Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.08998 * 109.99945 * 304.65020 * 3 2 1 5 5 C 1.54335 * 109.99171 * 183.61638 * 3 2 1 6 6 H 1.09001 * 110.51047 * 336.97613 * 5 3 2 7 7 N 1.46503 * 110.84955 * 100.19630 * 5 3 2 8 8 C 1.34779 * 119.99634 * 200.14722 * 7 5 3 9 9 O 1.21614 * 120.00358 * 0.02562 * 8 7 5 10 10 C 1.47382 * 119.99485 * 179.97438 * 8 7 5 11 11 C 1.36409 * 127.19461 * 0.02981 * 10 8 7 12 12 O 1.33656 * 108.40011 * 179.97438 * 11 10 8 13 13 C 1.34213 * 110.90599 * 359.97438 * 12 11 10 14 14 C 1.34188 * 109.12550 * 359.70772 * 13 12 11 15 15 C 1.50692 * 127.02416 * 180.26940 * 14 13 12 16 16 C 1.55156 * 103.02205 * 218.66736 * 5 3 2 17 17 C 1.54909 * 101.58184 * 35.30482 * 16 5 3 18 18 N 1.47021 * 109.88367 * 65.74751 * 3 2 1 19 19 C 1.36936 * 125.64939 * 298.39682 * 18 3 2 20 20 H 1.07994 * 119.99899 * 333.64512 * 19 18 3 21 21 C 1.38814 * 119.99868 * 153.64803 * 19 18 3 22 22 N 1.31618 * 119.99914 * 334.80655 * 21 19 18 23 23 Si 1.86805 * 119.99887 * 154.81215 * 21 19 18 24 24 H 1.48500 * 109.47128 * 59.99576 * 23 21 19 25 25 H 1.48507 * 109.46958 * 299.99427 * 23 21 19 26 26 H 1.48500 * 109.46975 * 179.97438 * 23 21 19 27 27 H 1.09007 * 109.46718 * 171.76237 * 1 2 3 28 28 H 1.08999 * 109.47151 * 291.76096 * 1 2 3 29 29 H 1.08994 * 109.47051 * 51.76281 * 1 2 3 30 30 H 1.08996 * 109.46940 * 239.99908 * 2 1 3 31 31 H 1.09003 * 109.47052 * 119.99512 * 2 1 3 32 32 H 0.96995 * 119.99646 * 20.14420 * 7 5 3 33 33 H 1.08003 * 125.80134 * 359.97438 * 11 10 8 34 34 H 1.08003 * 125.43990 * 180.02562 * 13 12 11 35 35 H 1.08998 * 109.47581 * 270.19666 * 15 14 13 36 36 H 1.08997 * 109.47263 * 30.20204 * 15 14 13 37 37 H 1.09009 * 109.47003 * 150.19780 * 15 14 13 38 38 H 1.09000 * 110.99920 * 277.23246 * 16 5 3 39 39 H 1.09000 * 111.00576 * 153.38445 * 16 5 3 40 40 H 1.09003 * 110.36185 * 204.15983 * 17 16 5 41 41 H 1.08998 * 110.45892 * 81.88084 * 17 16 5 42 42 H 0.96999 * 120.00363 * 353.73557 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6152 1.9881 -0.8426 5 6 3.5805 1.4575 -0.0915 6 1 3.9935 0.5135 0.2641 7 7 4.0188 1.7332 -1.4620 8 6 5.2652 1.3988 -1.8509 9 8 6.0258 0.8678 -1.0645 10 6 5.7059 1.6757 -3.2298 11 6 4.9800 2.2602 -4.2259 12 8 5.7439 2.3282 -5.3205 13 6 6.9593 1.8080 -5.0893 14 6 7.0225 1.3868 -3.8168 15 6 8.2006 0.7445 -3.1311 16 6 3.9757 2.6210 0.8558 17 6 2.9043 2.4945 1.9676 18 7 1.6712 2.1032 1.2605 19 6 0.3940 2.3148 1.7069 20 1 -0.4187 2.3944 1.0001 21 6 0.1440 2.4270 3.0677 22 7 0.9589 1.8649 3.9350 23 14 -1.3491 3.3756 3.6679 24 1 -2.5829 2.7509 3.1267 25 1 -1.2615 4.7830 3.2021 26 1 -1.3902 3.3466 5.1520 27 1 -0.3633 -1.0171 -0.1473 28 1 -0.3633 0.3810 0.9544 29 1 -0.3633 0.6360 -0.8071 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.4120 2.1564 -2.0893 33 1 3.9611 2.6089 -4.1439 34 1 7.7606 1.7438 -5.8106 35 1 8.1503 -0.3369 -3.2587 36 1 9.1253 1.1195 -3.5698 37 1 8.1786 0.9862 -2.0684 38 1 3.8992 3.5820 0.3472 39 1 4.9772 2.4731 1.2597 40 1 2.7655 3.4511 2.4712 41 1 3.1898 1.7261 2.6860 42 1 1.6814 1.2971 3.6243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087687460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -9.131272 kcal Electronic energy + Delta-G solvation = -23802.111495 eV Core-core repulsion = 20363.133662 eV Total energy + Delta-G solvation = -3438.977833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.88 seconds Orbital eigenvalues (eV) -42.73247 -39.59864 -37.80811 -34.30199 -33.93903 -32.60847 -32.11320 -30.61935 -28.54092 -27.38247 -26.89407 -24.64030 -23.41759 -21.80202 -20.88096 -20.37868 -20.15247 -19.42852 -18.02105 -17.35736 -16.38365 -16.17547 -15.85306 -14.96359 -14.60218 -14.50387 -14.09097 -13.67620 -13.50025 -13.39538 -13.19270 -13.07249 -12.90232 -12.65323 -12.41988 -12.11184 -11.68414 -11.62251 -11.09765 -10.92140 -10.76342 -10.49708 -10.25966 -10.13649 -10.05171 -9.86483 -9.78978 -9.68369 -9.43205 -8.90058 -8.73300 -8.40640 -6.91800 -6.06210 -3.23373 1.21212 1.86998 2.73031 3.24576 3.39857 3.47767 3.51804 3.69359 4.33458 4.48081 4.56645 4.85809 5.05092 5.19311 5.25593 5.32865 5.34581 5.41979 5.58487 5.66984 5.72529 5.74717 5.87270 5.92212 5.96161 6.06119 6.14928 6.27524 6.32476 6.39625 6.50023 6.56522 6.65881 6.75714 6.78291 6.94112 7.04904 7.09874 7.32437 7.64265 7.85989 8.34078 8.48451 9.00721 9.78226 10.36930 11.21459 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.003594 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.690629 B = 7789.874838 C = 8017.049830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.036 0.964 5 C 0.137 3.863 6 H 0.093 0.907 7 N -0.712 5.712 8 C 0.584 3.416 9 O -0.535 6.535 10 C -0.229 4.229 11 C 0.019 3.981 12 O -0.173 6.173 13 C -0.051 4.051 14 C -0.132 4.132 15 C -0.087 4.087 16 C -0.144 4.144 17 C 0.143 3.857 18 N -0.589 5.589 19 C -0.327 4.327 20 H 0.063 0.937 21 C -0.023 4.023 22 N -0.912 5.912 23 Si 1.064 2.936 24 H -0.293 1.293 25 H -0.294 1.294 26 H -0.286 1.286 27 H 0.029 0.971 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.211 0.789 34 H 0.206 0.794 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 0.130 -17.192 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.050 3.950 4 H 0.053 0.947 5 C 0.033 3.967 6 H 0.111 0.889 7 N -0.362 5.362 8 C 0.371 3.629 9 O -0.413 6.413 10 C -0.233 4.233 11 C -0.051 4.051 12 O -0.068 6.068 13 C -0.117 4.117 14 C -0.134 4.134 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.017 3.983 18 N -0.315 5.315 19 C -0.455 4.455 20 H 0.081 0.919 21 C -0.226 4.226 22 N -0.552 5.552 23 Si 0.894 3.106 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.211 1.211 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.229 0.771 33 H 0.228 0.772 34 H 0.223 0.777 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.959 0.432 -15.475 17.887 hybrid contribution 0.446 -0.486 -1.629 1.757 sum 9.405 -0.054 -17.104 19.519 Atomic orbital electron populations 1.21887 0.95614 0.98850 1.04205 1.21886 0.97088 0.97581 0.99699 1.21188 0.89597 0.92331 0.91928 0.94661 1.22099 0.95563 0.99153 0.79935 0.88875 1.45906 1.13763 1.62382 1.14188 1.17238 0.81791 0.78283 0.85548 1.90759 1.53365 1.43057 1.54094 1.21528 0.96075 1.10053 0.95677 1.24448 0.96897 0.99996 0.83801 1.83773 1.22687 1.63769 1.36619 1.23696 0.86808 1.03468 0.97704 1.21447 0.95378 1.02994 0.93559 1.20237 0.92707 0.99753 1.01669 1.23187 0.99420 0.97723 0.97987 1.21552 0.85288 0.98635 0.92779 1.44508 1.01914 1.65353 1.19771 1.19595 0.83778 1.49462 0.92677 0.91928 1.25834 1.03968 1.00463 0.92335 1.70759 1.19025 1.28968 1.36416 0.83538 0.74818 0.76116 0.76155 1.21961 1.22092 1.21127 0.95219 0.88946 0.94328 0.94305 0.92532 0.77103 0.77246 0.77709 0.91218 0.91829 0.89808 0.91653 0.91519 0.93141 0.95204 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.98 37.16 0.33 -2.55 16 2 C -0.12 -2.36 5.47 -26.73 -0.15 -2.51 16 3 C 0.16 3.08 3.00 -66.95 -0.20 2.88 16 4 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 5 C 0.14 2.44 2.76 -66.09 -0.18 2.26 16 6 H 0.09 1.82 7.40 -51.93 -0.38 1.43 16 7 N -0.71 -10.34 5.20 -53.11 -0.28 -10.62 16 8 C 0.58 9.05 7.81 -12.54 -0.10 8.95 16 9 O -0.53 -10.09 15.14 5.27 0.08 -10.02 16 10 C -0.23 -2.90 6.31 -103.28 -0.65 -3.55 16 11 C 0.02 0.18 11.61 30.07 0.35 0.53 16 12 O -0.17 -1.69 10.52 7.65 0.08 -1.61 16 13 C -0.05 -0.46 11.96 29.31 0.35 -0.11 16 14 C -0.13 -1.52 6.37 -102.49 -0.65 -2.17 16 15 C -0.09 -0.92 10.00 36.00 0.36 -0.56 16 16 C -0.14 -2.70 6.77 -24.58 -0.17 -2.87 16 17 C 0.14 3.27 5.57 -2.53 -0.01 3.26 16 18 N -0.59 -14.01 2.92 -162.57 -0.47 -14.48 16 19 C -0.33 -8.58 7.22 -15.06 -0.11 -8.69 16 20 H 0.06 1.64 7.25 -52.49 -0.38 1.26 16 21 C -0.02 -0.63 5.17 -17.43 -0.09 -0.72 16 22 N -0.91 -26.77 13.05 55.49 0.72 -26.04 16 23 Si 1.06 24.64 29.99 -169.99 -5.10 19.54 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 2.12 5.53 -51.93 -0.29 1.83 16 29 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.39 4.60 7.29 -40.82 -0.30 4.31 16 33 H 0.21 1.27 7.47 -52.48 -0.39 0.88 16 34 H 0.21 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.09 6.92 -51.92 -0.36 0.73 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.74 6.72 -51.93 -0.35 0.39 16 42 H 0.27 8.00 6.20 -40.82 -0.25 7.75 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.14 340.94 -6.87 -39.01 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.12 Total: 4.93 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -0.92 Total: -5.85 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.03 Total: -51.15 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.16 Total: -11.63 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.10 Total: 19.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.14 -6.87 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087687460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.881 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds