Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21699 * 119.99290 * 359.97438 * 8 7 5 10 10 C 1.46650 * 120.00186 * 179.97438 * 8 7 5 11 11 C 1.36551 * 125.98917 * 180.02562 * 10 8 7 12 12 C 1.40363 * 106.70980 * 179.97438 * 11 10 8 13 13 C 1.50694 * 126.44253 * 179.97438 * 12 11 10 14 14 C 1.35134 * 107.11115 * 359.97438 * 12 11 10 15 15 O 1.33925 * 108.77264 * 359.77148 * 14 12 11 16 16 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 17 17 C 1.54910 * 101.57974 * 35.30613 * 16 5 3 18 18 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 19 19 C 1.36937 * 125.64711 * 298.39400 * 18 3 2 20 20 H 1.08001 * 119.99698 * 137.66376 * 19 18 3 21 21 C 1.38811 * 120.00174 * 317.66370 * 19 18 3 22 22 N 1.31612 * 120.00077 * 165.29696 * 21 19 18 23 23 Si 1.86795 * 119.99943 * 345.29056 * 21 19 18 24 24 H 1.48500 * 109.46981 * 90.64905 * 23 21 19 25 25 H 1.48504 * 109.47384 * 330.65296 * 23 21 19 26 26 H 1.48495 * 109.47247 * 210.65317 * 23 21 19 27 27 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 28 28 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 29 29 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 30 30 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 31 31 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 32 32 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 33 33 H 1.08000 * 126.64277 * 359.92780 * 11 10 8 34 34 H 1.09004 * 109.46684 * 89.99924 * 13 12 11 35 35 H 1.09002 * 109.47346 * 209.99830 * 13 12 11 36 36 H 1.09001 * 109.47296 * 330.00681 * 13 12 11 37 37 H 1.08003 * 125.60689 * 179.97438 * 14 12 11 38 38 H 1.09004 * 111.00712 * 277.23419 * 16 5 3 39 39 H 1.08998 * 111.00975 * 153.37963 * 16 5 3 40 40 H 1.09004 * 110.36479 * 204.15215 * 17 16 5 41 41 H 1.08999 * 110.36730 * 81.83661 * 17 16 5 42 42 H 0.97006 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0223 0.8696 -1.0802 10 6 5.6910 1.6788 -3.2371 11 6 6.9177 1.3934 -3.7647 12 6 6.8937 1.8268 -5.0995 13 6 8.0218 1.7269 -6.0936 14 6 5.6687 2.3507 -5.3255 15 8 4.9451 2.2548 -4.2026 16 6 3.9792 2.6198 0.8498 17 6 2.9122 2.4916 1.9656 18 7 1.6763 2.1015 1.2630 19 6 0.4009 2.3125 1.7146 20 1 0.1613 2.1437 2.7541 21 6 -0.5840 2.7434 0.8364 22 7 -1.8517 2.6712 1.1826 23 14 -0.1100 3.4258 -0.8366 24 1 -0.0756 2.3222 -1.8296 25 1 1.2314 4.0573 -0.7518 26 1 -1.1089 4.4403 -1.2584 27 1 -0.3634 -1.0197 -0.1278 28 1 -0.3633 0.3992 0.9469 29 1 -0.3633 0.6205 -0.8193 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.4039 2.1593 -2.0937 33 1 7.7462 0.9255 -3.2537 34 1 7.9529 0.7788 -6.6271 35 1 7.9534 2.5499 -6.8050 36 1 8.9752 1.7793 -5.5678 37 1 5.3281 2.7737 -6.2590 38 1 3.9008 3.5816 0.3429 39 1 4.9823 2.4713 1.2495 40 1 2.7755 3.4476 2.4712 41 1 3.2016 1.7214 2.6805 42 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087694247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = 1.698160 kcal Electronic energy + Delta-G solvation = -24044.217853 eV Core-core repulsion = 20605.709619 eV Total energy + Delta-G solvation = -3438.508234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.87714 -39.72306 -37.97049 -34.66452 -34.08832 -32.57534 -31.96315 -30.81088 -29.37501 -27.65599 -26.88082 -24.66334 -23.33042 -21.63163 -21.30430 -20.61618 -20.34501 -19.48944 -18.06134 -16.83546 -16.53640 -16.42036 -16.18751 -15.09591 -14.69786 -14.50224 -14.09681 -13.75974 -13.47058 -13.39090 -13.23191 -13.13519 -12.96308 -12.83951 -12.35657 -12.03185 -12.01790 -11.85364 -11.35382 -11.22096 -10.97243 -10.63053 -10.48069 -10.32820 -10.08411 -9.99238 -9.92308 -9.73259 -9.48704 -8.99350 -8.69172 -8.39379 -6.76591 -6.06350 -3.53162 0.93411 2.09694 2.55816 3.15293 3.20933 3.25330 3.39031 3.42502 4.45153 4.48599 4.52949 4.70485 4.96479 5.06433 5.13145 5.26538 5.30089 5.34157 5.40690 5.52718 5.58330 5.68481 5.74521 5.85299 5.93672 6.01870 6.16220 6.17758 6.22123 6.35469 6.43769 6.63245 6.64070 6.69268 6.77195 6.83139 6.87705 7.13704 7.51973 7.67067 7.96096 8.10839 8.30002 8.80793 9.59327 10.21382 11.08198 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.004438 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.071420 B = 6308.259459 C = 6808.795592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.144 3.856 4 H 0.037 0.963 5 C 0.133 3.867 6 H 0.100 0.900 7 N -0.705 5.705 8 C 0.602 3.398 9 O -0.522 6.522 10 C -0.070 4.070 11 C -0.122 4.122 12 C -0.196 4.196 13 C -0.082 4.082 14 C -0.012 4.012 15 O -0.161 6.161 16 C -0.145 4.145 17 C 0.130 3.870 18 N -0.599 5.599 19 C -0.247 4.247 20 H 0.082 0.918 21 C 0.049 3.951 22 N -0.898 5.898 23 Si 0.879 3.121 24 H -0.279 1.279 25 H -0.271 1.271 26 H -0.302 1.302 27 H 0.025 0.975 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.404 0.596 33 H 0.160 0.840 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.208 0.792 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.577 -1.234 -13.079 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.054 0.946 5 C 0.028 3.972 6 H 0.118 0.882 7 N -0.354 5.354 8 C 0.387 3.613 9 O -0.400 6.400 10 C -0.122 4.122 11 C -0.142 4.142 12 C -0.197 4.197 13 C -0.139 4.139 14 C -0.082 4.082 15 O -0.056 6.056 16 C -0.185 4.185 17 C 0.005 3.995 18 N -0.326 5.326 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.152 4.152 22 N -0.539 5.539 23 Si 0.709 3.291 24 H -0.206 1.206 25 H -0.196 1.196 26 H -0.230 1.230 27 H 0.045 0.955 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.238 0.762 33 H 0.177 0.823 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.225 0.775 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.512 -1.465 -12.424 19.928 hybrid contribution -0.070 0.611 -1.611 1.724 sum 15.442 -0.854 -14.035 20.884 Atomic orbital electron populations 1.22102 0.94648 0.98863 1.05871 1.21821 0.97810 0.96402 0.99717 1.21416 0.89650 0.93337 0.91844 0.94592 1.22198 0.95745 0.99461 0.79750 0.88160 1.46016 1.13751 1.61104 1.14545 1.16535 0.82382 0.78846 0.83515 1.90868 1.53508 1.43729 1.51925 1.22199 0.92547 1.07081 0.90386 1.21822 0.97178 1.01263 0.93951 1.20482 0.97258 1.05906 0.96065 1.20171 0.95093 1.02187 0.96466 1.24202 0.90940 1.03248 0.89781 1.84091 1.40603 1.61962 1.18988 1.23193 0.99395 0.98015 0.97888 1.21781 0.85968 0.98248 0.93523 1.44538 1.01972 1.65807 1.20289 1.18372 0.82170 1.40415 0.96533 0.90020 1.25506 0.95161 0.96496 0.98086 1.69778 0.99105 1.48114 1.36914 0.87013 0.77832 0.78866 0.85355 1.20650 1.19642 1.23001 0.95543 0.87422 0.93986 0.94261 0.92262 0.76155 0.82274 0.91290 0.91493 0.91286 0.77532 0.91354 0.91074 0.92790 0.95153 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.30 37.16 0.31 -3.18 16 2 C -0.12 -2.38 5.46 -26.73 -0.15 -2.52 16 3 C 0.14 2.99 2.16 -66.95 -0.14 2.85 16 4 H 0.04 0.81 3.34 -51.93 -0.17 0.64 16 5 C 0.13 2.39 2.76 -66.10 -0.18 2.21 16 6 H 0.10 1.82 7.40 -51.93 -0.38 1.43 16 7 N -0.70 -11.58 5.20 -53.34 -0.28 -11.85 16 8 C 0.60 9.74 7.78 -12.87 -0.10 9.64 16 9 O -0.52 -9.61 16.60 5.19 0.09 -9.52 16 10 C -0.07 -0.98 7.13 -36.80 -0.26 -1.24 16 11 C -0.12 -1.47 10.57 -39.39 -0.42 -1.89 16 12 C -0.20 -1.91 6.14 -104.93 -0.64 -2.55 16 13 C -0.08 -0.54 10.39 36.00 0.37 -0.16 16 14 C -0.01 -0.11 12.00 29.63 0.36 0.24 16 15 O -0.16 -2.04 10.40 5.00 0.05 -1.99 16 16 C -0.15 -2.57 6.77 -24.58 -0.17 -2.73 16 17 C 0.13 2.56 7.23 -2.53 -0.02 2.55 16 18 N -0.60 -13.82 2.56 -162.57 -0.42 -14.24 16 19 C -0.25 -6.58 8.23 -15.06 -0.12 -6.70 16 20 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 21 C 0.05 1.35 3.61 -17.43 -0.06 1.28 16 22 N -0.90 -25.99 13.97 55.49 0.78 -25.22 16 23 Si 0.88 21.68 23.28 -169.99 -3.96 17.72 16 24 H -0.28 -6.66 6.09 56.52 0.34 -6.32 16 25 H -0.27 -6.58 7.10 56.52 0.40 -6.18 16 26 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.11 2.72 5.13 -51.93 -0.27 2.46 16 29 H 0.04 0.97 5.51 -51.93 -0.29 0.68 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.40 6.32 8.07 -40.82 -0.33 5.99 16 33 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.21 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 334.21 15.07 5.04 5.04 Total: -1.00 -30.40 334.21 -6.06 -36.46 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.13 Total: 5.81 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.23 Total: -2.21 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.08 Total: -51.31 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.14 Total: -11.51 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -3.96 Total: 17.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.40 -6.06 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087694247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.158 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds