Wall clock time and date at job start Tue Mar 31 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47172 * 2 1 4 4 N 1.46901 * 109.46844 * 176.66697 * 3 2 1 5 5 C 1.46908 * 111.00021 * 59.43968 * 4 3 2 6 6 C 1.50699 * 109.47291 * 66.03774 * 5 4 3 7 7 H 1.07998 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99656 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00120 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99672 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47804 * 89.99960 * 10 8 6 12 12 H 1.48500 * 109.47216 * 210.00384 * 10 8 6 13 13 H 1.48509 * 109.47090 * 329.99826 * 10 8 6 14 14 C 1.46893 * 111.00293 * 295.47956 * 4 3 2 15 15 C 1.50693 * 109.47412 * 288.42030 * 14 4 3 16 16 C 1.38369 * 119.45507 * 94.62365 * 15 14 4 17 17 C 1.38333 * 119.31048 * 180.02562 * 16 15 14 18 18 C 1.40078 * 118.28499 * 0.27440 * 17 16 15 19 19 C 1.47719 * 120.56555 * 179.70285 * 18 17 16 20 20 O 1.21471 * 120.00049 * 0.02562 * 19 18 17 21 21 O 1.34714 * 120.00256 * 180.02562 * 19 18 17 22 22 C 1.45191 * 117.00482 * 180.02562 * 21 19 18 23 23 C 1.39577 * 118.86964 * 359.46230 * 18 17 16 24 24 N 1.31686 * 120.55738 * 0.55284 * 23 18 17 25 25 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46806 * 299.99976 * 1 2 3 27 27 H 1.08993 * 109.47284 * 59.99914 * 1 2 3 28 28 H 1.09003 * 109.46834 * 239.99411 * 2 1 3 29 29 H 1.09003 * 109.47361 * 120.00258 * 2 1 3 30 30 H 1.08993 * 109.46991 * 56.67100 * 3 2 1 31 31 H 1.08995 * 109.47264 * 296.66457 * 3 2 1 32 32 H 1.09000 * 109.47109 * 186.04779 * 5 4 3 33 33 H 1.09004 * 109.46571 * 306.03935 * 5 4 3 34 34 H 0.97003 * 120.00216 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47173 * 168.41844 * 14 4 3 36 36 H 1.08998 * 109.46798 * 48.42731 * 14 4 3 37 37 H 1.08006 * 120.34184 * 0.04821 * 16 15 14 38 38 H 1.07999 * 120.86228 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.47656 * 59.99257 * 22 21 19 40 40 H 1.08996 * 109.47484 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.46771 * 299.99708 * 22 21 19 42 42 H 1.08004 * 119.72169 * 180.27003 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5068 1.4432 0.0805 5 6 4.0968 0.7233 -1.0561 6 6 3.8072 1.4733 -2.3307 7 1 3.2419 2.3930 -2.2995 8 6 4.2641 0.9854 -3.5366 9 7 4.9521 -0.1347 -3.5746 10 14 3.9058 1.9154 -5.1165 11 1 4.9985 2.8862 -5.3783 12 1 3.8150 0.9558 -6.2461 13 1 2.6186 2.6437 -4.9811 14 6 3.9643 0.8776 1.3567 15 6 3.6632 1.8454 2.4718 16 6 2.4926 1.7060 3.1962 17 6 2.2189 2.5964 4.2189 18 6 3.1447 3.6155 4.4772 19 6 2.9000 4.5977 5.5530 20 8 1.8892 4.5256 6.2229 21 8 3.7977 5.5735 5.7913 22 6 3.4920 6.5029 6.8641 23 6 4.3047 3.6840 3.7040 24 7 4.5199 2.8120 2.7409 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6288 1.9732 0.8586 31 1 1.7264 1.9388 -0.9183 32 1 5.1751 0.6459 -0.9169 33 1 3.6657 -0.2760 -1.1165 34 1 5.2739 -0.4778 -4.4229 35 1 5.0387 0.6991 1.3107 36 1 3.4474 -0.0637 1.5430 37 1 1.7999 0.9100 2.9658 38 1 1.3130 2.5107 4.8005 39 1 3.3975 5.9564 7.8024 40 1 4.2946 7.2354 6.9499 41 1 2.5546 7.0144 6.6455 42 1 5.0299 4.4615 3.8942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139493449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:16 Heat of formation + Delta-G solvation = -48.075008 kcal Electronic energy + Delta-G solvation = -23071.111909 eV Core-core repulsion = 19630.445348 eV Total energy + Delta-G solvation = -3440.666560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.79 seconds Orbital eigenvalues (eV) -40.92784 -39.82914 -37.43194 -36.66016 -33.02006 -32.85314 -32.33418 -31.39976 -28.55094 -27.29861 -26.44595 -24.57138 -23.76412 -22.67100 -22.18321 -21.11080 -19.37158 -18.28861 -17.41160 -16.59738 -16.40297 -16.20127 -15.65234 -15.29625 -14.80241 -14.58335 -14.28904 -14.05283 -13.64777 -13.57117 -13.32559 -13.03926 -12.98804 -12.48711 -12.40670 -11.99166 -11.65854 -11.34371 -11.14616 -11.07741 -11.01242 -10.91421 -10.89606 -10.69118 -10.54347 -10.04569 -9.95089 -9.77606 -9.41913 -9.23534 -9.07123 -8.42921 -7.24164 -6.02962 -4.03529 0.44238 1.20455 2.36839 2.42033 3.32726 3.38836 3.42009 3.73741 4.23143 4.43585 4.57073 4.68324 4.72405 4.82976 4.90452 4.91429 5.09817 5.22338 5.30628 5.33632 5.43509 5.47339 5.62146 5.72621 5.77568 5.88464 5.95432 6.00807 6.10212 6.14698 6.26095 6.33283 6.42925 6.54497 6.69320 6.88135 7.26712 7.35210 7.47402 7.77582 7.97860 8.06954 8.14795 8.50540 9.03256 9.60316 11.07826 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.003402 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.394973 B = 8229.276087 C = 8843.282440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.062 3.938 4 N -0.524 5.524 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.086 3.914 15 C 0.196 3.804 16 C -0.181 4.181 17 C -0.011 4.011 18 C -0.200 4.200 19 C 0.519 3.481 20 O -0.510 6.510 21 O -0.354 6.354 22 C 0.037 3.963 23 C 0.165 3.835 24 N -0.471 5.471 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.002 0.998 34 H 0.261 0.739 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 5.968 18.002 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.067 4.067 4 N -0.247 5.247 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.042 4.042 15 C 0.058 3.942 16 C -0.201 4.201 17 C -0.036 4.036 18 C -0.204 4.204 19 C 0.364 3.636 20 O -0.400 6.400 21 O -0.270 6.270 22 C -0.056 4.056 23 C 0.005 3.995 24 N -0.179 5.179 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.082 0.918 40 H 0.122 0.878 41 H 0.082 0.918 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.066 6.397 17.548 19.115 hybrid contribution -1.304 -0.300 -0.192 1.352 sum -5.370 6.097 17.356 19.163 Atomic orbital electron populations 1.21660 0.96407 1.00792 1.01264 1.22186 0.95559 1.00199 1.02369 1.22132 0.88268 0.94575 1.01686 1.62314 1.06634 1.55065 1.00693 1.19830 0.94800 0.92212 0.86462 1.21108 1.34278 1.08400 0.90441 0.91966 1.24949 0.95320 0.95088 0.99123 1.69945 1.37245 1.20497 1.26142 0.86525 0.78742 0.79509 0.82795 1.20638 1.21386 1.19909 1.21137 1.02320 0.92201 0.88569 1.21818 0.88427 0.91380 0.92527 1.22038 0.99136 1.01727 0.97240 1.21621 0.97334 0.90456 0.94211 1.20058 1.00383 0.99263 1.00705 1.21007 0.80655 0.79700 0.82222 1.90823 1.27678 1.73057 1.48402 1.86548 1.48158 1.39491 1.52810 1.23290 1.02760 0.91316 0.88252 1.23261 0.93396 0.95012 0.87797 1.67721 1.31994 1.03010 1.15191 0.93480 0.93563 0.92685 0.90218 0.93020 0.93134 0.89901 0.95115 0.98050 0.92944 0.89083 0.93010 0.83928 0.83743 0.91834 0.87829 0.91775 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 37.16 0.37 -1.59 16 2 C -0.16 -2.70 5.26 -26.73 -0.14 -2.84 16 3 C 0.06 1.13 4.95 -3.82 -0.02 1.11 16 4 N -0.52 -10.80 4.65 -237.52 -1.10 -11.90 16 5 C 0.19 4.75 4.46 -4.97 -0.02 4.73 16 6 C -0.50 -13.76 8.52 -34.44 -0.29 -14.06 16 7 H 0.06 1.71 7.10 -52.49 -0.37 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.13 13.28 55.43 0.74 -25.40 16 10 Si 0.90 21.47 29.54 -169.99 -5.02 16.44 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.09 1.49 5.16 -4.98 -0.03 1.46 16 15 C 0.20 3.04 5.84 -82.51 -0.48 2.56 16 16 C -0.18 -2.33 8.30 -39.50 -0.33 -2.65 16 17 C -0.01 -0.13 9.72 -38.86 -0.38 -0.51 16 18 C -0.20 -2.55 5.89 -104.83 -0.62 -3.17 16 19 C 0.52 6.48 7.91 34.60 0.27 6.75 16 20 O -0.51 -7.29 16.21 -19.24 -0.31 -7.60 16 21 O -0.35 -3.74 9.84 -40.53 -0.40 -4.14 16 22 C 0.04 0.27 10.56 101.05 1.07 1.34 16 23 C 0.16 2.19 10.79 -17.12 -0.18 2.00 16 24 N -0.47 -7.57 10.25 -9.12 -0.09 -7.66 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.57 6.45 -51.93 -0.33 1.23 16 29 H 0.05 0.78 6.15 -51.93 -0.32 0.46 16 30 H 0.05 0.83 6.32 -51.93 -0.33 0.50 16 31 H 0.08 1.69 6.87 -51.93 -0.36 1.34 16 32 H 0.03 0.83 7.87 -51.93 -0.41 0.42 16 33 H 0.00 0.05 6.05 -51.93 -0.31 -0.27 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.64 7.82 -51.93 -0.41 1.23 16 36 H 0.05 0.81 5.81 -51.93 -0.30 0.50 16 37 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.14 1.53 7.74 -52.49 -0.41 1.12 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.17 1.83 7.62 -52.48 -0.40 1.43 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -31.26 348.84 -7.86 -39.11 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.04 Total: -0.72 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -0.88 Total: -3.39 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.46 Total: -44.96 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.71 Total: -11.74 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.26 -7.86 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139493449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.963 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.79 seconds