Wall clock time and date at job start Tue Mar 31 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46921 * 2 1 4 4 H 1.08998 * 109.99945 * 304.65020 * 3 2 1 5 5 C 1.54335 * 109.99171 * 183.61638 * 3 2 1 6 6 H 1.09001 * 110.51047 * 336.97613 * 5 3 2 7 7 N 1.46503 * 110.84955 * 100.19630 * 5 3 2 8 8 C 1.34779 * 119.99634 * 200.14722 * 7 5 3 9 9 O 1.21614 * 120.00358 * 0.02562 * 8 7 5 10 10 C 1.47382 * 119.99485 * 179.97438 * 8 7 5 11 11 C 1.36409 * 127.19461 * 0.02981 * 10 8 7 12 12 O 1.33656 * 108.40011 * 179.97438 * 11 10 8 13 13 C 1.34213 * 110.90599 * 359.97438 * 12 11 10 14 14 C 1.34188 * 109.12550 * 359.70772 * 13 12 11 15 15 C 1.50692 * 127.02416 * 180.26940 * 14 13 12 16 16 C 1.55156 * 103.02205 * 218.66736 * 5 3 2 17 17 C 1.54909 * 101.58184 * 35.30482 * 16 5 3 18 18 N 1.47021 * 109.88367 * 65.74751 * 3 2 1 19 19 C 1.36936 * 125.64939 * 298.39682 * 18 3 2 20 20 H 1.07994 * 119.99899 * 333.64512 * 19 18 3 21 21 C 1.38814 * 119.99868 * 153.64803 * 19 18 3 22 22 N 1.31618 * 119.99914 * 334.80655 * 21 19 18 23 23 Si 1.86805 * 119.99887 * 154.81215 * 21 19 18 24 24 H 1.48500 * 109.47128 * 59.99576 * 23 21 19 25 25 H 1.48507 * 109.46958 * 299.99427 * 23 21 19 26 26 H 1.48500 * 109.46975 * 179.97438 * 23 21 19 27 27 H 1.09007 * 109.46718 * 171.76237 * 1 2 3 28 28 H 1.08999 * 109.47151 * 291.76096 * 1 2 3 29 29 H 1.08994 * 109.47051 * 51.76281 * 1 2 3 30 30 H 1.08996 * 109.46940 * 239.99908 * 2 1 3 31 31 H 1.09003 * 109.47052 * 119.99512 * 2 1 3 32 32 H 0.96995 * 119.99646 * 20.14420 * 7 5 3 33 33 H 1.08003 * 125.80134 * 359.97438 * 11 10 8 34 34 H 1.08003 * 125.43990 * 180.02562 * 13 12 11 35 35 H 1.08998 * 109.47581 * 270.19666 * 15 14 13 36 36 H 1.08997 * 109.47263 * 30.20204 * 15 14 13 37 37 H 1.09009 * 109.47003 * 150.19780 * 15 14 13 38 38 H 1.09000 * 110.99920 * 277.23246 * 16 5 3 39 39 H 1.09000 * 111.00576 * 153.38445 * 16 5 3 40 40 H 1.09003 * 110.36185 * 204.15983 * 17 16 5 41 41 H 1.08998 * 110.45892 * 81.88084 * 17 16 5 42 42 H 0.96999 * 120.00363 * 353.73557 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6152 1.9881 -0.8426 5 6 3.5805 1.4575 -0.0915 6 1 3.9935 0.5135 0.2641 7 7 4.0188 1.7332 -1.4620 8 6 5.2652 1.3988 -1.8509 9 8 6.0258 0.8678 -1.0645 10 6 5.7059 1.6757 -3.2298 11 6 4.9800 2.2602 -4.2259 12 8 5.7439 2.3282 -5.3205 13 6 6.9593 1.8080 -5.0893 14 6 7.0225 1.3868 -3.8168 15 6 8.2006 0.7445 -3.1311 16 6 3.9757 2.6210 0.8558 17 6 2.9043 2.4945 1.9676 18 7 1.6712 2.1032 1.2605 19 6 0.3940 2.3148 1.7069 20 1 -0.4187 2.3944 1.0001 21 6 0.1440 2.4270 3.0677 22 7 0.9589 1.8649 3.9350 23 14 -1.3491 3.3756 3.6679 24 1 -2.5829 2.7509 3.1267 25 1 -1.2615 4.7830 3.2021 26 1 -1.3902 3.3466 5.1520 27 1 -0.3633 -1.0171 -0.1473 28 1 -0.3633 0.3810 0.9544 29 1 -0.3633 0.6360 -0.8071 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.4120 2.1564 -2.0893 33 1 3.9611 2.6089 -4.1439 34 1 7.7606 1.7438 -5.8106 35 1 8.1503 -0.3369 -3.2587 36 1 9.1253 1.1195 -3.5698 37 1 8.1786 0.9862 -2.0684 38 1 3.8992 3.5820 0.3472 39 1 4.9772 2.4731 1.2597 40 1 2.7655 3.4511 2.4712 41 1 3.1898 1.7261 2.6860 42 1 1.6814 1.2971 3.6243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087687460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:04 Heat of formation + Delta-G solvation = -30.073082 kcal Electronic energy + Delta-G solvation = -23803.019600 eV Core-core repulsion = 20363.133662 eV Total energy + Delta-G solvation = -3439.885938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.92 seconds Orbital eigenvalues (eV) -43.50231 -40.97302 -39.36434 -35.82373 -34.78342 -34.32353 -33.74229 -31.68574 -30.26864 -28.48787 -28.13463 -26.41164 -24.64400 -23.47417 -22.10121 -21.72973 -21.27367 -20.85416 -19.32014 -18.95883 -17.61023 -17.15948 -16.91608 -16.16945 -16.11124 -15.75710 -15.61917 -15.39576 -15.04035 -14.66840 -14.40374 -14.31403 -14.03555 -13.99887 -13.70192 -13.42347 -13.36121 -12.84500 -12.66337 -12.51607 -12.44981 -12.19230 -11.91702 -11.85524 -11.74066 -11.57483 -11.38039 -11.09221 -10.60298 -10.43403 -10.09661 -9.60282 -8.92703 -8.17595 -5.32637 0.35835 1.08422 1.60626 1.67963 1.85643 1.95702 2.12753 2.29777 2.68865 3.26724 3.42925 3.62247 3.67175 3.72816 3.75435 4.05794 4.10009 4.25747 4.34610 4.37368 4.45309 4.51671 4.55346 4.66256 4.79382 4.85774 4.91296 4.95405 4.98196 5.04737 5.05564 5.06681 5.14263 5.21738 5.31866 5.50959 5.54539 5.64735 5.84549 6.00115 6.39147 6.51311 6.95668 7.18239 7.75006 8.36566 9.08498 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.003594 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.690629 B = 7789.874838 C = 8017.049830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.057 0.943 5 C 0.153 3.847 6 H 0.074 0.926 7 N -0.699 5.699 8 C 0.585 3.415 9 O -0.578 6.578 10 C -0.268 4.268 11 C 0.047 3.953 12 O -0.172 6.172 13 C -0.030 4.030 14 C -0.167 4.167 15 C -0.083 4.083 16 C -0.128 4.128 17 C 0.148 3.852 18 N -0.606 5.606 19 C -0.314 4.314 20 H 0.067 0.933 21 C -0.080 4.080 22 N -0.949 5.949 23 Si 1.111 2.889 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.299 1.299 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.027 0.973 32 H 0.413 0.587 33 H 0.247 0.753 34 H 0.246 0.754 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.002 0.998 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.994 1.029 -21.036 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.050 3.950 4 H 0.074 0.926 5 C 0.048 3.952 6 H 0.092 0.908 7 N -0.351 5.351 8 C 0.375 3.625 9 O -0.459 6.459 10 C -0.273 4.273 11 C -0.024 4.024 12 O -0.066 6.066 13 C -0.096 4.096 14 C -0.169 4.169 15 C -0.140 4.140 16 C -0.167 4.167 17 C 0.022 3.978 18 N -0.332 5.332 19 C -0.443 4.443 20 H 0.084 0.916 21 C -0.276 4.276 22 N -0.591 5.591 23 Si 0.936 3.064 24 H -0.199 1.199 25 H -0.207 1.207 26 H -0.226 1.226 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.250 0.750 33 H 0.263 0.737 34 H 0.262 0.738 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.019 0.981 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.554 1.342 -19.396 21.241 hybrid contribution 0.612 -0.798 -0.561 1.152 sum 9.166 0.544 -19.957 21.968 Atomic orbital electron populations 1.21762 0.95429 1.00251 1.02433 1.21832 0.97146 0.97178 0.99739 1.21316 0.90778 0.92468 0.90422 0.92556 1.21652 0.94200 0.97755 0.81638 0.90835 1.45634 1.14078 1.62450 1.12925 1.17665 0.81242 0.77155 0.86487 1.90744 1.54504 1.45038 1.55604 1.21409 0.97744 1.13299 0.94805 1.25031 0.97621 0.97192 0.82549 1.83831 1.23014 1.63372 1.36417 1.24342 0.86961 1.00966 0.97290 1.21687 0.95372 1.04876 0.94921 1.20172 0.94129 0.99815 0.99865 1.23028 0.97933 0.98961 0.96818 1.21375 0.86537 0.96332 0.93539 1.44725 1.01489 1.66181 1.20797 1.19814 0.84806 1.47102 0.92604 0.91570 1.27082 1.05951 1.01405 0.93192 1.70878 1.20187 1.31153 1.36918 0.82901 0.72850 0.75712 0.74906 1.19883 1.20670 1.22558 0.93208 0.92912 0.92743 0.91287 0.95382 0.75001 0.73726 0.73848 0.91435 0.89115 0.93040 0.90157 0.91367 0.95609 0.98067 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 8.98 71.98 0.65 -4.63 16 2 C -0.12 -4.47 5.47 30.59 0.17 -4.31 16 3 C 0.16 5.96 3.00 45.34 0.14 6.10 16 4 H 0.06 1.96 7.69 -2.39 -0.02 1.95 16 5 C 0.15 5.38 2.76 46.18 0.13 5.50 16 6 H 0.07 2.92 7.40 -2.39 -0.02 2.90 16 7 N -0.70 -18.93 5.20 -440.18 -2.29 -21.22 16 8 C 0.58 17.56 7.81 86.65 0.68 18.24 16 9 O -0.58 -22.23 15.14 -4.08 -0.06 -22.29 16 10 C -0.27 -6.23 6.31 -18.99 -0.12 -6.35 16 11 C 0.05 0.72 11.61 67.39 0.78 1.50 16 12 O -0.17 -2.62 10.52 4.45 0.05 -2.58 16 13 C -0.03 -0.43 11.96 66.90 0.80 0.37 16 14 C -0.17 -3.51 6.37 -18.49 -0.12 -3.62 16 15 C -0.08 -1.71 10.00 71.23 0.71 -0.99 16 16 C -0.13 -4.83 6.77 31.99 0.22 -4.61 16 17 C 0.15 7.04 5.57 86.85 0.48 7.52 16 18 N -0.61 -29.09 2.92 -668.24 -1.95 -31.05 16 19 C -0.31 -16.60 7.22 84.03 0.61 -15.99 16 20 H 0.07 3.42 7.25 -2.91 -0.02 3.39 16 21 C -0.08 -4.46 5.17 84.86 0.44 -4.03 16 22 N -0.95 -58.08 13.05 21.65 0.28 -57.80 16 23 Si 1.11 50.23 29.99 68.60 2.06 52.28 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.05 2.40 5.53 -2.39 -0.01 2.39 16 29 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.41 8.16 7.29 -92.71 -0.68 7.48 16 33 H 0.25 1.69 7.47 -2.91 -0.02 1.67 16 34 H 0.25 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.05 1.38 6.92 -2.38 -0.02 1.37 16 38 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.00 0.08 6.72 -2.39 -0.02 0.06 16 42 H 0.25 15.91 6.20 -92.71 -0.57 15.34 16 Total: -1.00 -73.67 340.94 4.19 -69.48 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.55 Total: 18.47 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: 5.56 Total: -5.31 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -3.96 Total: -110.06 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.01 Total: -24.86 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.06 Total: 52.28 kcal Total: -73.67 4.19 -69.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087687460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.405 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.92 seconds