Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47243 * 2 1 4 4 C 1.52993 * 109.47315 * 239.99821 * 2 1 3 5 5 O 1.45207 * 109.47233 * 119.99836 * 2 1 3 6 6 C 1.34238 * 116.99899 * 59.99742 * 5 2 1 7 7 O 1.20827 * 119.99521 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99826 * 180.02562 * 6 5 2 9 9 C 1.52997 * 109.46785 * 180.02562 * 8 6 5 10 10 N 1.46504 * 109.46940 * 179.97438 * 9 8 6 11 11 C 1.38826 * 119.99721 * 180.02562 * 10 9 8 12 12 C 1.39799 * 119.58861 * 359.97438 * 11 10 9 13 13 C 1.38587 * 119.49293 * 180.02562 * 12 11 10 14 14 C 1.38394 * 118.68209 * 359.97438 * 13 12 11 15 15 C 1.40555 * 119.14625 * 0.02562 * 14 13 12 16 16 C 1.41315 * 119.78116 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00069 * 353.78525 * 16 15 14 18 18 C 1.40029 * 120.00077 * 173.78390 * 16 15 14 19 19 N 1.30750 * 119.99571 * 6.34781 * 18 16 15 20 20 Si 1.86792 * 120.00248 * 186.35390 * 18 16 15 21 21 H 1.48498 * 109.47380 * 94.98353 * 20 18 16 22 22 H 1.48499 * 109.47300 * 214.98297 * 20 18 16 23 23 H 1.48499 * 109.47031 * 334.98143 * 20 18 16 24 24 N 1.31957 * 119.57987 * 179.72928 * 11 10 9 25 25 H 1.08996 * 109.47224 * 299.99760 * 1 2 3 26 26 H 1.08996 * 109.46987 * 60.00116 * 1 2 3 27 27 H 1.09009 * 109.46997 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47538 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47034 * 299.99855 * 3 2 1 30 30 H 1.09009 * 109.47108 * 60.00026 * 3 2 1 31 31 H 1.09009 * 109.47310 * 300.00081 * 4 2 1 32 32 H 1.09001 * 109.47468 * 60.00272 * 4 2 1 33 33 H 1.09003 * 109.47587 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47213 * 60.00556 * 8 6 5 35 35 H 1.09005 * 109.47084 * 299.99866 * 8 6 5 36 36 H 1.08995 * 109.47761 * 299.99912 * 9 8 6 37 37 H 1.09001 * 109.47456 * 60.00188 * 9 8 6 38 38 H 0.96988 * 120.00163 * 0.02562 * 10 9 8 39 39 H 1.08001 * 120.25236 * 359.97438 * 12 11 10 40 40 H 1.08000 * 120.65944 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.42762 * 179.97438 * 14 13 12 42 42 H 0.97003 * 119.99838 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9685 1.3380 7 8 0.9566 -2.5027 0.5079 8 6 2.1173 -2.7434 2.5443 9 6 1.5708 -4.1707 2.4746 10 7 2.0224 -4.9243 3.6470 11 6 1.6503 -6.2525 3.8039 12 6 0.8440 -6.8622 2.8382 13 6 0.4733 -8.1881 2.9971 14 6 0.9168 -8.8724 4.1153 15 6 1.7253 -8.2040 5.0509 16 6 2.1852 -8.8897 6.1977 17 1 1.8353 -9.8901 6.4054 18 6 3.0948 -8.2721 7.0650 19 7 3.4233 -7.0195 6.8839 20 14 3.8389 -9.2376 8.4803 21 1 5.1531 -9.7906 8.0655 22 1 4.0261 -8.3393 9.6479 23 1 2.9289 -10.3504 8.8529 24 7 2.0661 -6.9250 4.8604 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6767 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.7530 -2.2584 3.4499 35 1 3.2068 -2.7722 2.5606 36 1 0.4814 -4.1424 2.4580 37 1 1.9354 -4.6556 1.5690 38 1 2.5813 -4.4953 4.3135 39 1 0.5119 -6.3040 1.9754 40 1 -0.1487 -8.6779 2.2625 41 1 0.6445 -9.9063 4.2675 42 1 4.0531 -6.5916 7.4848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163414374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = -74.167058 kcal Electronic energy + Delta-G solvation = -22739.368843 eV Core-core repulsion = 19297.570846 eV Total energy + Delta-G solvation = -3441.797997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.91539 -40.13752 -38.34668 -36.91285 -35.26926 -35.04814 -32.80213 -32.06462 -30.00523 -28.38107 -28.29497 -27.27378 -25.60792 -23.47899 -22.65258 -21.96000 -20.62391 -19.29202 -18.39652 -17.94630 -17.47513 -17.31483 -16.61117 -16.41225 -15.92193 -15.90363 -15.19845 -15.17437 -14.87440 -14.55878 -14.47737 -14.19451 -13.76705 -13.36456 -13.19294 -12.98049 -12.95414 -12.87626 -12.86824 -12.71405 -12.65317 -12.52465 -12.35889 -12.22647 -12.13717 -11.72722 -11.40814 -11.26944 -11.02996 -10.68524 -9.84150 -9.46173 -8.33777 -8.23732 -6.46898 1.05522 1.15978 1.32930 1.43516 1.53466 1.57325 1.59337 2.26831 2.71236 2.92531 3.55572 3.73912 3.78596 3.86456 3.96146 3.97476 4.09306 4.36349 4.43747 4.58676 4.59992 4.70373 4.75872 4.81867 4.82163 4.86283 4.87796 4.90762 4.99591 5.00490 5.11434 5.12844 5.25903 5.29598 5.37180 5.52490 5.71187 5.95757 6.04389 6.23778 6.51566 6.77220 6.83714 6.93924 7.21015 8.32538 8.51517 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028403 B = 0.002831 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.561322 B = 9888.735118 C =10670.001158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.354 6.354 6 C 0.474 3.526 7 O -0.523 6.523 8 C -0.117 4.117 9 C 0.159 3.841 10 N -0.732 5.732 11 C 0.396 3.604 12 C -0.370 4.370 13 C -0.031 4.031 14 C -0.342 4.342 15 C 0.258 3.742 16 C -0.470 4.470 17 H 0.087 0.913 18 C 0.026 3.974 19 N -0.750 5.750 20 Si 0.987 3.013 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.257 1.257 24 N -0.562 5.562 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.399 0.601 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 16.826 -10.157 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.069 3.931 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.272 6.272 6 C 0.318 3.682 7 O -0.412 6.412 8 C -0.155 4.155 9 C 0.034 3.966 10 N -0.368 5.368 11 C 0.155 3.845 12 C -0.396 4.396 13 C -0.055 4.055 14 C -0.365 4.365 15 C 0.131 3.869 16 C -0.502 4.502 17 H 0.105 0.895 18 C -0.196 4.196 19 N -0.372 5.372 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.181 1.181 24 N -0.285 5.285 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.234 0.766 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.122 0.878 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.159 17.332 -9.940 19.981 hybrid contribution -0.228 -0.865 -0.017 0.895 sum -0.068 16.467 -9.957 19.243 Atomic orbital electron populations 1.22469 0.93968 1.03545 1.03850 1.22526 0.94676 0.93488 0.82417 1.21873 1.02422 0.90763 1.04229 1.22471 1.01842 1.02029 0.97496 1.86547 1.69777 1.24758 1.46083 1.23421 0.76824 0.80875 0.87056 1.90610 1.36155 1.70385 1.44085 1.21426 1.05086 0.93085 0.95859 1.20759 0.98579 0.89481 0.87782 1.44089 1.58294 1.08268 1.26170 1.18875 0.89300 0.86125 0.90151 1.20952 1.16088 0.97828 1.04684 1.21001 0.95312 0.93608 0.95571 1.21706 1.13183 1.00879 1.00686 1.18691 0.88127 0.87650 0.92439 1.19931 1.23039 1.01527 1.05695 0.89532 1.26959 0.95982 0.95750 1.00913 1.70235 1.22742 1.11642 1.32556 0.85132 0.78814 0.78762 0.76555 1.19035 1.19150 1.18065 1.68184 1.30096 1.09140 1.21092 0.91687 0.89080 0.92203 0.91191 0.88260 0.91185 0.92206 0.89074 0.91703 0.85297 0.85334 0.92862 0.92910 0.76598 0.87021 0.85473 0.87808 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.37 71.98 0.60 -2.58 16 2 C 0.10 1.84 1.13 -10.80 -0.01 1.83 16 3 C -0.14 -1.57 8.85 71.98 0.64 -0.93 16 4 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 5 O -0.35 -7.67 9.89 -51.50 -0.51 -8.18 16 6 C 0.47 11.59 7.27 71.24 0.52 12.11 16 7 O -0.52 -15.27 11.48 21.96 0.25 -15.02 16 8 C -0.12 -2.64 5.93 29.85 0.18 -2.46 16 9 C 0.16 4.98 4.17 86.38 0.36 5.34 16 10 N -0.73 -28.91 5.72 -344.98 -1.97 -30.89 16 11 C 0.40 19.80 7.65 133.42 1.02 20.82 16 12 C -0.37 -17.50 9.34 22.73 0.21 -17.29 16 13 C -0.03 -1.45 10.15 22.39 0.23 -1.22 16 14 C -0.34 -17.90 9.83 22.87 0.22 -17.67 16 15 C 0.26 14.95 6.54 40.18 0.26 15.21 16 16 C -0.47 -26.32 9.13 23.46 0.21 -26.10 16 17 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 18 C 0.03 1.34 5.49 85.29 0.47 1.81 16 19 N -0.75 -40.35 11.48 21.84 0.25 -40.10 16 20 Si 0.99 38.63 29.56 68.60 2.03 40.66 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 23 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 24 N -0.56 -32.07 7.91 -186.58 -1.48 -33.55 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.06 1.39 5.89 -2.38 -0.01 1.37 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 1.39 5.89 -2.38 -0.01 1.37 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.05 1.77 7.88 -2.39 -0.02 1.75 16 37 H 0.05 1.76 7.88 -2.39 -0.02 1.74 16 38 H 0.40 15.15 8.59 -92.72 -0.80 14.36 16 39 H 0.11 4.75 6.68 -2.91 -0.02 4.73 16 40 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 41 H 0.10 5.06 8.06 -2.91 -0.02 5.03 16 42 H 0.28 13.38 8.29 -92.71 -0.77 12.61 16 Total: -1.00 -68.65 347.94 4.31 -64.34 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.23 Total: 36.46 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.51 Total: -13.73 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.20 Total: -104.54 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.26 Total: -23.20 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -68.65 4.31 -64.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163414374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.828 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds