Wall clock time and date at job start Tue Mar 31 2020 06:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47160 * 2 1 4 4 C 1.34766 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00286 * 359.97438 * 4 3 2 6 6 C 1.47287 * 119.99676 * 180.02562 * 4 3 2 7 7 C 1.40046 * 120.61151 * 269.99589 * 6 4 3 8 8 C 1.50703 * 120.81943 * 0.02562 * 7 6 4 9 9 C 1.38307 * 118.36157 * 179.73075 * 7 6 4 10 10 C 1.38396 * 119.51696 * 0.27279 * 9 7 6 11 11 N 1.31838 * 121.23032 * 0.02562 * 10 9 7 12 12 C 1.32437 * 121.78249 * 359.97438 * 11 10 9 13 13 N 1.38229 * 119.83215 * 179.97438 * 12 11 10 14 14 C 1.46506 * 119.99708 * 0.02562 * 13 12 11 15 15 H 1.08995 * 109.47155 * 35.00281 * 14 13 12 16 16 C 1.50704 * 109.46640 * 155.00031 * 14 13 12 17 17 H 1.07998 * 119.99892 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99938 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99680 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00206 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46816 * 120.00020 * 20 18 16 23 23 H 1.48493 * 109.47189 * 239.99907 * 20 18 16 24 24 C 1.53005 * 109.47105 * 274.99876 * 14 13 12 25 25 C 1.52998 * 109.46942 * 65.00183 * 24 14 13 26 26 H 1.09000 * 109.47290 * 60.00233 * 1 2 3 27 27 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47262 * 299.99722 * 1 2 3 29 29 H 1.09004 * 109.47262 * 240.00278 * 2 1 3 30 30 H 1.09000 * 109.47290 * 119.99767 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.71931 * 8 7 6 32 32 H 1.09001 * 109.46980 * 149.72031 * 8 7 6 33 33 H 1.09004 * 109.47113 * 29.72012 * 8 7 6 34 34 H 1.08001 * 120.24189 * 180.30110 * 9 7 6 35 35 H 1.07998 * 119.38592 * 179.97438 * 10 9 7 36 36 H 0.96993 * 119.99768 * 180.02562 * 13 12 11 37 37 H 0.97005 * 120.00163 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.46754 * 185.00373 * 24 14 13 39 39 H 1.08996 * 109.46830 * 305.00294 * 24 14 13 40 40 H 1.09003 * 109.46901 * 60.00219 * 25 24 14 41 41 H 1.08999 * 109.47180 * 179.97438 * 25 24 14 42 42 H 1.08999 * 109.47365 * 300.00193 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0903 0.5819 0.0015 6 6 3.9129 2.9066 0.0011 7 6 4.1859 3.5659 -1.2039 8 6 3.9106 2.9005 -2.5277 9 6 4.7088 4.8452 -1.1490 10 6 4.9508 5.4307 0.0814 11 7 4.6927 4.7915 1.2052 12 6 4.1917 3.5655 1.2112 13 7 3.9370 2.9326 2.4133 14 6 4.2206 3.6182 3.6766 15 1 4.0183 4.6835 3.5652 16 6 3.3438 3.0514 4.7635 17 1 2.6457 2.2595 4.5361 18 6 3.4338 3.5432 6.0484 19 7 4.2844 4.5073 6.3254 20 14 2.3467 2.8413 7.3955 21 1 1.4831 1.7743 6.8289 22 1 3.1973 2.2702 8.4706 23 1 1.4962 3.9207 7.9580 24 6 5.6906 3.4143 4.0488 25 6 6.5796 4.0985 3.0085 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.7954 2.3510 -2.8492 32 1 3.6636 3.6586 -3.2710 33 1 3.0735 2.2106 -2.4204 34 1 4.9262 5.3834 -2.0597 35 1 5.3595 6.4295 0.1218 36 1 3.5705 2.0346 2.4205 37 1 4.3481 4.8531 7.2295 38 1 5.8803 3.8480 5.0307 39 1 5.9145 2.3479 4.0732 40 1 6.3556 5.1650 2.9841 41 1 7.6269 3.9536 3.2738 42 1 6.3899 3.6648 2.0267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:16 Heat of formation + Delta-G solvation = -55.644163 kcal Electronic energy + Delta-G solvation = -24196.957144 eV Core-core repulsion = 20755.962361 eV Total energy + Delta-G solvation = -3440.994784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.66503 -39.33466 -36.38175 -36.31991 -33.62215 -32.96745 -31.68576 -31.21046 -29.32341 -27.81341 -26.62823 -24.60337 -23.08503 -22.85768 -21.30263 -20.95209 -19.50050 -17.84733 -17.56775 -16.64698 -16.53522 -16.02288 -15.67132 -14.80207 -14.46604 -14.44170 -13.82463 -13.71428 -13.52091 -13.28333 -12.90462 -12.79143 -12.63873 -12.43291 -12.14606 -11.90959 -11.78250 -11.60335 -11.54882 -11.26500 -10.93915 -10.91259 -10.50271 -10.47269 -10.36693 -10.20524 -9.70134 -9.51410 -9.17764 -8.97603 -8.83343 -8.44083 -7.01963 -6.14429 -4.23155 1.36317 1.86787 2.27949 2.87892 3.22601 3.30546 3.33605 3.95379 4.23685 4.35198 4.74795 4.89453 4.90101 4.96227 5.01660 5.17373 5.22835 5.32719 5.44379 5.53500 5.60556 5.71503 5.73404 5.77580 5.92922 6.04057 6.14819 6.39646 6.43180 6.46548 6.57856 6.64052 6.89032 7.05858 7.16130 7.36361 7.52152 7.65358 7.75780 7.89393 7.92351 8.19171 8.34627 8.69408 8.91993 9.42888 10.90849 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.005983 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.559285 B = 4679.022509 C = 6247.817480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.350 6.350 4 C 0.533 3.467 5 O -0.502 6.502 6 C -0.267 4.267 7 C 0.040 3.960 8 C -0.120 4.120 9 C -0.266 4.266 10 C 0.178 3.822 11 N -0.523 5.523 12 C 0.459 3.541 13 N -0.683 5.683 14 C 0.274 3.726 15 H 0.059 0.941 16 C -0.535 4.535 17 H 0.059 0.941 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.128 4.128 25 C -0.134 4.134 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.395 0.605 37 H 0.264 0.736 38 H 0.101 0.899 39 H 0.028 0.972 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -2.767 -15.007 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.267 6.267 4 C 0.375 3.625 5 O -0.389 6.389 6 C -0.278 4.278 7 C 0.033 3.967 8 C -0.176 4.176 9 C -0.290 4.290 10 C 0.015 3.985 11 N -0.241 5.241 12 C 0.218 3.782 13 N -0.305 5.305 14 C 0.173 3.827 15 H 0.077 0.923 16 C -0.574 4.574 17 H 0.077 0.923 18 C -0.134 4.134 19 N -0.518 5.518 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.167 4.167 25 C -0.191 4.191 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.230 0.770 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.505 -2.540 -13.748 14.203 hybrid contribution -0.764 -1.305 0.000 1.512 sum -3.268 -3.845 -13.748 14.644 Atomic orbital electron populations 1.21797 0.92653 1.02758 1.03689 1.23041 0.95465 0.80621 1.02511 1.86746 1.24325 1.31848 1.83804 1.21006 0.80343 0.89706 0.71429 1.90835 1.60529 1.42613 1.44952 1.19025 1.18732 0.95382 0.94623 1.19806 0.91144 0.92900 0.92891 1.20876 1.02250 1.00747 0.93762 1.21373 1.11878 0.96391 0.99335 1.22630 0.90699 0.98156 0.86973 1.67667 1.18616 1.07609 1.30222 1.18281 0.86799 0.87959 0.85124 1.45551 1.63303 1.17534 1.04122 1.18927 0.92192 0.94172 0.77451 0.92335 1.21258 1.21519 1.21055 0.93530 0.92271 1.24839 0.95466 0.94781 0.98361 1.69896 1.35154 1.26183 1.20606 0.86411 0.80293 0.78962 0.81566 1.19804 1.20827 1.20792 1.21941 0.95959 0.97938 1.00839 1.21833 0.97173 1.01299 0.98789 0.91613 0.90386 0.91170 0.91456 0.91072 0.90291 0.90435 0.91776 0.85243 0.82824 0.77048 0.92599 0.88115 0.95271 0.92555 0.95972 0.94719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.73 6.20 37.16 0.23 0.96 16 3 O -0.35 -5.67 10.23 -40.67 -0.42 -6.09 16 4 C 0.53 9.57 4.75 34.41 0.16 9.73 16 5 O -0.50 -9.88 16.90 -19.28 -0.33 -10.20 16 6 C -0.27 -4.88 5.78 -104.66 -0.61 -5.48 16 7 C 0.04 0.61 5.95 -103.92 -0.62 -0.01 16 8 C -0.12 -1.38 9.69 36.01 0.35 -1.03 16 9 C -0.27 -3.62 9.79 -39.50 -0.39 -4.00 16 10 C 0.18 2.73 11.16 -17.49 -0.20 2.54 16 11 N -0.52 -10.23 6.38 -12.19 -0.08 -10.31 16 12 C 0.46 9.39 6.05 -155.19 -0.94 8.45 16 13 N -0.68 -15.26 5.07 -54.85 -0.28 -15.54 16 14 C 0.27 6.89 2.24 -69.07 -0.15 6.73 16 15 H 0.06 1.63 7.53 -51.93 -0.39 1.24 16 16 C -0.54 -14.35 8.73 -34.44 -0.30 -14.65 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 19 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 25 C -0.13 -2.90 8.44 37.16 0.31 -2.59 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.27 16 33 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.39 8.63 7.37 -40.82 -0.30 8.33 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.10 2.69 5.95 -51.93 -0.31 2.39 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.75 5.59 -51.93 -0.29 0.46 16 LS Contribution 347.23 15.07 5.23 5.23 Total: -1.00 -30.15 347.23 -8.51 -38.67 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.25 Total: 8.21 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.00 Total: -1.98 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.27 Total: -49.59 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.74 Total: -16.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.15 -8.51 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.979 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds