Wall clock time and date at job start Tue Mar 31 2020 07:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47172 * 2 1 4 4 N 1.46901 * 109.46844 * 176.66697 * 3 2 1 5 5 C 1.46908 * 111.00021 * 59.43968 * 4 3 2 6 6 C 1.50699 * 109.47291 * 66.03774 * 5 4 3 7 7 H 1.07998 * 119.99753 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99656 * 180.02562 * 6 5 4 9 9 N 1.31504 * 120.00120 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99672 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47804 * 89.99960 * 10 8 6 12 12 H 1.48500 * 109.47216 * 210.00384 * 10 8 6 13 13 H 1.48509 * 109.47090 * 329.99826 * 10 8 6 14 14 C 1.46893 * 111.00293 * 295.47956 * 4 3 2 15 15 C 1.50693 * 109.47412 * 288.42030 * 14 4 3 16 16 C 1.38369 * 119.45507 * 94.62365 * 15 14 4 17 17 C 1.38333 * 119.31048 * 180.02562 * 16 15 14 18 18 C 1.40078 * 118.28499 * 0.27440 * 17 16 15 19 19 C 1.47719 * 120.56555 * 179.70285 * 18 17 16 20 20 O 1.21471 * 120.00049 * 0.02562 * 19 18 17 21 21 O 1.34714 * 120.00256 * 180.02562 * 19 18 17 22 22 C 1.45191 * 117.00482 * 180.02562 * 21 19 18 23 23 C 1.39577 * 118.86964 * 359.46230 * 18 17 16 24 24 N 1.31686 * 120.55738 * 0.55284 * 23 18 17 25 25 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46806 * 299.99976 * 1 2 3 27 27 H 1.08993 * 109.47284 * 59.99914 * 1 2 3 28 28 H 1.09003 * 109.46834 * 239.99411 * 2 1 3 29 29 H 1.09003 * 109.47361 * 120.00258 * 2 1 3 30 30 H 1.08993 * 109.46991 * 56.67100 * 3 2 1 31 31 H 1.08995 * 109.47264 * 296.66457 * 3 2 1 32 32 H 1.09000 * 109.47109 * 186.04779 * 5 4 3 33 33 H 1.09004 * 109.46571 * 306.03935 * 5 4 3 34 34 H 0.97003 * 120.00216 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47173 * 168.41844 * 14 4 3 36 36 H 1.08998 * 109.46798 * 48.42731 * 14 4 3 37 37 H 1.08006 * 120.34184 * 0.04821 * 16 15 14 38 38 H 1.07999 * 120.86228 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.47656 * 59.99257 * 22 21 19 40 40 H 1.08996 * 109.47484 * 179.97438 * 22 21 19 41 41 H 1.09004 * 109.46771 * 299.99708 * 22 21 19 42 42 H 1.08004 * 119.72169 * 180.27003 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5068 1.4432 0.0805 5 6 4.0968 0.7233 -1.0561 6 6 3.8072 1.4733 -2.3307 7 1 3.2419 2.3930 -2.2995 8 6 4.2641 0.9854 -3.5366 9 7 4.9521 -0.1347 -3.5746 10 14 3.9058 1.9154 -5.1165 11 1 4.9985 2.8862 -5.3783 12 1 3.8150 0.9558 -6.2461 13 1 2.6186 2.6437 -4.9811 14 6 3.9643 0.8776 1.3567 15 6 3.6632 1.8454 2.4718 16 6 2.4926 1.7060 3.1962 17 6 2.2189 2.5964 4.2189 18 6 3.1447 3.6155 4.4772 19 6 2.9000 4.5977 5.5530 20 8 1.8892 4.5256 6.2229 21 8 3.7977 5.5735 5.7913 22 6 3.4920 6.5029 6.8641 23 6 4.3047 3.6840 3.7040 24 7 4.5199 2.8120 2.7409 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6288 1.9732 0.8586 31 1 1.7264 1.9388 -0.9183 32 1 5.1751 0.6459 -0.9169 33 1 3.6657 -0.2760 -1.1165 34 1 5.2739 -0.4778 -4.4229 35 1 5.0387 0.6991 1.3107 36 1 3.4474 -0.0637 1.5430 37 1 1.7999 0.9100 2.9658 38 1 1.3130 2.5107 4.8005 39 1 3.3975 5.9564 7.8024 40 1 4.2946 7.2354 6.9499 41 1 2.5546 7.0144 6.6455 42 1 5.0299 4.4615 3.8942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139493449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:09 Heat of formation + Delta-G solvation = -67.824442 kcal Electronic energy + Delta-G solvation = -23071.968308 eV Core-core repulsion = 19630.445348 eV Total energy + Delta-G solvation = -3441.522960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.92155 -40.86513 -38.93260 -37.57238 -34.87127 -34.16111 -33.44800 -32.78238 -29.79017 -28.61404 -27.73152 -26.08178 -24.83412 -24.04418 -23.61368 -22.15347 -20.89342 -19.22894 -18.40552 -18.32900 -17.44890 -17.27813 -17.02152 -16.84205 -16.27888 -15.98697 -15.48165 -15.33088 -14.87045 -14.71839 -14.33357 -14.18174 -14.12967 -14.09064 -13.33906 -13.25823 -13.04094 -12.93138 -12.67061 -12.61533 -12.47917 -12.31102 -12.22929 -11.87545 -11.83696 -11.77556 -11.34491 -11.29156 -10.99214 -10.57176 -10.47015 -10.18429 -8.88448 -8.16847 -6.25058 -0.60324 0.20488 1.36867 1.41606 1.42928 1.53202 1.59855 2.41545 2.65795 3.14697 3.16175 3.45708 3.63956 3.73481 3.78579 3.96177 4.11320 4.16778 4.21548 4.31009 4.35710 4.44156 4.52428 4.66053 4.67746 4.72755 4.75834 4.88933 4.92876 4.98063 5.08259 5.15057 5.22039 5.23123 5.36179 5.46912 5.48712 5.54342 5.69608 6.09234 6.36909 6.55925 6.63459 6.89769 6.92805 7.43502 8.93706 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.003402 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.394973 B = 8229.276087 C = 8843.282440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.067 3.933 4 N -0.538 5.538 5 C 0.209 3.791 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.266 1.266 14 C 0.091 3.909 15 C 0.176 3.824 16 C -0.171 4.171 17 C -0.004 4.004 18 C -0.199 4.199 19 C 0.524 3.476 20 O -0.530 6.530 21 O -0.356 6.356 22 C 0.029 3.971 23 C 0.162 3.838 24 N -0.504 5.504 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.055 0.945 32 H -0.002 1.002 33 H -0.013 1.013 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.066 0.934 40 H 0.134 0.866 41 H 0.064 0.936 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 7.058 19.445 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.195 4.195 3 C -0.061 4.061 4 N -0.262 5.262 5 C 0.083 3.917 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.190 1.190 14 C -0.037 4.037 15 C 0.039 3.961 16 C -0.191 4.191 17 C -0.030 4.030 18 C -0.202 4.202 19 C 0.369 3.631 20 O -0.421 6.421 21 O -0.272 6.272 22 C -0.064 4.064 23 C 0.003 3.997 24 N -0.213 5.213 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.016 0.984 33 H 0.004 0.996 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.085 0.915 40 H 0.152 0.848 41 H 0.083 0.917 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.630 7.504 19.009 21.198 hybrid contribution -0.784 -0.560 -0.498 1.084 sum -6.414 6.943 18.512 20.785 Atomic orbital electron populations 1.21622 0.93809 1.02009 1.02114 1.22063 0.97776 0.98427 1.01227 1.22091 0.86797 0.95860 1.01364 1.62129 1.08155 1.54987 1.00896 1.19414 0.92887 0.91685 0.87697 1.21401 1.33989 1.08296 0.91806 0.92513 1.25785 0.95086 0.95913 1.02498 1.70062 1.38249 1.21958 1.27033 0.85497 0.78818 0.78287 0.78709 1.20225 1.20751 1.19027 1.21061 1.01358 0.93657 0.87669 1.21545 0.89899 0.91649 0.92964 1.22152 0.98168 1.02177 0.96605 1.21876 0.97740 0.89640 0.93729 1.20206 1.00161 0.99406 1.00440 1.20913 0.80524 0.79858 0.81760 1.90815 1.28506 1.73672 1.49103 1.86540 1.47552 1.39350 1.53751 1.23629 1.04169 0.91209 0.87344 1.23493 0.94139 0.94823 0.87197 1.67620 1.33088 1.03976 1.16653 0.92117 0.91018 0.93521 0.94204 0.91283 0.90576 0.92625 0.98387 0.99576 0.92794 0.90973 0.91212 0.81647 0.81643 0.91502 0.84776 0.91717 0.79730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.91 71.98 0.71 -2.75 16 2 C -0.16 -5.03 5.26 30.59 0.16 -4.87 16 3 C 0.07 2.42 4.95 86.30 0.43 2.85 16 4 N -0.54 -22.70 4.65 -905.39 -4.21 -26.91 16 5 C 0.21 10.86 4.46 85.56 0.38 11.24 16 6 C -0.52 -29.12 8.52 25.60 0.22 -28.90 16 7 H 0.06 3.19 7.10 -2.91 -0.02 3.17 16 8 C 0.01 0.29 5.46 84.66 0.46 0.76 16 9 N -0.93 -55.70 13.28 21.45 0.28 -55.42 16 10 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C 0.09 3.16 5.16 85.56 0.44 3.60 16 15 C 0.18 5.32 5.84 42.57 0.25 5.56 16 16 C -0.17 -3.96 8.30 22.32 0.19 -3.77 16 17 C 0.00 -0.10 9.72 22.74 0.22 0.12 16 18 C -0.20 -4.64 5.89 -20.00 -0.12 -4.76 16 19 C 0.52 11.98 7.91 70.33 0.56 12.53 16 20 O -0.53 -14.00 16.21 19.93 0.32 -13.68 16 21 O -0.36 -6.76 9.84 -56.24 -0.55 -7.31 16 22 C 0.03 0.35 10.56 113.37 1.20 1.55 16 23 C 0.16 4.12 10.79 85.04 0.92 5.03 16 24 N -0.50 -16.01 10.25 -182.77 -1.87 -17.89 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.60 6.45 -2.39 -0.02 1.59 16 29 H 0.07 1.96 6.15 -2.39 -0.01 1.95 16 30 H 0.08 2.36 6.32 -2.39 -0.02 2.35 16 31 H 0.06 2.30 6.87 -2.39 -0.02 2.29 16 32 H 0.00 -0.11 7.87 -2.39 -0.02 -0.13 16 33 H -0.01 -0.72 6.05 -2.39 -0.01 -0.74 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.07 2.73 7.82 -2.38 -0.02 2.71 16 36 H 0.07 2.13 5.81 -2.39 -0.01 2.11 16 37 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.17 2.89 7.74 -2.91 -0.02 2.87 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.19 3.80 7.62 -2.91 -0.02 3.77 16 Total: -1.00 -69.18 348.84 3.03 -66.15 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.02 Total: 10.27 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 6.01 Total: -1.80 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -5.80 Total: -100.21 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.23 Total: -20.99 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.18 3.03 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139493449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.676 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds