Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.47061 * 2 1 4 4 C 1.34666 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.21434 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.48068 * 119.99980 * 180.02562 * 4 3 2 7 7 C 1.39585 * 120.88647 * 5.56176 * 6 4 3 8 8 C 1.39084 * 118.92315 * 180.24615 * 7 6 4 9 9 N 1.39030 * 119.63938 * 179.77603 * 8 7 6 10 10 C 1.46498 * 119.99891 * 359.72211 * 9 8 7 11 11 H 1.09006 * 109.47158 * 35.00191 * 10 9 8 12 12 C 1.50701 * 109.46797 * 154.99922 * 10 9 8 13 13 H 1.08002 * 119.99932 * 95.11083 * 12 10 9 14 14 C 1.37873 * 120.00406 * 275.10167 * 12 10 9 15 15 N 1.31524 * 119.99738 * 355.83308 * 14 12 10 16 16 Si 1.86798 * 120.00368 * 175.54855 * 14 12 10 17 17 H 1.48505 * 109.47050 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47036 * 120.00196 * 16 14 12 19 19 H 1.48495 * 109.47345 * 240.00418 * 16 14 12 20 20 C 1.52997 * 109.47332 * 274.99966 * 10 9 8 21 21 C 1.53004 * 109.47173 * 65.23802 * 20 10 9 22 22 N 1.32346 * 120.71453 * 359.49599 * 8 7 6 23 23 C 1.31887 * 121.96015 * 0.25615 * 22 8 7 24 24 C 1.37990 * 121.00399 * 0.02562 * 23 22 8 25 25 C 1.50703 * 120.41596 * 179.97438 * 24 23 22 26 26 H 1.09003 * 109.47104 * 59.99492 * 1 2 3 27 27 H 1.09001 * 109.47545 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46995 * 299.99679 * 1 2 3 29 29 H 1.09006 * 109.46974 * 240.00052 * 2 1 3 30 30 H 1.08994 * 109.47242 * 120.00518 * 2 1 3 31 31 H 1.07997 * 120.53562 * 359.97438 * 7 6 4 32 32 H 0.96996 * 120.00087 * 179.72443 * 9 8 7 33 33 H 0.96996 * 119.99841 * 5.06349 * 15 14 12 34 34 H 1.09004 * 109.47036 * 185.23486 * 20 10 9 35 35 H 1.08995 * 109.47485 * 305.23745 * 20 10 9 36 36 H 1.08995 * 109.46961 * 59.99623 * 21 20 10 37 37 H 1.08996 * 109.47358 * 180.02562 * 21 20 10 38 38 H 1.09004 * 109.46915 * 300.00336 * 21 20 10 39 39 H 1.07994 * 119.49495 * 180.02562 * 23 22 8 40 40 H 1.08995 * 109.46698 * 95.93256 * 25 24 23 41 41 H 1.08997 * 109.46871 * 215.93040 * 25 24 23 42 42 H 1.08998 * 109.46819 * 335.93177 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3490 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9136 0.0011 7 6 3.0871 4.0314 0.1173 8 6 3.6617 5.2980 0.1080 9 7 2.8507 6.4218 0.2181 10 6 1.3986 6.2683 0.3367 11 1 1.1740 5.3724 0.9156 12 6 0.8213 7.4739 1.0328 13 1 0.4264 8.2948 0.4526 14 6 0.7973 7.5289 2.4102 15 7 1.2022 6.4961 3.1167 16 14 0.1971 9.0732 3.2730 17 1 -0.1941 10.0860 2.2598 18 1 -0.9768 8.7423 4.1203 19 1 1.2843 9.6187 4.1247 20 6 0.7834 6.1417 -1.0584 21 6 1.2696 4.8480 -1.7147 22 7 4.9727 5.4447 0.0012 23 6 5.7845 4.4108 -0.1052 24 6 5.2953 3.1205 -0.1100 25 6 6.2350 1.9487 -0.2328 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0173 3.9148 0.2084 32 1 3.2462 7.3074 0.2162 33 1 1.5861 5.7245 2.6716 34 1 -0.3033 6.1210 -0.9757 35 1 1.0853 6.9938 -1.6674 36 1 0.9677 3.9959 -1.1057 37 1 0.8317 4.7580 -2.7088 38 1 2.3563 4.8686 -1.7973 39 1 6.8483 4.5765 -0.1898 40 1 6.4661 1.5628 0.7600 41 1 5.7635 1.1656 -0.8264 42 1 7.1550 2.2704 -0.7208 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161052491.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -73.096790 kcal Electronic energy + Delta-G solvation = -24184.306472 eV Core-core repulsion = 20742.554885 eV Total energy + Delta-G solvation = -3441.751586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.02466 -40.86178 -38.40519 -37.68279 -34.92023 -34.34379 -33.16799 -32.47257 -31.93901 -28.86455 -26.83853 -26.27870 -24.92329 -24.34930 -23.21656 -22.14025 -21.43894 -19.69387 -18.98787 -18.24670 -17.71666 -17.49697 -16.76811 -16.17249 -16.02168 -15.67725 -15.49629 -15.30873 -15.05153 -14.68298 -14.43411 -14.40536 -14.12774 -13.77205 -13.60456 -13.25006 -12.98445 -12.92571 -12.72862 -12.64334 -12.56002 -12.51775 -12.11841 -11.92492 -11.69000 -11.62407 -11.51239 -11.02231 -10.84845 -10.62942 -10.51185 -10.36817 -8.70978 -8.29892 -6.52259 -0.40481 0.38905 1.48751 1.51135 1.55245 1.60585 1.78755 2.40935 2.54230 2.90467 3.26442 3.45108 3.74362 3.96439 3.97660 4.01468 4.06924 4.18957 4.22639 4.29393 4.30919 4.48325 4.59661 4.69650 4.79865 4.80919 4.83154 4.88103 4.89897 5.03731 5.06520 5.08973 5.12392 5.24906 5.31020 5.43926 5.46960 5.66145 5.81770 6.11674 6.33026 6.48455 6.56986 6.96212 7.28848 7.35378 8.66071 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.005304 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.612556 B = 5277.579469 C = 6202.186399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.516 3.484 5 O -0.507 6.507 6 C -0.062 4.062 7 C -0.191 4.191 8 C 0.382 3.618 9 N -0.698 5.698 10 C 0.250 3.750 11 H 0.023 0.977 12 C -0.611 4.611 13 H 0.057 0.943 14 C -0.013 4.013 15 N -0.918 5.918 16 Si 1.119 2.881 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.286 1.286 20 C -0.116 4.116 21 C -0.144 4.144 22 N -0.553 5.553 23 C 0.143 3.857 24 C -0.164 4.164 25 C -0.094 4.094 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.390 0.610 33 H 0.261 0.739 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.194 0.806 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -10.241 -7.879 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.277 6.277 4 C 0.361 3.639 5 O -0.397 6.397 6 C -0.070 4.070 7 C -0.217 4.217 8 C 0.145 3.855 9 N -0.326 5.326 10 C 0.148 3.852 11 H 0.041 0.959 12 C -0.650 4.650 13 H 0.076 0.924 14 C -0.215 4.215 15 N -0.553 5.553 16 Si 0.941 3.059 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.212 1.212 20 C -0.155 4.155 21 C -0.201 4.201 22 N -0.272 5.272 23 C -0.016 4.016 24 C -0.170 4.170 25 C -0.150 4.150 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.225 0.775 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.210 0.790 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.785 -9.119 -6.394 11.480 hybrid contribution 0.087 -1.190 -1.226 1.711 sum 2.872 -10.309 -7.620 13.138 Atomic orbital electron populations 1.21854 0.90737 1.04596 1.03412 1.23387 0.96914 0.78449 1.03134 1.86607 1.23034 1.34566 1.83473 1.21107 0.80988 0.89312 0.72477 1.90733 1.60129 1.42571 1.46293 1.19213 0.94099 0.89723 1.04006 1.21913 1.01545 0.91062 1.07191 1.18835 0.87980 0.88146 0.90572 1.46383 1.06667 1.04608 1.74958 1.18848 0.76471 0.96780 0.93053 0.95931 1.22404 1.42999 1.05581 0.93996 0.92447 1.27288 0.94126 1.03855 0.96254 1.70857 1.38382 1.06143 1.39918 0.82896 0.76336 0.71618 0.75023 1.19232 1.20556 1.21185 1.21816 1.00001 0.97301 0.96388 1.22068 1.00355 0.97358 1.00349 1.67172 1.03240 1.36691 1.20051 1.22836 1.00177 0.85813 0.92733 1.20849 0.92336 0.98018 1.05761 1.20744 0.97416 0.94216 1.02669 0.91398 0.87295 0.92185 0.90170 0.90908 0.84259 0.77513 0.92865 0.91850 0.92983 0.92863 0.91899 0.93890 0.78961 0.91485 0.90901 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.29 71.98 0.74 -1.93 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.36 -11.25 9.59 -55.76 -0.53 -11.79 16 4 C 0.52 17.29 7.87 70.43 0.55 17.85 16 5 O -0.51 -16.91 13.29 20.05 0.27 -16.64 16 6 C -0.06 -2.20 5.90 -19.91 -0.12 -2.32 16 7 C -0.19 -7.56 6.30 22.80 0.14 -7.42 16 8 C 0.38 15.99 6.49 133.06 0.86 16.85 16 9 N -0.70 -31.15 5.18 -328.17 -1.70 -32.85 16 10 C 0.25 11.65 1.91 44.24 0.08 11.73 16 11 H 0.02 1.18 4.98 -2.38 -0.01 1.17 16 12 C -0.61 -31.42 8.50 25.60 0.22 -31.21 16 13 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 14 C -0.01 -0.67 5.46 84.65 0.46 -0.21 16 15 N -0.92 -53.29 13.62 21.45 0.29 -53.00 16 16 Si 1.12 47.51 29.91 68.60 2.05 49.56 16 17 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 18 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 20 C -0.12 -4.59 5.59 30.59 0.17 -4.42 16 21 C -0.14 -4.99 8.22 71.98 0.59 -4.40 16 22 N -0.55 -21.34 10.36 -193.41 -2.00 -23.35 16 23 C 0.14 4.46 10.82 84.63 0.92 5.38 16 24 C -0.16 -5.13 5.93 -19.49 -0.12 -5.25 16 25 C -0.09 -2.33 8.86 71.24 0.63 -1.70 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.14 5.78 3.67 -2.91 -0.01 5.77 16 32 H 0.39 17.66 8.72 -92.71 -0.81 16.85 16 33 H 0.26 15.51 6.67 -92.71 -0.62 14.89 16 34 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.85 6.36 -2.39 -0.02 1.84 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.57 5.39 -2.38 -0.01 1.56 16 39 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.98 5.89 -2.39 -0.01 1.97 16 42 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 Total: -1.00 -62.12 340.46 4.35 -57.77 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.39 Total: 35.65 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 5.59 Total: -5.36 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.41 Total: -109.19 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.27 Total: -28.43 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.05 Total: 49.56 kcal Total: -62.12 4.35 -57.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161052491.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.326 kcal (2) G-P(sol) polarization free energy of solvation -62.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds