Wall clock time and date at job start Tue Mar 31 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47087 * 2 1 4 4 H 1.08999 * 110.00122 * 56.15517 * 3 2 1 5 5 C 1.54327 * 109.88353 * 295.05713 * 3 2 1 6 6 H 1.09006 * 110.71476 * 336.93379 * 5 3 2 7 7 N 1.46501 * 110.72046 * 100.02476 * 5 3 2 8 8 C 1.34773 * 119.99884 * 202.56054 * 7 5 3 9 9 O 1.21280 * 120.00048 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99814 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47158 * 179.97438 * 10 8 7 12 12 C 1.41380 * 126.58021 * 269.71357 * 11 10 8 13 13 C 1.34521 * 106.83961 * 180.26332 * 12 11 10 14 14 O 1.34297 * 108.41830 * 359.97438 * 13 12 11 15 15 C 1.34302 * 109.48019 * 0.02562 * 14 13 12 16 16 C 1.55150 * 103.10417 * 218.48090 * 5 3 2 17 17 C 1.54916 * 101.58295 * 35.41003 * 16 5 3 18 18 N 1.47323 * 110.06523 * 177.32501 * 3 2 1 19 19 C 1.36932 * 125.61447 * 298.32358 * 18 3 2 20 20 H 1.08000 * 120.00598 * 347.94261 * 19 18 3 21 21 C 1.38815 * 119.99884 * 167.94678 * 19 18 3 22 22 N 1.31618 * 120.00144 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99937 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47742 * 59.99255 * 23 21 19 25 25 H 1.48502 * 109.47136 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46933 * 299.99389 * 23 21 19 27 27 H 1.09004 * 109.47513 * 305.50236 * 1 2 3 28 28 H 1.09005 * 109.46501 * 65.49870 * 1 2 3 29 29 H 1.08996 * 109.46951 * 185.49968 * 1 2 3 30 30 H 1.08992 * 109.47472 * 239.99719 * 2 1 3 31 31 H 1.09004 * 109.46857 * 119.99398 * 2 1 3 32 32 H 0.97007 * 119.99664 * 22.56304 * 7 5 3 33 33 H 1.09004 * 109.47082 * 60.00313 * 10 8 7 34 34 H 1.09004 * 109.47205 * 300.00351 * 10 8 7 35 35 H 1.07996 * 126.57876 * 0.26203 * 12 11 10 36 36 H 1.07998 * 125.78499 * 180.02562 * 13 12 11 37 37 H 1.08006 * 125.79181 * 180.02562 * 15 14 13 38 38 H 1.08994 * 111.00478 * 153.48593 * 16 5 3 39 39 H 1.09003 * 111.00332 * 277.30042 * 16 5 3 40 40 H 1.09006 * 110.36338 * 81.82980 * 17 16 5 41 41 H 1.09002 * 110.36629 * 204.04371 * 17 16 5 42 42 H 0.96996 * 119.99929 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6264 1.9841 0.8507 5 6 1.6354 2.1422 -1.3147 6 1 1.4541 1.4098 -2.1014 7 7 0.4543 2.9847 -1.1113 8 6 -0.3270 3.3140 -2.1589 9 8 -0.0526 2.9125 -3.2699 10 6 -1.5417 4.1811 -1.9497 11 6 -2.2362 4.3996 -3.2692 12 6 -1.9975 5.4517 -4.1829 13 6 -2.8360 5.2663 -5.2184 14 8 -3.5653 4.1637 -4.9817 15 6 -3.2059 3.6340 -3.8010 16 6 2.8778 3.0098 -1.6481 17 6 4.0323 2.1022 -1.1551 18 7 3.5117 1.4583 0.0646 19 6 4.2705 0.9540 1.0868 20 1 3.8030 0.6752 2.0197 21 6 5.6406 0.8012 0.9242 22 7 6.2103 1.1406 -0.2127 23 14 6.6756 0.1126 2.3185 24 1 6.2005 -1.2521 2.6606 25 1 8.0975 0.0497 1.8951 26 1 6.5515 0.9926 3.5083 27 1 -0.3634 0.5968 0.8366 28 1 -0.3632 0.4262 -0.9352 29 1 -0.3633 -1.0229 0.0985 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.2346 3.3055 -0.2226 33 1 -1.2352 5.1425 -1.5374 34 1 -2.2242 3.6894 -1.2565 35 1 -1.2798 6.2509 -4.0711 36 1 -2.9096 5.8968 -6.0921 37 1 -3.6242 2.7439 -3.3546 38 1 2.9525 3.1892 -2.7206 39 1 2.8568 3.9502 -1.0973 40 1 4.2723 1.3511 -1.9078 41 1 4.9132 2.7010 -0.9235 42 1 7.1676 1.0335 -0.3264 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087550767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:21 Heat of formation + Delta-G solvation = -23.869827 kcal Electronic energy + Delta-G solvation = -23592.176936 eV Core-core repulsion = 20152.559991 eV Total energy + Delta-G solvation = -3439.616945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -43.38577 -40.95306 -39.22886 -35.58974 -34.85987 -34.25129 -33.46578 -31.43503 -30.70641 -28.96223 -27.73411 -26.22605 -23.77146 -22.48174 -22.37454 -21.75362 -21.42882 -20.64825 -18.75627 -18.37643 -17.95796 -17.22976 -16.68499 -16.64243 -16.14561 -15.77071 -15.56294 -15.40344 -15.09298 -14.53130 -14.28421 -14.05941 -13.68577 -13.60871 -13.53641 -13.29653 -13.22071 -12.86956 -12.68214 -12.57408 -12.36363 -12.20576 -12.06063 -11.98207 -11.88050 -11.54714 -11.34328 -10.99259 -10.67568 -10.45509 -9.91932 -9.37049 -8.84695 -7.83193 -5.21578 0.93456 1.47427 1.50358 1.56433 1.64030 1.76322 2.32898 2.41195 2.55430 3.35465 3.58438 3.84683 3.87190 3.92994 4.02191 4.12532 4.21131 4.25270 4.38643 4.42453 4.62022 4.62966 4.67047 4.70034 4.76905 4.84334 4.91650 5.02619 5.16565 5.18621 5.21268 5.33811 5.36007 5.47564 5.51740 5.57586 5.64581 5.71017 5.72910 6.23870 6.25589 6.69867 7.09571 7.39895 7.77680 8.44275 9.26777 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.034707 B = 0.003293 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.557250 B = 8499.659678 C = 8962.956904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.158 3.842 4 H 0.056 0.944 5 C 0.158 3.842 6 H 0.071 0.929 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.583 6.583 10 C -0.061 4.061 11 C -0.181 4.181 12 C -0.224 4.224 13 C -0.049 4.049 14 O -0.192 6.192 15 C -0.040 4.040 16 C -0.141 4.141 17 C 0.180 3.820 18 N -0.614 5.614 19 C -0.232 4.232 20 H 0.084 0.916 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.976 3.024 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.274 1.274 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.415 0.585 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.153 0.847 36 H 0.231 0.769 37 H 0.222 0.778 38 H 0.060 0.940 39 H 0.074 0.926 40 H -0.012 1.012 41 H 0.046 0.954 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.746 8.154 -2.344 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.167 4.167 3 C 0.052 3.948 4 H 0.074 0.926 5 C 0.052 3.948 6 H 0.089 0.911 7 N -0.355 5.355 8 C 0.300 3.700 9 O -0.462 6.462 10 C -0.100 4.100 11 C -0.183 4.183 12 C -0.243 4.243 13 C -0.115 4.115 14 O -0.088 6.088 15 C -0.107 4.107 16 C -0.181 4.181 17 C 0.054 3.946 18 N -0.339 5.339 19 C -0.361 4.361 20 H 0.102 0.898 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.200 1.200 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.252 0.748 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.171 0.829 36 H 0.247 0.753 37 H 0.239 0.761 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.006 0.994 41 H 0.064 0.936 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.560 7.717 -3.260 22.201 hybrid contribution 1.543 -0.406 0.745 1.761 sum -19.016 7.311 -2.515 20.528 Atomic orbital electron populations 1.21643 0.93531 1.01960 1.01906 1.21903 0.96784 0.97629 1.00367 1.21330 0.84177 0.94534 0.94782 0.92600 1.21561 0.84404 0.91915 0.96917 0.91073 1.45859 1.26172 1.51867 1.11632 1.21246 0.84603 0.80354 0.83766 1.90706 1.73799 1.55829 1.25871 1.20059 0.93450 1.01479 0.95062 1.20128 1.00538 0.98316 0.99299 1.21996 1.03762 1.02393 0.96123 1.24590 0.95080 0.89709 1.02165 1.84047 1.53775 1.35770 1.35235 1.24319 1.00337 1.00763 0.85297 1.23214 0.95935 0.98804 1.00133 1.21170 0.94159 0.92385 0.86857 1.44778 1.00671 1.68550 1.19903 1.19311 0.89582 1.34488 0.92721 0.89781 1.25694 0.98403 1.02273 0.99469 1.70142 1.09769 1.54364 1.25741 0.85188 0.77181 0.78561 0.78618 1.20439 1.22491 1.19984 0.91102 0.93199 0.92369 0.94966 0.93255 0.74767 0.85766 0.84741 0.82937 0.75271 0.76129 0.92109 0.90764 0.99433 0.93563 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.57 71.98 0.69 -2.73 16 2 C -0.13 -4.56 5.42 30.59 0.17 -4.39 16 3 C 0.16 6.02 2.95 45.28 0.13 6.15 16 4 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 5 C 0.16 5.50 1.96 46.18 0.09 5.60 16 6 H 0.07 2.82 7.25 -2.38 -0.02 2.80 16 7 N -0.70 -17.52 4.92 -436.92 -2.15 -19.67 16 8 C 0.51 13.23 7.82 87.66 0.69 13.91 16 9 O -0.58 -21.16 15.72 -3.03 -0.05 -21.20 16 10 C -0.06 -1.00 6.22 29.10 0.18 -0.82 16 11 C -0.18 -3.76 4.66 -19.94 -0.09 -3.86 16 12 C -0.22 -4.63 10.87 22.19 0.24 -4.39 16 13 C -0.05 -0.90 12.09 66.97 0.81 -0.09 16 14 O -0.19 -4.12 10.65 -2.42 -0.03 -4.15 16 15 C -0.04 -0.79 12.01 66.97 0.80 0.02 16 16 C -0.14 -5.58 6.77 31.99 0.22 -5.36 16 17 C 0.18 9.10 5.46 86.86 0.47 9.58 16 18 N -0.61 -30.61 3.14 -667.53 -2.10 -32.70 16 19 C -0.23 -12.59 9.79 84.04 0.82 -11.77 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 21 C -0.07 -3.68 5.47 84.86 0.46 -3.21 16 22 N -0.95 -57.39 10.47 21.65 0.23 -57.16 16 23 Si 0.98 45.27 29.55 68.60 2.03 47.29 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.29 7.38 -2.38 -0.02 1.27 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.05 1.89 7.93 -2.38 -0.02 1.88 16 32 H 0.41 7.56 8.34 -92.70 -0.77 6.79 16 33 H 0.12 1.50 8.14 -2.38 -0.02 1.49 16 34 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 36 H 0.23 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.22 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H -0.01 -0.70 8.11 -2.38 -0.02 -0.72 16 41 H 0.05 2.62 6.73 -2.39 -0.02 2.60 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -74.87 347.51 3.86 -71.01 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.24 Total: 17.95 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 5.69 Total: -1.36 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.02 Total: -109.54 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.07 Total: -25.35 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.87 3.86 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087550767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.136 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds