Wall clock time and date at job start Tue Mar 31 2020 07:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47103 * 2 1 4 4 N 1.46504 * 109.46808 * 180.02562 * 3 2 1 5 5 C 1.34227 * 125.74154 * 125.00590 * 4 3 2 6 6 C 1.38129 * 107.40766 * 179.97438 * 5 4 3 7 7 C 1.47281 * 126.42600 * 179.97438 * 6 5 4 8 8 O 1.21521 * 119.99721 * 184.93022 * 7 6 5 9 9 O 1.34753 * 120.00258 * 4.92144 * 7 6 5 10 10 C 1.45198 * 117.00149 * 183.39140 * 9 7 6 11 11 C 1.50702 * 112.84610 * 295.82089 * 10 9 7 12 12 H 1.07997 * 119.99646 * 117.69865 * 11 10 9 13 13 C 1.37878 * 120.00232 * 297.69392 * 11 10 9 14 14 N 1.31516 * 119.99777 * 173.32843 * 13 11 10 15 15 Si 1.86793 * 119.99930 * 353.33148 * 13 11 10 16 16 H 1.48503 * 109.47296 * 270.14466 * 15 13 11 17 17 H 1.48499 * 109.47626 * 30.14581 * 15 13 11 18 18 H 1.48506 * 109.46934 * 150.14384 * 15 13 11 19 19 C 1.53775 * 113.61578 * 67.02015 * 10 9 7 20 20 C 1.53952 * 87.02109 * 89.23103 * 19 10 9 21 21 C 1.53777 * 87.11106 * 25.36300 * 20 19 10 22 22 C 1.41342 * 107.14354 * 0.23709 * 6 5 4 23 23 C 1.50700 * 125.99012 * 179.75873 * 22 6 5 24 24 N 1.30433 * 108.01494 * 359.59705 * 22 6 5 25 25 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46981 * 300.00040 * 1 2 3 27 27 H 1.09002 * 109.47058 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.47397 * 239.99689 * 2 1 3 29 29 H 1.09001 * 109.47462 * 120.00329 * 2 1 3 30 30 H 1.09001 * 109.47235 * 60.00115 * 3 2 1 31 31 H 1.09002 * 109.47144 * 299.99923 * 3 2 1 32 32 H 1.07995 * 126.29588 * 359.97438 * 5 4 3 33 33 H 0.97001 * 119.99748 * 179.97438 * 14 13 11 34 34 H 1.09000 * 113.61398 * 203.74651 * 19 10 9 35 35 H 1.08999 * 113.61789 * 334.64966 * 19 10 9 36 36 H 1.09006 * 113.53779 * 270.81053 * 20 19 10 37 37 H 1.09001 * 113.74673 * 139.94718 * 20 19 10 38 38 H 1.09007 * 113.61383 * 220.09136 * 21 20 19 39 39 H 1.09003 * 113.69443 * 89.20230 * 21 20 19 40 40 H 1.08997 * 109.47373 * 90.00574 * 23 22 6 41 41 H 1.09002 * 109.46869 * 210.00140 * 23 22 6 42 42 H 1.08998 * 109.47107 * 329.99873 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2887 2.0675 -0.8932 6 6 5.6000 1.8186 -0.5376 7 6 6.8027 2.3059 -1.2343 8 8 7.9041 1.9420 -0.8720 9 8 6.6817 3.1551 -2.2735 10 6 7.9034 3.5346 -2.9604 11 6 8.8514 4.3103 -2.0825 12 1 9.8284 3.9094 -1.8564 13 6 8.4716 5.5318 -1.5680 14 7 9.2426 6.1476 -0.6986 15 14 6.8618 6.3119 -2.1059 16 1 7.0988 7.1640 -3.2988 17 1 5.8843 5.2466 -2.4448 18 1 6.3224 7.1454 -1.0015 19 6 8.5724 2.3733 -3.7143 20 6 7.7082 2.7679 -4.9258 21 6 7.6619 4.1858 -4.3324 22 6 5.5711 1.0035 0.6168 23 6 6.7721 0.4756 1.3584 24 7 4.3228 0.7913 0.9295 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9554 2.6567 -1.7347 33 1 8.9755 7.0072 -0.3370 34 1 9.6410 2.5155 -3.8756 35 1 8.3318 1.3916 -3.3064 36 1 6.7377 2.2720 -4.9482 37 1 8.2351 2.7101 -5.8782 38 1 6.6872 4.6653 -4.4227 39 1 8.4805 4.8257 -4.6623 40 1 7.0645 1.1877 2.1301 41 1 6.5225 -0.4793 1.8210 42 1 7.5978 0.3365 0.6606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122999992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:10 Heat of formation + Delta-G solvation = -10.278645 kcal Electronic energy + Delta-G solvation = -24079.082056 eV Core-core repulsion = 20640.054469 eV Total energy + Delta-G solvation = -3439.027587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.47387 -41.09120 -38.72127 -36.48443 -35.96875 -34.51889 -33.52267 -31.54382 -29.79252 -28.93251 -26.87045 -26.59019 -24.65331 -23.54612 -22.69256 -21.97382 -20.45170 -20.00927 -19.20070 -18.26444 -17.22844 -17.03204 -16.77107 -16.67152 -16.01727 -15.84737 -15.34120 -15.25885 -14.86130 -14.56997 -14.43735 -14.06098 -13.66822 -13.61928 -13.25339 -13.20164 -13.05563 -13.04828 -12.87737 -12.82101 -12.29875 -12.07762 -11.99182 -11.97388 -11.83679 -11.63409 -11.59330 -11.15200 -10.93468 -10.54278 -10.38427 -10.31215 -9.73003 -8.33945 -6.43122 0.45834 1.02100 1.31062 1.34911 1.38133 1.56345 2.16802 2.37485 2.43059 3.05849 3.27012 3.71663 3.87061 3.88295 3.89096 3.93912 4.10056 4.17029 4.25001 4.28341 4.46314 4.51843 4.53536 4.66811 4.70207 4.80184 4.86359 4.92583 4.94401 4.98461 5.09118 5.12899 5.13016 5.17862 5.33450 5.36912 5.44879 5.59426 5.65236 5.87550 5.93837 6.38851 6.49477 6.63967 7.24368 7.35777 8.81938 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004933 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.802157 B = 5674.461914 C = 5771.117509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.118 3.882 4 N -0.352 5.352 5 C 0.138 3.862 6 C -0.309 4.309 7 C 0.530 3.470 8 O -0.534 6.534 9 O -0.352 6.352 10 C 0.178 3.822 11 C -0.515 4.515 12 H 0.024 0.976 13 C 0.023 3.977 14 N -0.940 5.940 15 Si 0.926 3.074 16 H -0.257 1.257 17 H -0.208 1.208 18 H -0.301 1.301 19 C -0.144 4.144 20 C -0.114 4.114 21 C -0.125 4.125 22 C 0.119 3.881 23 C -0.075 4.075 24 N -0.313 5.313 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.221 0.779 33 H 0.265 0.735 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.379 -9.940 -3.992 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.000 4.000 4 N -0.129 5.129 5 C -0.015 4.015 6 C -0.321 4.321 7 C 0.375 3.625 8 O -0.424 6.424 9 O -0.269 6.269 10 C 0.143 3.857 11 C -0.552 4.552 12 H 0.042 0.958 13 C -0.176 4.176 14 N -0.580 5.580 15 Si 0.748 3.252 16 H -0.182 1.182 17 H -0.130 1.130 18 H -0.228 1.228 19 C -0.182 4.182 20 C -0.151 4.151 21 C -0.163 4.163 22 C -0.048 4.048 23 C -0.134 4.134 24 N -0.135 5.135 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.238 0.762 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.994 -10.468 -2.996 23.650 hybrid contribution 1.087 1.123 0.054 1.564 sum -19.907 -9.345 -2.943 22.188 Atomic orbital electron populations 1.21677 0.92353 1.03004 1.03143 1.21740 0.97956 0.94513 1.02676 1.22439 0.70760 1.00263 1.06548 1.48853 1.08107 1.36716 1.19210 1.23624 0.89110 0.93922 0.94853 1.19740 0.92131 1.15555 1.04719 1.20232 0.87973 0.75821 0.78494 1.90732 1.29135 1.56939 1.65563 1.86473 1.39727 1.57845 1.42852 1.21144 0.80952 0.94134 0.89491 1.21194 1.00409 1.02578 1.31046 0.95775 1.25961 1.00804 0.97491 0.93342 1.70123 1.40914 1.16704 1.30240 0.86124 0.81259 0.79595 0.78189 1.18184 1.12977 1.22783 1.23278 0.99860 0.97392 0.97686 1.22819 1.00199 0.94945 0.97169 1.23202 1.02259 0.97822 0.92980 1.22640 0.94221 0.94535 0.93363 1.20313 0.92016 1.01519 0.99541 1.77029 1.00549 1.21394 1.14537 0.91750 0.91694 0.90943 0.91955 0.92243 0.88254 0.84805 0.76243 0.92595 0.90686 0.93265 0.88993 0.89049 0.90652 0.88978 0.90580 0.88734 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.77 6.11 30.59 0.19 -1.58 16 3 C 0.12 1.68 6.49 86.38 0.56 2.24 16 4 N -0.35 -8.76 3.65 -346.23 -1.26 -10.02 16 5 C 0.14 3.85 11.29 84.30 0.95 4.80 16 6 C -0.31 -11.69 6.12 -20.16 -0.12 -11.82 16 7 C 0.53 24.71 7.33 70.20 0.51 25.22 16 8 O -0.53 -28.65 13.09 19.77 0.26 -28.39 16 9 O -0.35 -16.01 7.66 -56.63 -0.43 -16.45 16 10 C 0.18 8.47 0.10 -11.01 0.00 8.47 16 11 C -0.51 -30.81 7.88 25.60 0.20 -30.61 16 12 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 13 C 0.02 1.37 5.47 84.65 0.46 1.83 16 14 N -0.94 -61.07 13.96 21.45 0.30 -60.77 16 15 Si 0.93 43.84 25.15 68.60 1.73 45.57 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.21 -8.78 5.43 99.48 0.54 -8.24 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 C -0.14 -6.06 6.93 31.18 0.22 -5.84 16 20 C -0.11 -3.65 8.03 31.18 0.25 -3.40 16 21 C -0.13 -4.81 5.65 31.12 0.18 -4.64 16 22 C 0.12 4.25 7.26 43.53 0.32 4.56 16 23 C -0.08 -2.51 9.97 71.24 0.71 -1.80 16 24 N -0.31 -9.81 12.33 -46.65 -0.58 -10.38 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.13 1.01 8.06 -2.39 -0.02 0.99 16 32 H 0.22 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 34 H 0.07 3.24 8.09 -2.39 -0.02 3.22 16 35 H 0.05 2.11 7.41 -2.39 -0.02 2.09 16 36 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 2.64 6.79 -2.38 -0.02 2.62 16 39 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 2.89 6.47 -2.39 -0.02 2.87 16 Total: -1.00 -80.77 344.79 5.98 -74.79 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.83 Total: 18.69 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 5.14 Total: -13.03 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -1.54 Total: -81.18 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -0.17 Total: -44.84 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.73 Total: 45.57 kcal Total: -80.77 5.98 -74.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122999992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.509 kcal (2) G-P(sol) polarization free energy of solvation -80.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds