Wall clock time and date at job start Tue Mar 31 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 C 1.53000 * 109.47294 * 239.99908 * 2 1 3 5 5 O 1.45200 * 109.47176 * 119.99534 * 2 1 3 6 6 C 1.34231 * 116.99838 * 60.00295 * 5 2 1 7 7 O 1.20832 * 120.00008 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00334 * 180.02562 * 6 5 2 9 9 C 1.53000 * 109.47609 * 179.97438 * 8 6 5 10 10 N 1.46498 * 109.47394 * 179.97438 * 9 8 6 11 11 C 1.39721 * 120.00011 * 180.02562 * 10 9 8 12 12 C 1.39337 * 120.36293 * 359.71698 * 11 10 9 13 13 N 1.31990 * 121.20756 * 179.72808 * 12 11 10 14 14 C 1.31498 * 122.05432 * 0.58923 * 13 12 11 15 15 C 1.40762 * 120.56348 * 359.68459 * 14 13 12 16 16 C 1.41427 * 120.62043 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99792 * 335.80210 * 16 15 14 18 18 C 1.39929 * 120.00253 * 155.80407 * 16 15 14 19 19 N 1.30822 * 119.99878 * 342.93648 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 162.93448 * 18 16 15 21 21 H 1.48501 * 109.47104 * 89.99843 * 20 18 16 22 22 H 1.48498 * 109.47243 * 210.00207 * 20 18 16 23 23 H 1.48503 * 109.46976 * 330.00137 * 20 18 16 24 24 C 1.38652 * 120.36030 * 180.02562 * 11 10 9 25 25 H 1.08995 * 109.47725 * 300.00130 * 1 2 3 26 26 H 1.09001 * 109.47216 * 60.00284 * 1 2 3 27 27 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46937 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46998 * 299.99192 * 3 2 1 30 30 H 1.08997 * 109.47214 * 59.99895 * 3 2 1 31 31 H 1.08996 * 109.46985 * 299.99513 * 4 2 1 32 32 H 1.08996 * 109.47157 * 60.00230 * 4 2 1 33 33 H 1.09001 * 109.46845 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47299 * 59.99893 * 8 6 5 35 35 H 1.09002 * 109.47163 * 300.00123 * 8 6 5 36 36 H 1.09007 * 109.46846 * 59.99865 * 9 8 6 37 37 H 1.09002 * 109.47079 * 300.00322 * 9 8 6 38 38 H 0.96998 * 119.99649 * 0.02562 * 10 9 8 39 39 H 1.08005 * 119.39577 * 0.02562 * 12 11 10 40 40 H 1.08001 * 119.71562 * 179.70058 * 14 13 12 41 41 H 0.97004 * 120.00162 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.93570 * 359.95654 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5028 0.5079 8 6 2.1172 -2.7433 2.5443 9 6 1.5698 -4.1704 2.4753 10 7 2.0214 -4.9239 3.6477 11 6 1.6461 -6.2604 3.8062 12 6 0.8377 -6.8823 2.8568 13 7 0.4776 -8.1454 2.9872 14 6 0.8495 -8.8745 4.0164 15 6 1.6623 -8.3256 5.0260 16 6 2.0635 -9.1088 6.1332 17 1 1.4744 -9.9634 6.4318 18 6 3.2235 -8.7766 6.8416 19 7 4.1085 -7.9741 6.3083 20 14 3.5085 -9.4787 8.5490 21 1 4.2426 -10.7649 8.4391 22 1 4.3086 -8.5192 9.3517 23 1 2.2009 -9.7104 9.2136 24 6 2.0687 -6.9804 4.9131 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 1.7530 -2.2583 3.4499 35 1 3.2068 -2.7721 2.5607 36 1 1.9338 -4.6557 1.5696 37 1 0.4803 -4.1412 2.4591 38 1 2.5809 -4.4949 4.3138 39 1 0.5036 -6.3219 1.9961 40 1 0.5288 -9.9034 4.0874 41 1 4.9125 -7.7435 6.7995 42 1 2.6923 -6.5238 5.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163414393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:22 Heat of formation + Delta-G solvation = -71.164390 kcal Electronic energy + Delta-G solvation = -22652.145125 eV Core-core repulsion = 19210.477334 eV Total energy + Delta-G solvation = -3441.667791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.00335 -38.44240 -37.38698 -35.50566 -34.31856 -33.91822 -31.54642 -30.18355 -27.75759 -27.68367 -27.66077 -25.61732 -24.17476 -22.13827 -21.24737 -20.48079 -19.73573 -17.58278 -17.02743 -16.65828 -16.52326 -15.87382 -15.33429 -14.94500 -14.87248 -14.71248 -14.16793 -13.99869 -13.91034 -13.29762 -12.88488 -12.74081 -12.62428 -12.35418 -12.21032 -12.18435 -11.87600 -11.76033 -11.56456 -11.49386 -11.42953 -11.36353 -11.15013 -10.90382 -10.61559 -10.53762 -10.13337 -9.89120 -9.48232 -9.29454 -8.02543 -7.73098 -6.83148 -6.39747 -4.44549 2.10778 2.43637 2.76072 3.04299 3.08523 3.14004 3.26862 3.89333 4.13976 4.41476 4.46735 4.59635 4.62330 4.67792 4.87028 4.98380 5.18039 5.24904 5.34150 5.39860 5.44823 5.55973 5.59810 5.70214 5.77384 5.98541 6.02648 6.02792 6.06209 6.20235 6.36807 6.58952 6.67883 6.91296 7.10627 7.17658 7.57404 7.69342 7.74120 7.98309 8.20124 8.43824 8.62881 8.77931 8.88387 9.78915 10.12471 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.002734 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.276368 B =10240.144892 C =10916.399518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.353 6.353 6 C 0.470 3.530 7 O -0.498 6.498 8 C -0.127 4.127 9 C 0.148 3.852 10 N -0.757 5.757 11 C 0.174 3.826 12 C -0.095 4.095 13 N -0.446 5.446 14 C -0.050 4.050 15 C 0.095 3.905 16 C -0.451 4.451 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.789 5.789 20 Si 0.909 3.091 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.208 4.208 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.391 0.609 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.280 0.720 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 17.833 -7.095 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.271 6.271 6 C 0.313 3.687 7 O -0.385 6.385 8 C -0.165 4.165 9 C 0.022 3.978 10 N -0.392 5.392 11 C 0.073 3.927 12 C -0.254 4.254 13 N -0.153 5.153 14 C -0.215 4.215 15 C 0.089 3.911 16 C -0.482 4.482 17 H 0.100 0.900 18 C -0.142 4.142 19 N -0.414 5.414 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.238 4.238 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.224 0.776 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.748 17.504 -8.185 19.338 hybrid contribution 1.077 0.395 1.561 1.938 sum 0.329 17.898 -6.623 19.088 Atomic orbital electron populations 1.22494 0.93968 1.04946 1.02667 1.22181 0.94462 0.92238 0.83129 1.21850 1.02221 0.92671 1.03001 1.22496 1.01700 1.03341 0.96556 1.86549 1.69941 1.25497 1.45112 1.23415 0.77395 0.80493 0.87417 1.90611 1.34955 1.69766 1.43166 1.21555 1.04066 0.95691 0.95174 1.20797 0.99045 0.87754 0.90165 1.44227 1.59578 1.10036 1.25341 1.18630 0.94841 0.83386 0.95821 1.21296 1.09381 0.92993 1.01776 1.66845 1.19498 1.05888 1.23055 1.22350 1.07456 0.98634 0.93049 1.18272 0.89607 0.91337 0.91836 1.19532 1.06938 1.11474 1.10222 0.90007 1.25940 0.95037 0.93924 0.99315 1.69832 1.06967 1.28011 1.36613 0.86303 0.79406 0.79373 0.81613 1.19418 1.20146 1.18371 1.21071 1.09354 0.94451 0.98925 0.92010 0.91093 0.89609 0.91478 0.90405 0.91485 0.89602 0.91093 0.91990 0.87302 0.87236 0.92049 0.92062 0.77575 0.86620 0.85931 0.90903 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.37 37.15 0.31 -1.39 16 2 C 0.12 1.10 1.13 -90.62 -0.10 0.99 16 3 C -0.14 -0.96 8.85 37.16 0.33 -0.64 16 4 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 5 O -0.35 -3.96 9.89 -39.26 -0.39 -4.35 16 6 C 0.47 5.78 7.27 36.01 0.26 6.04 16 7 O -0.50 -7.20 11.48 -18.75 -0.22 -7.41 16 8 C -0.13 -1.43 5.93 -27.88 -0.17 -1.59 16 9 C 0.15 2.24 4.21 -4.04 -0.02 2.23 16 10 N -0.76 -13.67 5.74 -58.57 -0.34 -14.00 16 11 C 0.17 4.04 6.66 -83.70 -0.56 3.48 16 12 C -0.10 -2.31 10.49 -17.08 -0.18 -2.49 16 13 N -0.45 -11.56 10.33 -12.37 -0.13 -11.69 16 14 C -0.05 -1.32 10.97 -16.74 -0.18 -1.50 16 15 C 0.09 2.54 5.59 -106.69 -0.60 1.95 16 16 C -0.45 -11.78 9.08 -37.74 -0.34 -12.13 16 17 H 0.08 2.03 7.90 -52.48 -0.41 1.62 16 18 C 0.08 1.87 5.18 -17.35 -0.09 1.78 16 19 N -0.79 -19.81 10.93 55.55 0.61 -19.21 16 20 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.21 -5.31 8.67 -38.39 -0.33 -5.65 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.99 5.89 -51.93 -0.31 0.69 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.00 5.89 -51.93 -0.31 0.70 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 37 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 38 H 0.39 6.35 8.49 -40.82 -0.35 6.00 16 39 H 0.12 2.58 6.73 -52.48 -0.35 2.23 16 40 H 0.12 2.98 8.06 -52.49 -0.42 2.56 16 41 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 42 H 0.13 3.22 6.22 -52.49 -0.33 2.90 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -29.79 346.63 -7.86 -37.64 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.24 Total: 10.97 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -1.35 Total: -10.33 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.14 Total: -44.90 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.60 Total: -11.76 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.79 -7.86 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163414393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.522 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds