0.94697 1.22075 0.83592 0.92397 0.98525 0.89090 1.46091 1.27652 1.52591 1.10395 1.20476 0.84062 0.81005 0.84861 1.90713 1.72517 1.53972 1.23902 1.20022 0.95236 1.01116 0.94883 1.19804 0.99988 0.97921 0.98378 1.21682 1.02924 1.01703 0.95411 1.23926 0.95932 0.90095 1.01471 1.84045 1.53306 1.35236 1.34820 1.23765 1.00272 1.00188 0.85501 1.23412 0.96855 0.99046 1.00240 1.21482 0.93389 0.93016 0.87381 1.44530 0.98344 1.68533 1.20542 1.18914 0.89108 1.35738 0.91842 0.90701 1.24871 0.97005 1.01150 0.97122 1.69914 1.10189 1.52642 1.23705 0.86221 0.79465 0.79008 0.81173 1.21132 1.21606 1.21154 0.93440 0.93312 0.93721 0.92399 0.91786 0.76922 0.88083 0.88239 0.83659 0.78313 0.78412 0.92032 0.92117 0.95773 0.90248 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.57 37.16 0.36 -1.74 16 2 C -0.13 -2.42 5.42 -26.73 -0.14 -2.57 16 3 C 0.16 3.14 2.95 -66.79 -0.20 2.94 16 4 H 0.04 0.66 7.70 -51.93 -0.40 0.26 16 5 C 0.14 2.48 1.96 -66.10 -0.13 2.35 16 6 H 0.09 1.80 7.25 -51.93 -0.38 1.42 16 7 N -0.72 -9.94 4.92 -52.03 -0.26 -10.20 16 8 C 0.51 7.24 7.82 -10.99 -0.09 7.15 16 9 O -0.53 -9.99 15.72 5.56 0.09 -9.90 16 10 C -0.07 -0.73 6.22 -29.03 -0.18 -0.91 16 11 C -0.16 -1.84 4.66 -104.74 -0.49 -2.33 16 12 C -0.20 -2.21 10.87 -39.70 -0.43 -2.64 16 13 C -0.05 -0.47 12.09 29.42 0.36 -0.12 16 14 O -0.18 -2.05 10.65 5.73 0.06 -1.99 16 15 C -0.03 -0.32 12.01 29.42 0.35 0.03 16 16 C -0.16 -3.07 6.77 -24.58 -0.17 -3.24 16 17 C 0.17 4.18 5.46 -2.53 -0.01 4.17 16 18 N -0.59 -14.63 3.14 -162.34 -0.51 -15.14 16 19 C -0.23 -6.13 9.79 -15.06 -0.15 -6.28 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 21 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 22 N -0.92 -26.60 10.47 55.49 0.58 -26.02 16 23 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.70 7.38 -51.93 -0.38 0.32 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 32 H 0.40 4.45 8.34 -40.82 -0.34 4.11 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.20 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 41 H 0.08 2.14 6.73 -51.93 -0.35 1.79 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -33.01 347.51 -7.29 -40.30 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.45 Total: 4.38 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.02 Total: -3.40 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.18 Total: -51.35 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.15 Total: -11.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.01 -7.29 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087550767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.018 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds