Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47168 * 2 1 4 4 H 1.08996 * 109.99777 * 304.89699 * 3 2 1 5 5 C 1.54328 * 109.99052 * 183.85705 * 3 2 1 6 6 H 1.09002 * 110.51717 * 336.97483 * 5 3 2 7 7 N 1.46499 * 110.85350 * 100.19732 * 5 3 2 8 8 C 1.34774 * 120.00572 * 200.14785 * 7 5 3 9 9 O 1.21699 * 119.99290 * 359.97438 * 8 7 5 10 10 C 1.46650 * 120.00186 * 179.97438 * 8 7 5 11 11 C 1.36551 * 125.98917 * 180.02562 * 10 8 7 12 12 C 1.40363 * 106.70980 * 179.97438 * 11 10 8 13 13 C 1.50694 * 126.44253 * 179.97438 * 12 11 10 14 14 C 1.35134 * 107.11115 * 359.97438 * 12 11 10 15 15 O 1.33925 * 108.77264 * 359.77148 * 14 12 11 16 16 C 1.55152 * 103.02277 * 218.66616 * 5 3 2 17 17 C 1.54910 * 101.57974 * 35.30613 * 16 5 3 18 18 N 1.47024 * 109.88250 * 65.98969 * 3 2 1 19 19 C 1.36937 * 125.64711 * 298.39400 * 18 3 2 20 20 H 1.08001 * 119.99698 * 137.66376 * 19 18 3 21 21 C 1.38811 * 120.00174 * 317.66370 * 19 18 3 22 22 N 1.31612 * 120.00077 * 165.29696 * 21 19 18 23 23 Si 1.86795 * 119.99943 * 345.29056 * 21 19 18 24 24 H 1.48500 * 109.46981 * 90.64905 * 23 21 19 25 25 H 1.48504 * 109.47384 * 330.65296 * 23 21 19 26 26 H 1.48495 * 109.47247 * 210.65317 * 23 21 19 27 27 H 1.08999 * 109.47332 * 172.85736 * 1 2 3 28 28 H 1.08994 * 109.47114 * 292.86209 * 1 2 3 29 29 H 1.09003 * 109.46625 * 52.86045 * 1 2 3 30 30 H 1.09000 * 109.47081 * 240.00133 * 2 1 3 31 31 H 1.09003 * 109.46583 * 119.99643 * 2 1 3 32 32 H 0.97005 * 119.99573 * 20.13903 * 7 5 3 33 33 H 1.08000 * 126.64277 * 359.92780 * 11 10 8 34 34 H 1.09004 * 109.46684 * 89.99924 * 13 12 11 35 35 H 1.09002 * 109.47346 * 209.99830 * 13 12 11 36 36 H 1.09001 * 109.47296 * 330.00681 * 13 12 11 37 37 H 1.08003 * 125.60689 * 179.97438 * 14 12 11 38 38 H 1.09004 * 111.00712 * 277.23419 * 16 5 3 39 39 H 1.08998 * 111.00975 * 153.37963 * 16 5 3 40 40 H 1.09004 * 110.36479 * 204.15215 * 17 16 5 41 41 H 1.08999 * 110.36730 * 81.83661 * 17 16 5 42 42 H 0.97006 * 120.00357 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6119 1.9893 -0.8401 5 6 3.5802 1.4576 -0.0976 6 1 3.9946 0.5131 0.2551 7 7 4.0132 1.7352 -1.4693 8 6 5.2579 1.4013 -1.8638 9 8 6.0223 0.8696 -1.0802 10 6 5.6910 1.6788 -3.2371 11 6 6.9177 1.3934 -3.7647 12 6 6.8937 1.8268 -5.0995 13 6 8.0218 1.7269 -6.0936 14 6 5.6687 2.3507 -5.3255 15 8 4.9451 2.2548 -4.2026 16 6 3.9792 2.6198 0.8498 17 6 2.9122 2.4916 1.9656 18 7 1.6763 2.1015 1.2630 19 6 0.4009 2.3125 1.7146 20 1 0.1613 2.1437 2.7541 21 6 -0.5840 2.7434 0.8364 22 7 -1.8517 2.6712 1.1826 23 14 -0.1100 3.4258 -0.8366 24 1 -0.0756 2.3222 -1.8296 25 1 1.2314 4.0573 -0.7518 26 1 -1.1089 4.4403 -1.2584 27 1 -0.3634 -1.0197 -0.1278 28 1 -0.3633 0.3992 0.9469 29 1 -0.3633 0.6205 -0.8193 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.4039 2.1593 -2.0937 33 1 7.7462 0.9255 -3.2537 34 1 7.9529 0.7788 -6.6271 35 1 7.9534 2.5499 -6.8050 36 1 8.9752 1.7793 -5.5678 37 1 5.3281 2.7737 -6.2590 38 1 3.9008 3.5816 0.3429 39 1 4.9823 2.4713 1.2495 40 1 2.7755 3.4476 2.4712 41 1 3.2016 1.7214 2.6805 42 1 -2.5400 2.9720 0.5688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087694247.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = -18.736591 kcal Electronic energy + Delta-G solvation = -24045.103970 eV Core-core repulsion = 20605.709619 eV Total energy + Delta-G solvation = -3439.394351 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -43.73526 -41.08946 -39.49351 -35.90154 -35.14745 -34.27781 -33.78164 -31.89494 -30.92448 -28.77055 -28.03715 -26.37657 -24.57463 -23.33114 -22.22285 -22.11447 -21.73295 -20.86518 -19.08972 -18.60314 -17.83542 -17.47139 -17.40879 -16.72308 -16.24956 -15.76013 -15.47720 -15.19668 -14.98365 -14.60341 -14.41598 -14.11128 -14.07386 -13.94824 -13.73373 -13.59866 -13.49734 -13.16518 -13.01367 -12.63012 -12.56252 -12.36818 -12.16152 -11.96506 -11.77206 -11.64998 -11.42502 -11.27483 -10.75709 -10.43426 -10.27472 -9.58291 -8.67431 -8.18074 -5.62080 -0.02848 1.26525 1.31361 1.36731 1.45573 1.60608 2.02343 2.08256 2.40656 3.09626 3.31896 3.57290 3.66608 3.76371 3.80442 4.02612 4.04151 4.28600 4.32588 4.35042 4.45510 4.57020 4.62739 4.70372 4.83778 4.88474 4.89943 4.96764 5.00032 5.03674 5.06496 5.08068 5.14029 5.22324 5.30551 5.44718 5.50722 5.77885 5.81296 5.98605 6.20541 6.31017 6.83153 6.88901 7.53207 8.21876 9.00316 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.004438 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.071420 B = 6308.259459 C = 6808.795592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.141 3.859 4 H 0.026 0.974 5 C 0.144 3.856 6 H 0.103 0.897 7 N -0.704 5.704 8 C 0.606 3.394 9 O -0.551 6.551 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.204 4.204 13 C -0.081 4.081 14 C 0.003 3.997 15 O -0.174 6.174 16 C -0.133 4.133 17 C 0.126 3.874 18 N -0.614 5.614 19 C -0.233 4.233 20 H 0.046 0.954 21 C 0.010 3.990 22 N -0.940 5.940 23 Si 0.927 3.073 24 H -0.266 1.266 25 H -0.263 1.263 26 H -0.311 1.311 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.408 0.592 33 H 0.162 0.838 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.250 0.750 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.041 0.959 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.964 -1.239 -15.887 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.043 0.957 5 C 0.039 3.961 6 H 0.121 0.879 7 N -0.354 5.354 8 C 0.394 3.606 9 O -0.432 6.432 10 C -0.158 4.158 11 C -0.138 4.138 12 C -0.206 4.206 13 C -0.137 4.137 14 C -0.066 4.066 15 O -0.070 6.070 16 C -0.172 4.172 17 C 0.002 3.998 18 N -0.341 5.341 19 C -0.362 4.362 20 H 0.063 0.937 21 C -0.188 4.188 22 N -0.583 5.583 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.188 1.188 26 H -0.240 1.240 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.179 0.821 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.937 -1.476 -15.243 23.586 hybrid contribution -0.745 0.571 -0.753 1.204 sum 17.192 -0.904 -15.996 23.500 Atomic orbital electron populations 1.21950 0.96188 0.99544 1.03141 1.21795 0.96239 0.96342 1.01051 1.21455 0.91706 0.93242 0.90094 0.95661 1.21946 0.93473 0.99727 0.80931 0.87948 1.45906 1.14178 1.61439 1.13843 1.16722 0.81695 0.77911 0.84317 1.90840 1.54109 1.45069 1.53138 1.21781 0.93550 1.10334 0.90094 1.22102 0.96491 1.00033 0.95141 1.20863 0.98508 1.05613 0.95567 1.20262 0.93876 1.03511 0.96089 1.25141 0.90496 1.01169 0.89830 1.84075 1.41141 1.62144 1.19626 1.23100 0.99479 0.97824 0.96843 1.21885 0.85276 0.98404 0.94282 1.44615 1.01701 1.66545 1.21261 1.18114 0.83856 1.39179 0.95068 0.93674 1.25898 0.94843 0.97152 1.00949 1.69889 1.00092 1.50122 1.38239 0.86227 0.77395 0.78338 0.82392 1.19257 1.18835 1.23984 0.93441 0.91053 0.95402 0.91765 0.91949 0.75663 0.82054 0.90402 0.89483 0.91072 0.73381 0.91526 0.89129 0.93077 0.94103 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.62 8.30 71.98 0.60 -6.02 16 2 C -0.12 -4.46 5.46 30.60 0.17 -4.30 16 3 C 0.14 5.69 2.16 45.34 0.10 5.78 16 4 H 0.03 1.11 3.34 -2.39 -0.01 1.10 16 5 C 0.14 4.94 2.76 46.18 0.13 5.07 16 6 H 0.10 3.51 7.40 -2.39 -0.02 3.49 16 7 N -0.70 -21.88 5.20 -440.89 -2.29 -24.17 16 8 C 0.61 18.76 7.78 86.44 0.67 19.43 16 9 O -0.55 -19.64 16.60 -4.35 -0.07 -19.72 16 10 C -0.11 -2.78 7.13 24.07 0.17 -2.61 16 11 C -0.12 -2.60 10.57 22.39 0.24 -2.36 16 12 C -0.20 -3.32 6.14 -20.06 -0.12 -3.45 16 13 C -0.08 -0.76 10.39 71.23 0.74 -0.02 16 14 C 0.00 0.04 12.00 67.10 0.81 0.85 16 15 O -0.17 -3.97 10.40 -5.02 -0.05 -4.02 16 16 C -0.13 -4.45 6.77 31.98 0.22 -4.24 16 17 C 0.13 4.86 7.23 86.86 0.63 5.49 16 18 N -0.61 -28.18 2.56 -668.25 -1.71 -29.90 16 19 C -0.23 -12.71 8.23 84.03 0.69 -12.02 16 20 H 0.05 2.75 8.06 -2.91 -0.02 2.73 16 21 C 0.01 0.54 3.61 84.86 0.31 0.85 16 22 N -0.94 -56.13 13.97 21.65 0.30 -55.83 16 23 Si 0.93 44.82 23.28 68.60 1.60 46.42 16 24 H -0.27 -12.19 6.09 99.48 0.61 -11.58 16 25 H -0.26 -12.27 7.10 99.48 0.71 -11.57 16 26 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 3.67 5.13 -2.39 -0.01 3.66 16 29 H 0.03 1.26 5.51 -2.39 -0.01 1.25 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.41 12.01 8.07 -92.70 -0.75 11.26 16 33 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.25 1.35 8.06 -2.91 -0.02 1.32 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -67.03 334.21 3.29 -63.75 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.18 Total: 21.01 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.34 Total: 2.46 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -3.70 Total: -109.90 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.12 Total: -23.73 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.60 Total: 46.42 kcal Total: -67.03 3.29 -63.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087694247.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.010 kcal (2) G-P(sol) polarization free energy of solvation -67.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds