Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45198 * 109.47160 * 2 1 4 4 C 1.34766 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00286 * 359.97438 * 4 3 2 6 6 C 1.47287 * 119.99676 * 180.02562 * 4 3 2 7 7 C 1.40046 * 120.61151 * 269.99589 * 6 4 3 8 8 C 1.50703 * 120.81943 * 0.02562 * 7 6 4 9 9 C 1.38307 * 118.36157 * 179.73075 * 7 6 4 10 10 C 1.38396 * 119.51696 * 0.27279 * 9 7 6 11 11 N 1.31838 * 121.23032 * 0.02562 * 10 9 7 12 12 C 1.32437 * 121.78249 * 359.97438 * 11 10 9 13 13 N 1.38229 * 119.83215 * 179.97438 * 12 11 10 14 14 C 1.46506 * 119.99708 * 0.02562 * 13 12 11 15 15 H 1.08995 * 109.47155 * 35.00281 * 14 13 12 16 16 C 1.50704 * 109.46640 * 155.00031 * 14 13 12 17 17 H 1.07998 * 119.99892 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99938 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99680 * 0.02562 * 18 16 14 20 20 Si 1.86793 * 120.00206 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47113 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46816 * 120.00020 * 20 18 16 23 23 H 1.48493 * 109.47189 * 239.99907 * 20 18 16 24 24 C 1.53005 * 109.47105 * 274.99876 * 14 13 12 25 25 C 1.52998 * 109.46942 * 65.00183 * 24 14 13 26 26 H 1.09000 * 109.47290 * 60.00233 * 1 2 3 27 27 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47262 * 299.99722 * 1 2 3 29 29 H 1.09004 * 109.47262 * 240.00278 * 2 1 3 30 30 H 1.09000 * 109.47290 * 119.99767 * 2 1 3 31 31 H 1.09002 * 109.47152 * 269.71931 * 8 7 6 32 32 H 1.09001 * 109.46980 * 149.72031 * 8 7 6 33 33 H 1.09004 * 109.47113 * 29.72012 * 8 7 6 34 34 H 1.08001 * 120.24189 * 180.30110 * 9 7 6 35 35 H 1.07998 * 119.38592 * 179.97438 * 10 9 7 36 36 H 0.96993 * 119.99768 * 180.02562 * 13 12 11 37 37 H 0.97005 * 120.00163 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.46754 * 185.00373 * 24 14 13 39 39 H 1.08996 * 109.46830 * 305.00294 * 24 14 13 40 40 H 1.09003 * 109.46901 * 60.00219 * 25 24 14 41 41 H 1.08999 * 109.47180 * 179.97438 * 25 24 14 42 42 H 1.08999 * 109.47365 * 300.00193 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5455 0.0005 5 8 4.0903 0.5819 0.0015 6 6 3.9129 2.9066 0.0011 7 6 4.1859 3.5659 -1.2039 8 6 3.9106 2.9005 -2.5277 9 6 4.7088 4.8452 -1.1490 10 6 4.9508 5.4307 0.0814 11 7 4.6927 4.7915 1.2052 12 6 4.1917 3.5655 1.2112 13 7 3.9370 2.9326 2.4133 14 6 4.2206 3.6182 3.6766 15 1 4.0183 4.6835 3.5652 16 6 3.3438 3.0514 4.7635 17 1 2.6457 2.2595 4.5361 18 6 3.4338 3.5432 6.0484 19 7 4.2844 4.5073 6.3254 20 14 2.3467 2.8413 7.3955 21 1 1.4831 1.7743 6.8289 22 1 3.1973 2.2702 8.4706 23 1 1.4962 3.9207 7.9580 24 6 5.6906 3.4143 4.0488 25 6 6.5796 4.0985 3.0085 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.7954 2.3510 -2.8492 32 1 3.6636 3.6586 -3.2710 33 1 3.0735 2.2106 -2.4204 34 1 4.9262 5.3834 -2.0597 35 1 5.3595 6.4295 0.1218 36 1 3.5705 2.0346 2.4205 37 1 4.3481 4.8531 7.2295 38 1 5.8803 3.8480 5.0307 39 1 5.9145 2.3479 4.0732 40 1 6.3556 5.1650 2.9841 41 1 7.6269 3.9536 3.2738 42 1 6.3899 3.6648 2.0267 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -72.065967 kcal Electronic energy + Delta-G solvation = -24197.669247 eV Core-core repulsion = 20755.962361 eV Total energy + Delta-G solvation = -3441.706886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00519 -40.67140 -38.01743 -37.67225 -35.08621 -34.54764 -33.16415 -32.56819 -30.84673 -28.90450 -28.48386 -25.85614 -24.98011 -23.89857 -22.78947 -22.27518 -21.20848 -19.41273 -18.96971 -18.02785 -17.89996 -17.66242 -17.08889 -16.57058 -15.98081 -15.68463 -15.37160 -14.99533 -14.79922 -14.54999 -14.45593 -13.83422 -13.72298 -13.67701 -13.54685 -13.38368 -13.17357 -12.99033 -12.93690 -12.73434 -12.73050 -12.54461 -12.20699 -12.08952 -11.79118 -11.59363 -11.58935 -11.21079 -10.87755 -10.53288 -10.40572 -10.16986 -8.54809 -8.18828 -6.35175 0.09804 0.59150 0.90416 1.39215 1.40504 1.51830 1.67432 2.30522 2.52531 2.93480 3.09980 3.56805 3.76241 3.88462 3.95258 4.03102 4.11401 4.27163 4.29168 4.53396 4.57570 4.60043 4.65637 4.72487 4.78782 4.81813 4.87888 4.91947 5.04542 5.10507 5.11739 5.27687 5.30698 5.40621 5.46968 5.55086 5.60684 5.82235 5.85307 6.04459 6.31447 6.56430 6.65118 6.74686 7.31140 7.41563 8.86026 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.005983 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.559285 B = 4679.022509 C = 6247.817480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 O -0.357 6.357 4 C 0.537 3.463 5 O -0.528 6.528 6 C -0.285 4.285 7 C 0.034 3.966 8 C -0.117 4.117 9 C -0.240 4.240 10 C 0.166 3.834 11 N -0.557 5.557 12 C 0.434 3.566 13 N -0.701 5.701 14 C 0.290 3.710 15 H 0.025 0.975 16 C -0.555 4.555 17 H 0.054 0.946 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.964 3.036 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.277 1.277 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.177 0.823 35 H 0.188 0.812 36 H 0.391 0.609 37 H 0.267 0.733 38 H 0.076 0.924 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -2.557 -17.254 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 O -0.274 6.274 4 C 0.381 3.619 5 O -0.417 6.417 6 C -0.294 4.294 7 C 0.026 3.974 8 C -0.173 4.173 9 C -0.262 4.262 10 C 0.005 3.995 11 N -0.275 5.275 12 C 0.196 3.804 13 N -0.325 5.325 14 C 0.187 3.813 15 H 0.042 0.958 16 C -0.594 4.594 17 H 0.072 0.928 18 C -0.177 4.177 19 N -0.545 5.545 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.160 4.160 25 C -0.173 4.173 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.075 0.925 34 H 0.194 0.806 35 H 0.205 0.795 36 H 0.225 0.775 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.979 -2.301 -16.058 16.493 hybrid contribution -0.625 -1.312 0.522 1.544 sum -3.604 -3.613 -15.536 16.352 Atomic orbital electron populations 1.21827 0.90205 1.04572 1.03578 1.23400 0.97375 0.79058 1.02751 1.86735 1.23358 1.33997 1.83276 1.21029 0.80734 0.89471 0.70659 1.90807 1.61169 1.43337 1.46433 1.19276 1.19344 0.95680 0.95139 1.20366 0.90234 0.93488 0.93271 1.20965 1.02407 1.01497 0.92421 1.21888 1.08457 0.95522 1.00366 1.23320 0.90128 0.99340 0.86690 1.67621 1.19533 1.07634 1.32727 1.18441 0.88217 0.88763 0.84980 1.45184 1.65722 1.17521 1.04067 1.18436 0.92048 0.92293 0.78553 0.95756 1.21559 1.21985 1.21173 0.94639 0.92763 1.25626 0.96664 0.95029 1.00406 1.70013 1.36227 1.27065 1.21157 0.85417 0.78613 0.78347 0.78689 1.19417 1.20241 1.20232 1.21794 0.96649 0.97203 1.00400 1.21634 0.97312 1.00514 0.97820 0.90650 0.87578 0.92286 0.90116 0.92002 0.89318 0.87006 0.92484 0.80568 0.79538 0.77470 0.92405 0.90590 0.96282 0.92976 0.94406 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.29 71.98 0.74 -1.90 16 2 C 0.05 1.19 6.20 71.98 0.45 1.63 16 3 O -0.36 -11.61 10.23 -56.77 -0.58 -12.20 16 4 C 0.54 19.50 4.75 70.20 0.33 19.83 16 5 O -0.53 -21.10 16.90 19.79 0.33 -20.77 16 6 C -0.28 -10.32 5.78 -19.89 -0.12 -10.43 16 7 C 0.03 0.95 5.95 -19.41 -0.12 0.83 16 8 C -0.12 -2.30 9.69 71.24 0.69 -1.61 16 9 C -0.24 -5.62 9.79 22.32 0.22 -5.40 16 10 C 0.17 4.72 11.16 84.73 0.95 5.67 16 11 N -0.56 -21.82 6.38 -192.49 -1.23 -23.04 16 12 C 0.43 18.12 6.05 133.67 0.81 18.93 16 13 N -0.70 -32.78 5.07 -327.46 -1.66 -34.44 16 14 C 0.29 15.27 2.24 44.25 0.10 15.37 16 15 H 0.02 1.44 7.53 -2.39 -0.02 1.42 16 16 C -0.56 -30.95 8.73 25.60 0.22 -30.73 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 18 C 0.02 1.29 5.29 84.65 0.45 1.74 16 19 N -0.91 -51.61 11.29 21.45 0.24 -51.37 16 20 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 24 C -0.12 -6.19 5.45 30.60 0.17 -6.02 16 25 C -0.12 -5.10 8.44 71.98 0.61 -4.50 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.06 1.22 7.18 -2.38 -0.02 1.20 16 34 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.19 3.88 8.06 -2.91 -0.02 3.85 16 36 H 0.39 18.16 7.37 -92.71 -0.68 17.47 16 37 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.08 4.24 5.95 -2.39 -0.01 4.23 16 39 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 41 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.03 1.53 5.59 -2.39 -0.01 1.52 16 Total: -1.00 -68.50 347.23 4.98 -63.52 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.34 Total: 29.54 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 5.50 Total: 3.42 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -2.64 Total: -108.85 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.25 Total: -32.97 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.50 4.98 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.546 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds