Wall clock time and date at job start Tue Mar 31 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47416 * 2 1 4 4 H 1.09001 * 109.46951 * 305.00303 * 3 2 1 5 5 C 1.50704 * 109.47226 * 185.00280 * 3 2 1 6 6 H 1.08000 * 119.99622 * 239.99713 * 5 3 2 7 7 C 1.37876 * 120.00001 * 60.00006 * 5 3 2 8 8 N 1.31508 * 120.00061 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99875 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47133 * 120.00082 * 9 7 5 12 12 H 1.48498 * 109.47122 * 239.99494 * 9 7 5 13 13 N 1.46499 * 109.47306 * 65.00280 * 3 2 1 14 14 C 1.38231 * 119.99490 * 275.00251 * 13 3 2 15 15 N 1.32423 * 119.83521 * 359.97438 * 14 13 3 16 16 C 1.31842 * 121.78474 * 180.02562 * 15 14 13 17 17 C 1.50692 * 119.38808 * 179.97438 * 16 15 14 18 18 C 1.38403 * 121.22728 * 0.02562 * 16 15 14 19 19 C 1.38303 * 119.51441 * 359.97438 * 18 16 15 20 20 C 1.50706 * 120.81372 * 180.02562 * 19 18 16 21 21 C 1.40041 * 118.36690 * 0.27794 * 19 18 16 22 22 C 1.47280 * 120.61529 * 179.72187 * 21 19 18 23 23 O 1.21522 * 120.00086 * 90.00515 * 22 21 19 24 24 O 1.34770 * 119.99934 * 269.99933 * 22 21 19 25 25 C 1.45204 * 116.99780 * 179.97438 * 24 22 21 26 26 H 1.09000 * 109.47353 * 59.99664 * 1 2 3 27 27 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46648 * 300.00183 * 1 2 3 29 29 H 1.09004 * 109.47131 * 239.99601 * 2 1 3 30 30 H 1.09000 * 109.47353 * 120.00335 * 2 1 3 31 31 H 0.97006 * 119.99975 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00386 * 94.99890 * 13 3 2 33 33 H 1.08995 * 109.47536 * 270.02139 * 17 16 15 34 34 H 1.09004 * 109.46976 * 30.02440 * 17 16 15 35 35 H 1.09009 * 109.47272 * 150.01859 * 17 16 15 36 36 H 1.07997 * 120.23767 * 179.97438 * 18 16 15 37 37 H 1.08999 * 109.47015 * 90.00537 * 20 19 18 38 38 H 1.09000 * 109.46646 * 209.99689 * 20 19 18 39 39 H 1.09000 * 109.47248 * 330.00407 * 20 19 18 40 40 H 1.09003 * 109.46599 * 180.02562 * 25 24 22 41 41 H 1.08998 * 109.47241 * 300.00252 * 25 24 22 42 42 H 1.09002 * 109.46682 * 60.00865 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8799 -1.3813 10 1 6.5989 1.5439 -0.1932 11 1 6.4961 -0.5192 -1.4629 12 1 6.4000 1.6154 -2.6093 13 7 1.6526 2.0975 1.2518 14 6 0.4041 2.6789 1.3699 15 7 -0.4389 2.6423 0.3492 16 6 -1.6385 3.1848 0.4196 17 6 -2.5541 3.1121 -0.7751 18 6 -2.0721 3.8206 1.5699 19 6 -1.2338 3.8893 2.6677 20 6 -1.6762 4.5740 3.9353 21 6 0.0382 3.3117 2.5707 22 6 0.9733 3.3615 3.7075 23 8 0.9726 2.4708 4.5343 24 8 1.8297 4.3947 3.8309 25 6 2.7220 4.3782 4.9763 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.8293 -0.0619 -2.9496 32 1 2.2720 2.1231 1.9977 33 1 -2.3930 3.9834 -1.4099 34 1 -2.3411 2.2055 -1.3415 35 1 -3.5906 3.0949 -0.4380 36 1 -3.0579 4.2599 1.6098 37 1 -2.1644 3.8502 4.5879 38 1 -0.8081 4.9938 4.4434 39 1 -2.3761 5.3732 3.6912 40 1 3.3561 5.2645 4.9555 41 1 2.1346 4.3735 5.8944 42 1 3.3449 3.4845 4.9387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:22 Heat of formation + Delta-G solvation = -72.221106 kcal Electronic energy + Delta-G solvation = -24356.988522 eV Core-core repulsion = 20915.274908 eV Total energy + Delta-G solvation = -3441.713614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -42.02292 -40.72463 -38.10374 -37.51986 -35.10067 -35.04247 -33.25101 -31.65525 -29.94437 -28.79772 -28.47809 -27.72470 -25.05245 -24.05091 -22.76171 -22.15636 -21.00196 -19.30467 -18.80884 -18.09403 -18.07113 -17.53401 -16.89085 -16.53287 -16.08270 -15.54040 -15.37520 -14.79631 -14.63903 -14.42806 -14.24700 -14.11155 -13.79549 -13.66029 -13.46106 -13.21302 -13.19304 -13.14884 -12.95773 -12.83213 -12.70600 -12.59862 -12.17265 -12.05498 -11.87440 -11.81272 -11.59401 -11.14520 -10.82449 -10.49844 -10.33586 -10.14752 -8.53825 -8.18938 -6.35329 0.07285 0.58651 0.90552 1.39171 1.40478 1.51829 1.74924 2.29847 2.50882 2.86400 3.09819 3.51651 3.72903 3.86014 4.07805 4.24003 4.24599 4.29559 4.51667 4.53694 4.58911 4.59226 4.64489 4.69316 4.72867 4.81678 4.90063 5.01958 5.05286 5.11429 5.13265 5.26940 5.29487 5.37695 5.46418 5.55232 5.62853 5.82376 5.86270 6.04545 6.31829 6.56092 6.65537 6.74815 7.31346 7.42309 8.85948 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.006059 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.468403 B = 4620.086957 C = 6065.497127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C 0.290 3.710 4 H 0.024 0.976 5 C -0.556 4.556 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.907 5.907 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.277 1.277 13 N -0.700 5.700 14 C 0.439 3.561 15 N -0.555 5.555 16 C 0.186 3.814 17 C -0.102 4.102 18 C -0.242 4.242 19 C 0.038 3.962 20 C -0.116 4.116 21 C -0.292 4.292 22 C 0.537 3.463 23 O -0.527 6.527 24 O -0.360 6.360 25 C 0.023 3.977 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.392 0.608 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 9.805 9.464 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.160 4.160 3 C 0.187 3.813 4 H 0.042 0.958 5 C -0.594 4.594 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.325 5.325 14 C 0.200 3.800 15 N -0.275 5.275 16 C 0.045 3.955 17 C -0.159 4.159 18 C -0.265 4.265 19 C 0.030 3.970 20 C -0.172 4.172 21 C -0.302 4.302 22 C 0.381 3.619 23 O -0.416 6.416 24 O -0.276 6.276 25 C -0.070 4.070 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.226 0.774 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.193 0.807 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.092 0.908 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.294 8.937 8.615 16.126 hybrid contribution 1.546 -0.108 0.948 1.816 sum -8.748 8.829 9.563 15.682 Atomic orbital electron populations 1.21620 0.96204 0.98671 1.00653 1.21786 0.94630 0.99226 1.00327 1.18423 0.93074 0.89043 0.80721 0.95845 1.21564 0.91966 1.39305 1.06540 0.92702 1.25628 1.02984 0.94212 0.94901 1.70011 1.36726 1.38009 1.09725 0.85411 0.79534 0.77942 0.78137 1.19401 1.20248 1.20247 1.45175 1.11952 1.57663 1.17690 1.18388 0.86706 0.87203 0.87670 1.67436 1.05552 1.25396 1.29117 1.21901 0.89627 0.87743 0.96261 1.20867 0.97752 1.03616 0.93630 1.21666 1.03239 1.08819 0.92726 1.20335 0.89356 0.90102 0.97205 1.20959 1.02509 1.01141 0.92572 1.19240 0.97972 1.18343 0.94622 1.21033 0.78169 0.78778 0.83931 1.90809 1.69154 1.38452 1.43218 1.86725 1.46824 1.45214 1.48809 1.23645 0.92369 1.04930 0.86032 0.93075 0.94426 0.94818 0.90580 0.96273 0.92408 0.77386 0.89023 0.91745 0.87208 0.80716 0.89271 0.92314 0.87029 0.84821 0.90773 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.10 8.44 71.98 0.61 -4.49 16 2 C -0.12 -6.18 5.45 30.59 0.17 -6.01 16 3 C 0.29 15.37 2.24 44.25 0.10 15.47 16 4 H 0.02 1.40 7.53 -2.39 -0.02 1.38 16 5 C -0.56 -31.01 8.73 25.60 0.22 -30.78 16 6 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 13 N -0.70 -32.97 5.07 -327.48 -1.66 -34.63 16 14 C 0.44 18.63 6.05 133.67 0.81 19.44 16 15 N -0.56 -22.35 6.28 -180.57 -1.13 -23.49 16 16 C 0.19 5.69 6.78 42.59 0.29 5.98 16 17 C -0.10 -2.25 10.16 71.23 0.72 -1.53 16 18 C -0.24 -6.08 9.41 22.32 0.21 -5.87 16 19 C 0.04 1.07 5.95 -19.41 -0.12 0.96 16 20 C -0.12 -2.31 9.69 71.24 0.69 -1.62 16 21 C -0.29 -10.76 5.78 -19.89 -0.12 -10.88 16 22 C 0.54 19.48 4.75 70.20 0.33 19.81 16 23 O -0.53 -21.00 16.90 19.76 0.33 -20.67 16 24 O -0.36 -11.50 10.58 -56.80 -0.60 -12.10 16 25 C 0.02 0.53 10.57 113.37 1.20 1.73 16 26 H 0.05 2.29 7.67 -2.39 -0.02 2.28 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.03 1.49 5.60 -2.39 -0.01 1.48 16 29 H 0.08 4.26 5.95 -2.38 -0.01 4.25 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 32 H 0.39 18.19 7.37 -92.71 -0.68 17.51 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 36 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.26 7.18 -2.39 -0.02 1.24 16 39 H 0.11 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.25 346.96 5.12 -64.13 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.35 Total: 28.86 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.57 Total: 3.96 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -2.55 Total: -109.54 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.27 Total: -32.77 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -69.25 5.12 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.095 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds