Wall clock time and date at job start Tue Mar 31 2020 06:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.47061 * 2 1 4 4 C 1.34666 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21434 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.48068 * 119.99980 * 180.02562 * 4 3 2 7 7 C 1.39585 * 120.88647 * 5.56176 * 6 4 3 8 8 C 1.39084 * 118.92315 * 180.24615 * 7 6 4 9 9 N 1.39030 * 119.63938 * 179.77603 * 8 7 6 10 10 C 1.46498 * 119.99891 * 359.72211 * 9 8 7 11 11 H 1.09006 * 109.47158 * 35.00191 * 10 9 8 12 12 C 1.50701 * 109.46797 * 154.99922 * 10 9 8 13 13 H 1.08002 * 119.99932 * 95.11083 * 12 10 9 14 14 C 1.37873 * 120.00406 * 275.10167 * 12 10 9 15 15 N 1.31524 * 119.99738 * 355.83308 * 14 12 10 16 16 Si 1.86798 * 120.00368 * 175.54855 * 14 12 10 17 17 H 1.48505 * 109.47050 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47036 * 120.00196 * 16 14 12 19 19 H 1.48495 * 109.47345 * 240.00418 * 16 14 12 20 20 C 1.52997 * 109.47332 * 274.99966 * 10 9 8 21 21 C 1.53004 * 109.47173 * 65.23802 * 20 10 9 22 22 N 1.32346 * 120.71453 * 359.49599 * 8 7 6 23 23 C 1.31887 * 121.96015 * 0.25615 * 22 8 7 24 24 C 1.37990 * 121.00399 * 0.02562 * 23 22 8 25 25 C 1.50703 * 120.41596 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.47104 * 59.99492 * 1 2 3 27 27 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 299.99679 * 1 2 3 29 29 H 1.09006 * 109.46974 * 240.00052 * 2 1 3 30 30 H 1.08994 * 109.47242 * 120.00518 * 2 1 3 31 31 H 1.07997 * 120.53562 * 359.97438 * 7 6 4 32 32 H 0.96996 * 120.00087 * 179.72443 * 9 8 7 33 33 H 0.96996 * 119.99841 * 5.06349 * 15 14 12 34 34 H 1.09004 * 109.47036 * 185.23486 * 20 10 9 35 35 H 1.08995 * 109.47485 * 305.23745 * 20 10 9 36 36 H 1.08995 * 109.46961 * 59.99623 * 21 20 10 37 37 H 1.08996 * 109.47358 * 180.02562 * 21 20 10 38 38 H 1.09004 * 109.46915 * 300.00336 * 21 20 10 39 39 H 1.07994 * 119.49495 * 180.02562 * 23 22 8 40 40 H 1.08995 * 109.46698 * 95.93256 * 25 24 23 41 41 H 1.08997 * 109.46871 * 215.93040 * 25 24 23 42 42 H 1.08998 * 109.46819 * 335.93177 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9136 0.0011 7 6 3.0871 4.0314 0.1173 8 6 3.6617 5.2980 0.1080 9 7 2.8507 6.4218 0.2181 10 6 1.3986 6.2683 0.3367 11 1 1.1740 5.3724 0.9156 12 6 0.8213 7.4739 1.0328 13 1 0.4264 8.2948 0.4526 14 6 0.7973 7.5289 2.4102 15 7 1.2022 6.4961 3.1167 16 14 0.1971 9.0732 3.2730 17 1 -0.1941 10.0860 2.2598 18 1 -0.9768 8.7423 4.1203 19 1 1.2843 9.6187 4.1247 20 6 0.7834 6.1417 -1.0584 21 6 1.2696 4.8480 -1.7147 22 7 4.9727 5.4447 0.0012 23 6 5.7845 4.4108 -0.1052 24 6 5.2953 3.1205 -0.1100 25 6 6.2350 1.9487 -0.2328 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0173 3.9148 0.2084 32 1 3.2462 7.3074 0.2162 33 1 1.5861 5.7245 2.6716 34 1 -0.3033 6.1210 -0.9757 35 1 1.0853 6.9938 -1.6674 36 1 0.9677 3.9959 -1.1057 37 1 0.8317 4.7580 -2.7088 38 1 2.3563 4.8686 -1.7973 39 1 6.8483 4.5765 -0.1898 40 1 6.4661 1.5628 0.7600 41 1 5.7635 1.1656 -0.8264 42 1 7.1550 2.2704 -0.7208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161052491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:20 Heat of formation + Delta-G solvation = -57.713025 kcal Electronic energy + Delta-G solvation = -24183.639382 eV Core-core repulsion = 20742.554885 eV Total energy + Delta-G solvation = -3441.084496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.67243 -39.46815 -36.91800 -36.28442 -33.34608 -32.65955 -31.92242 -31.17142 -30.55107 -27.26191 -25.28728 -24.94454 -23.22142 -23.13206 -21.96014 -20.74299 -19.85497 -18.20551 -17.25834 -16.89584 -16.52504 -15.98952 -15.27304 -14.73827 -14.60990 -14.21402 -13.89010 -13.74082 -13.69433 -13.26765 -13.21117 -12.95296 -12.79274 -12.50297 -12.36125 -12.11269 -11.86869 -11.67275 -11.44175 -11.12162 -10.92724 -10.89257 -10.55124 -10.52603 -10.31278 -10.25907 -10.07608 -9.43720 -9.22095 -8.93797 -8.88728 -8.57148 -6.74548 -6.64370 -4.46948 1.00865 1.81498 2.68950 2.86073 3.31842 3.34120 3.48643 4.03697 4.33017 4.36012 4.70795 4.86594 4.92322 5.03837 5.18222 5.21778 5.30398 5.40278 5.56081 5.66339 5.71201 5.73275 5.80366 5.89736 5.96933 5.99972 6.00928 6.14643 6.19694 6.25574 6.43503 6.49937 6.54230 6.66643 6.74823 6.78818 7.04122 7.09640 7.68213 7.84999 7.94643 8.15991 8.50175 8.64859 8.87825 9.33180 10.72062 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.005304 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.612556 B = 5277.579469 C = 6202.186399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.348 6.348 4 C 0.515 3.485 5 O -0.503 6.503 6 C -0.051 4.051 7 C -0.181 4.181 8 C 0.399 3.601 9 N -0.688 5.688 10 C 0.243 3.757 11 H 0.048 0.952 12 C -0.605 4.605 13 H 0.059 0.941 14 C 0.033 3.967 15 N -0.885 5.885 16 Si 1.075 2.925 17 H -0.286 1.286 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.122 4.122 21 C -0.158 4.158 22 N -0.539 5.539 23 C 0.144 3.856 24 C -0.174 4.174 25 C -0.098 4.098 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.394 0.606 33 H 0.275 0.725 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.052 0.948 39 H 0.153 0.847 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -9.485 -6.916 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.265 6.265 4 C 0.361 3.639 5 O -0.392 6.392 6 C -0.059 4.059 7 C -0.207 4.207 8 C 0.160 3.840 9 N -0.315 5.315 10 C 0.142 3.858 11 H 0.066 0.934 12 C -0.644 4.644 13 H 0.078 0.922 14 C -0.176 4.176 15 N -0.519 5.519 16 Si 0.903 3.097 17 H -0.212 1.212 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.161 4.161 21 C -0.215 4.215 22 N -0.258 5.258 23 C -0.015 4.015 24 C -0.180 4.180 25 C -0.155 4.155 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.169 0.831 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.170 0.830 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.988 -8.337 -5.405 10.133 hybrid contribution 0.233 -1.283 -1.452 1.952 sum 2.222 -9.620 -6.857 12.021 Atomic orbital electron populations 1.21816 0.92528 1.02790 1.03971 1.23020 0.95489 0.80129 1.02408 1.86606 1.23820 1.32175 1.83904 1.21272 0.80448 0.89791 0.72421 1.90744 1.59909 1.42650 1.45924 1.18922 0.93277 0.89452 1.04291 1.22065 1.01842 0.90886 1.05925 1.18835 0.87468 0.88387 0.89321 1.46955 1.07051 1.04427 1.73084 1.19058 0.75808 0.98923 0.91969 0.93384 1.22111 1.43412 1.05069 0.93780 0.92223 1.26044 0.94378 1.02277 0.94936 1.70736 1.35794 1.05531 1.39790 0.83453 0.76706 0.74148 0.75428 1.21200 1.21044 1.21130 1.21917 1.00262 0.96039 0.97915 1.22225 1.01012 0.98799 0.99442 1.67170 1.03513 1.35201 1.19908 1.22148 0.98748 0.86459 0.94160 1.20403 0.92471 0.96896 1.08242 1.20713 0.96870 0.95681 1.02256 0.91357 0.90333 0.91141 0.91328 0.91227 0.83122 0.77003 0.91330 0.91857 0.93046 0.92614 0.94255 0.92907 0.82998 0.91872 0.90151 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.76 6.19 37.16 0.23 0.99 16 3 O -0.35 -5.47 9.59 -40.40 -0.39 -5.86 16 4 C 0.52 8.78 7.87 34.76 0.27 9.06 16 5 O -0.50 -8.71 13.29 -19.22 -0.26 -8.96 16 6 C -0.05 -0.92 5.90 -104.70 -0.62 -1.54 16 7 C -0.18 -3.51 6.30 -38.77 -0.24 -3.76 16 8 C 0.40 8.23 6.49 -155.06 -1.01 7.22 16 9 N -0.69 -14.91 5.18 -55.08 -0.29 -15.20 16 10 C 0.24 5.48 1.91 -69.08 -0.13 5.35 16 11 H 0.05 1.18 4.98 -51.93 -0.26 0.92 16 12 C -0.61 -15.24 8.50 -34.44 -0.29 -15.53 16 13 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 14 C 0.03 0.86 5.46 -17.82 -0.10 0.77 16 15 N -0.89 -24.91 13.62 55.43 0.76 -24.15 16 16 Si 1.08 23.43 29.91 -169.99 -5.08 18.34 16 17 H -0.29 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 20 C -0.12 -2.40 5.59 -26.73 -0.15 -2.55 16 21 C -0.16 -2.75 8.22 37.16 0.31 -2.44 16 22 N -0.54 -10.57 10.36 -12.48 -0.13 -10.70 16 23 C 0.14 2.40 10.82 -17.62 -0.19 2.21 16 24 C -0.17 -2.89 5.93 -104.04 -0.62 -3.51 16 25 C -0.10 -1.37 8.86 36.01 0.32 -1.05 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.15 2.99 3.67 -52.49 -0.19 2.80 16 32 H 0.39 8.65 8.72 -40.82 -0.36 8.30 16 33 H 0.28 7.80 6.67 -40.82 -0.27 7.53 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.96 6.36 -51.93 -0.33 0.63 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.97 5.39 -51.93 -0.28 0.69 16 39 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.20 5.89 -51.93 -0.31 0.89 16 42 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -28.35 340.46 -7.94 -36.29 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.85 Total: 10.98 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -1.84 Total: -5.87 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.34 Total: -50.05 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.64 Total: -14.82 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.08 Total: 18.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.35 -7.94 -36.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.427 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds