Wall clock time and date at job start Tue Mar 31 2020 06:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47416 * 2 1 4 4 H 1.09001 * 109.46951 * 305.00303 * 3 2 1 5 5 C 1.50704 * 109.47226 * 185.00280 * 3 2 1 6 6 H 1.08000 * 119.99622 * 239.99713 * 5 3 2 7 7 C 1.37876 * 120.00001 * 60.00006 * 5 3 2 8 8 N 1.31508 * 120.00061 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47133 * 120.00082 * 9 7 5 12 12 H 1.48498 * 109.47122 * 239.99494 * 9 7 5 13 13 N 1.46499 * 109.47306 * 65.00280 * 3 2 1 14 14 C 1.38231 * 119.99490 * 275.00251 * 13 3 2 15 15 N 1.32423 * 119.83521 * 359.97438 * 14 13 3 16 16 C 1.31842 * 121.78474 * 180.02562 * 15 14 13 17 17 C 1.50692 * 119.38808 * 179.97438 * 16 15 14 18 18 C 1.38403 * 121.22728 * 0.02562 * 16 15 14 19 19 C 1.38303 * 119.51441 * 359.97438 * 18 16 15 20 20 C 1.50706 * 120.81372 * 180.02562 * 19 18 16 21 21 C 1.40041 * 118.36690 * 0.27794 * 19 18 16 22 22 C 1.47280 * 120.61529 * 179.72187 * 21 19 18 23 23 O 1.21522 * 120.00086 * 90.00515 * 22 21 19 24 24 O 1.34770 * 119.99934 * 269.99933 * 22 21 19 25 25 C 1.45204 * 116.99780 * 179.97438 * 24 22 21 26 26 H 1.09000 * 109.47353 * 59.99664 * 1 2 3 27 27 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46648 * 300.00183 * 1 2 3 29 29 H 1.09004 * 109.47131 * 239.99601 * 2 1 3 30 30 H 1.09000 * 109.47353 * 120.00335 * 2 1 3 31 31 H 0.97006 * 119.99975 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00386 * 94.99890 * 13 3 2 33 33 H 1.08995 * 109.47536 * 270.02139 * 17 16 15 34 34 H 1.09004 * 109.46976 * 30.02440 * 17 16 15 35 35 H 1.09009 * 109.47272 * 150.01859 * 17 16 15 36 36 H 1.07997 * 120.23767 * 179.97438 * 18 16 15 37 37 H 1.08999 * 109.47015 * 90.00537 * 20 19 18 38 38 H 1.09000 * 109.46646 * 209.99689 * 20 19 18 39 39 H 1.09000 * 109.47248 * 330.00407 * 20 19 18 40 40 H 1.09003 * 109.46599 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47241 * 300.00252 * 25 24 22 42 42 H 1.09002 * 109.46682 * 60.00865 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3813 10 1 6.5989 1.5439 -0.1932 11 1 6.4961 -0.5192 -1.4629 12 1 6.4000 1.6154 -2.6093 13 7 1.6526 2.0975 1.2518 14 6 0.4041 2.6789 1.3699 15 7 -0.4389 2.6423 0.3492 16 6 -1.6385 3.1848 0.4196 17 6 -2.5541 3.1121 -0.7751 18 6 -2.0721 3.8206 1.5699 19 6 -1.2338 3.8893 2.6677 20 6 -1.6762 4.5740 3.9353 21 6 0.0382 3.3117 2.5707 22 6 0.9733 3.3615 3.7075 23 8 0.9726 2.4708 4.5343 24 8 1.8297 4.3947 3.8309 25 6 2.7220 4.3782 4.9763 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0619 -2.9496 32 1 2.2720 2.1231 1.9977 33 1 -2.3930 3.9834 -1.4099 34 1 -2.3411 2.2055 -1.3415 35 1 -3.5906 3.0949 -0.4380 36 1 -3.0579 4.2599 1.6098 37 1 -2.1644 3.8502 4.5879 38 1 -0.8081 4.9938 4.4434 39 1 -2.3761 5.3732 3.6912 40 1 3.3561 5.2645 4.9555 41 1 2.1346 4.3735 5.8944 42 1 3.3449 3.4845 4.9387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:24 Heat of formation + Delta-G solvation = -55.177469 kcal Electronic energy + Delta-G solvation = -24356.249455 eV Core-core repulsion = 20915.274908 eV Total energy + Delta-G solvation = -3440.974546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.67777 -39.38891 -36.42114 -36.19682 -33.87168 -33.29468 -31.42061 -30.13480 -28.74501 -27.45205 -27.17430 -26.34997 -23.20162 -22.65394 -21.34017 -20.68672 -19.39471 -17.76863 -17.33452 -16.78419 -16.57293 -15.89184 -15.40158 -14.82044 -14.60630 -14.31001 -13.74510 -13.51641 -13.30210 -13.06184 -12.98624 -12.79581 -12.60954 -12.40320 -12.17699 -12.02391 -11.88074 -11.55104 -11.50979 -11.26107 -10.92782 -10.87921 -10.68166 -10.48652 -10.33430 -10.19004 -9.68605 -9.46531 -9.11924 -8.88953 -8.81287 -8.43312 -7.00124 -6.14211 -4.22843 1.35723 1.88262 2.28051 2.95962 3.22742 3.30716 3.33841 3.93308 4.18428 4.34587 4.74034 4.82929 5.07429 5.14361 5.17590 5.22108 5.26656 5.43831 5.53782 5.54856 5.57778 5.69246 5.83432 5.87184 5.95410 6.19428 6.28343 6.39372 6.40080 6.47062 6.57878 6.64475 6.91340 7.06642 7.17368 7.36965 7.52735 7.65770 7.77174 7.88745 7.93376 8.19838 8.36204 8.70583 8.93260 9.43206 10.91064 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.006059 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.468403 B = 4620.086957 C = 6065.497127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.274 3.726 4 H 0.059 0.941 5 C -0.535 4.535 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.464 3.536 15 N -0.523 5.523 16 C 0.205 3.795 17 C -0.105 4.105 18 C -0.263 4.263 19 C 0.043 3.957 20 C -0.119 4.119 21 C -0.274 4.274 22 C 0.532 3.468 23 O -0.502 6.502 24 O -0.352 6.352 25 C 0.032 3.968 26 H 0.055 0.945 27 H 0.021 0.979 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.395 0.605 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 8.241 8.539 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.077 0.923 5 C -0.574 4.574 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.306 5.306 14 C 0.223 3.777 15 N -0.242 5.242 16 C 0.061 3.939 17 C -0.163 4.163 18 C -0.287 4.287 19 C 0.035 3.965 20 C -0.176 4.176 21 C -0.284 4.284 22 C 0.375 3.625 23 O -0.389 6.389 24 O -0.268 6.268 25 C -0.062 4.062 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.119 0.881 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.718 7.331 7.682 13.739 hybrid contribution 1.193 0.264 1.195 1.709 sum -7.525 7.596 8.877 13.897 Atomic orbital electron populations 1.21828 0.98349 0.97858 1.01003 1.21936 0.92773 0.99726 1.02211 1.18916 0.94174 0.89238 0.80379 0.92348 1.21263 0.90774 1.39019 1.06301 0.92271 1.24836 0.98580 0.94705 0.95317 1.69894 1.34989 1.37626 1.09341 0.86413 0.84907 0.77803 0.78118 1.19805 1.20833 1.20799 1.45537 1.10633 1.55599 1.18804 1.18198 0.87060 0.86110 0.86324 1.67460 1.04030 1.23935 1.28742 1.21139 0.90402 0.88215 0.94124 1.20753 0.96687 1.03865 0.94954 1.21158 1.01963 1.11213 0.94352 1.19775 0.90601 0.90865 0.95237 1.20868 1.01951 1.00312 0.94430 1.18978 0.96288 1.17879 0.95257 1.21054 0.78213 0.78875 0.84402 1.90836 1.68264 1.37552 1.42199 1.86751 1.46801 1.46079 1.47202 1.23281 0.92525 1.03621 0.86785 0.92595 0.96006 0.94715 0.88136 0.95289 0.92610 0.77038 0.90266 0.90178 0.90916 0.85280 0.90290 0.91762 0.90445 0.88156 0.92130 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.44 37.16 0.31 -2.58 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.06 1.63 7.53 -51.93 -0.39 1.24 16 5 C -0.54 -14.37 8.73 -34.44 -0.30 -14.67 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -15.35 5.07 -54.86 -0.28 -15.63 16 14 C 0.46 9.61 6.05 -155.20 -0.94 8.67 16 15 N -0.52 -10.38 6.28 -8.43 -0.05 -10.43 16 16 C 0.20 3.29 6.78 -82.53 -0.56 2.73 16 17 C -0.11 -1.29 10.16 36.00 0.37 -0.92 16 18 C -0.26 -3.75 9.41 -39.50 -0.37 -4.12 16 19 C 0.04 0.66 5.95 -103.92 -0.62 0.04 16 20 C -0.12 -1.39 9.69 36.01 0.35 -1.04 16 21 C -0.27 -5.07 5.78 -104.66 -0.61 -5.67 16 22 C 0.53 9.61 4.75 34.41 0.16 9.77 16 23 O -0.50 -9.88 16.90 -19.28 -0.33 -10.21 16 24 O -0.35 -5.68 10.58 -40.68 -0.43 -6.11 16 25 C 0.03 0.38 10.57 101.05 1.07 1.45 16 26 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.75 5.60 -51.93 -0.29 0.46 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 32 H 0.40 8.66 7.37 -40.82 -0.30 8.36 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.68 8.07 -51.92 -0.42 0.26 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.77 7.18 -51.93 -0.37 0.40 16 39 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -30.41 346.96 -8.03 -38.44 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.25 Total: 7.80 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.53 Total: -1.12 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.29 Total: -49.81 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.76 Total: -16.32 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.41 -8.03 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.739 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds