Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47031 * 2 1 4 4 C 1.53000 * 109.47294 * 239.99908 * 2 1 3 5 5 O 1.45200 * 109.47176 * 119.99534 * 2 1 3 6 6 C 1.34231 * 116.99838 * 60.00295 * 5 2 1 7 7 O 1.20832 * 120.00008 * 0.02562 * 6 5 2 8 8 C 1.50700 * 120.00334 * 180.02562 * 6 5 2 9 9 C 1.53000 * 109.47609 * 179.97438 * 8 6 5 10 10 N 1.46498 * 109.47394 * 179.97438 * 9 8 6 11 11 C 1.39721 * 120.00011 * 180.02562 * 10 9 8 12 12 C 1.39337 * 120.36293 * 359.71698 * 11 10 9 13 13 N 1.31990 * 121.20756 * 179.72808 * 12 11 10 14 14 C 1.31498 * 122.05432 * 0.58923 * 13 12 11 15 15 C 1.40762 * 120.56348 * 359.68459 * 14 13 12 16 16 C 1.41427 * 120.62043 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99792 * 335.80210 * 16 15 14 18 18 C 1.39929 * 120.00253 * 155.80407 * 16 15 14 19 19 N 1.30822 * 119.99878 * 342.93648 * 18 16 15 20 20 Si 1.86798 * 120.00145 * 162.93448 * 18 16 15 21 21 H 1.48501 * 109.47104 * 89.99843 * 20 18 16 22 22 H 1.48498 * 109.47243 * 210.00207 * 20 18 16 23 23 H 1.48503 * 109.46976 * 330.00137 * 20 18 16 24 24 C 1.38652 * 120.36030 * 180.02562 * 11 10 9 25 25 H 1.08995 * 109.47725 * 300.00130 * 1 2 3 26 26 H 1.09001 * 109.47216 * 60.00284 * 1 2 3 27 27 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46937 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46998 * 299.99192 * 3 2 1 30 30 H 1.08997 * 109.47214 * 59.99895 * 3 2 1 31 31 H 1.08996 * 109.46985 * 299.99513 * 4 2 1 32 32 H 1.08996 * 109.47157 * 60.00230 * 4 2 1 33 33 H 1.09001 * 109.46845 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47299 * 59.99893 * 8 6 5 35 35 H 1.09002 * 109.47163 * 300.00123 * 8 6 5 36 36 H 1.09007 * 109.46846 * 59.99865 * 9 8 6 37 37 H 1.09002 * 109.47079 * 300.00322 * 9 8 6 38 38 H 0.96998 * 119.99649 * 0.02562 * 10 9 8 39 39 H 1.08005 * 119.39577 * 0.02562 * 12 11 10 40 40 H 1.08001 * 119.71562 * 179.70058 * 14 13 12 41 41 H 0.97004 * 120.00162 * 179.97438 * 19 18 16 42 42 H 1.07995 * 120.93570 * 359.95654 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5028 0.5079 8 6 2.1172 -2.7433 2.5443 9 6 1.5698 -4.1704 2.4753 10 7 2.0214 -4.9239 3.6477 11 6 1.6461 -6.2604 3.8062 12 6 0.8377 -6.8823 2.8568 13 7 0.4776 -8.1454 2.9872 14 6 0.8495 -8.8745 4.0164 15 6 1.6623 -8.3256 5.0260 16 6 2.0635 -9.1088 6.1332 17 1 1.4744 -9.9634 6.4318 18 6 3.2235 -8.7766 6.8416 19 7 4.1085 -7.9741 6.3083 20 14 3.5085 -9.4787 8.5490 21 1 4.2426 -10.7649 8.4391 22 1 4.3086 -8.5192 9.3517 23 1 2.2009 -9.7104 9.2136 24 6 2.0687 -6.9804 4.9131 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 1.7530 -2.2583 3.4499 35 1 3.2068 -2.7721 2.5607 36 1 1.9338 -4.6557 1.5696 37 1 0.4803 -4.1412 2.4591 38 1 2.5809 -4.4949 4.3138 39 1 0.5036 -6.3219 1.9961 40 1 0.5288 -9.9034 4.0874 41 1 4.9125 -7.7435 6.7995 42 1 2.6923 -6.5238 5.6674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163414393.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -88.391583 kcal Electronic energy + Delta-G solvation = -22652.892152 eV Core-core repulsion = 19210.477334 eV Total energy + Delta-G solvation = -3442.414818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.91667 -40.28888 -38.36686 -36.99847 -35.81864 -35.11045 -32.95156 -32.08961 -29.34666 -28.38850 -28.29908 -27.53458 -25.47321 -23.82174 -22.63780 -22.10567 -20.62428 -19.21468 -18.22624 -17.81818 -17.47650 -17.33420 -17.21026 -16.45187 -16.37678 -15.88884 -15.22727 -15.16247 -14.93722 -14.59075 -14.47227 -14.23608 -13.50595 -13.38614 -13.29061 -13.22104 -13.11240 -12.96076 -12.88100 -12.82387 -12.78176 -12.61072 -12.38629 -12.19884 -12.14330 -11.77201 -11.41376 -11.16925 -11.12074 -11.03094 -10.00353 -9.70322 -8.68213 -8.15002 -6.42672 0.93520 1.16249 1.20501 1.42199 1.52606 1.54523 1.59319 2.22228 2.74267 2.80208 3.55289 3.73354 3.77981 3.79798 3.85789 3.95636 4.03093 4.26550 4.42202 4.58293 4.59412 4.65871 4.75278 4.81317 4.81528 4.82730 4.83997 4.87490 4.90833 4.97616 5.12494 5.19200 5.25340 5.29236 5.31599 5.52715 5.69824 5.85263 6.01552 6.32251 6.71420 6.76328 6.81057 6.83625 7.07707 7.81235 8.29560 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.029740 B = 0.002734 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.276368 B =10240.144892 C =10916.399518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 C -0.136 4.136 4 C -0.182 4.182 5 O -0.354 6.354 6 C 0.472 3.528 7 O -0.524 6.524 8 C -0.116 4.116 9 C 0.149 3.851 10 N -0.742 5.742 11 C 0.186 3.814 12 C -0.110 4.110 13 N -0.457 5.457 14 C -0.078 4.078 15 C 0.070 3.930 16 C -0.482 4.482 17 H 0.083 0.917 18 C 0.038 3.962 19 N -0.813 5.813 20 Si 0.986 3.014 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.259 1.259 24 C -0.230 4.230 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.402 0.598 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.291 0.709 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 19.781 -6.382 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.069 3.931 3 C -0.193 4.193 4 C -0.239 4.239 5 O -0.271 6.271 6 C 0.315 3.685 7 O -0.414 6.414 8 C -0.153 4.153 9 C 0.025 3.975 10 N -0.376 5.376 11 C 0.082 3.918 12 C -0.269 4.269 13 N -0.164 5.164 14 C -0.242 4.242 15 C 0.065 3.935 16 C -0.511 4.511 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.438 5.438 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.188 1.188 23 H -0.183 1.183 24 C -0.261 4.261 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.238 0.762 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.217 19.499 -7.488 20.889 hybrid contribution 0.791 -0.109 1.232 1.468 sum 1.008 19.390 -6.257 20.399 Atomic orbital electron populations 1.22467 0.93997 1.03515 1.03858 1.22513 0.94641 0.93493 0.82410 1.21871 1.02423 0.90733 1.04235 1.22472 1.01844 1.02008 0.97557 1.86540 1.69781 1.24786 1.46017 1.23517 0.76849 0.80888 0.87202 1.90624 1.36201 1.70383 1.44162 1.21435 1.05098 0.92979 0.95817 1.20802 0.98652 0.89778 0.88298 1.44220 1.58755 1.08348 1.26313 1.18607 0.93431 0.85241 0.94485 1.21620 1.09824 0.92839 1.02663 1.66814 1.19779 1.06728 1.23105 1.22476 1.08821 0.99235 0.93630 1.18618 0.90113 0.92315 0.92419 1.19819 1.08096 1.12129 1.11072 0.89854 1.26804 0.94045 0.94037 1.02978 1.69863 1.07407 1.28312 1.38205 0.85145 0.79314 0.78845 0.76065 1.18731 1.18849 1.18272 1.21059 1.10550 0.94524 0.99962 0.91607 0.89151 0.92261 0.91174 0.88340 0.91106 0.92281 0.89134 0.91687 0.84970 0.85218 0.93297 0.92907 0.76239 0.85029 0.85332 0.89840 0.86243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.37 71.98 0.60 -2.53 16 2 C 0.10 1.81 1.13 -10.80 -0.01 1.79 16 3 C -0.14 -1.50 8.85 71.98 0.64 -0.86 16 4 C -0.18 -3.19 8.37 71.98 0.60 -2.58 16 5 O -0.35 -7.36 9.89 -51.42 -0.51 -7.86 16 6 C 0.47 11.10 7.27 71.24 0.52 11.61 16 7 O -0.52 -15.19 11.48 21.95 0.25 -14.94 16 8 C -0.12 -2.37 5.93 29.85 0.18 -2.20 16 9 C 0.15 4.40 4.21 86.38 0.36 4.77 16 10 N -0.74 -26.11 5.74 -339.22 -1.95 -28.06 16 11 C 0.19 8.66 6.66 38.25 0.25 8.92 16 12 C -0.11 -5.37 10.49 84.93 0.89 -4.48 16 13 N -0.46 -24.21 10.33 -193.04 -1.99 -26.21 16 14 C -0.08 -4.20 10.97 85.36 0.94 -3.26 16 15 C 0.07 3.89 5.59 -21.21 -0.12 3.77 16 16 C -0.48 -25.57 9.08 23.47 0.21 -25.36 16 17 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 18 C 0.04 1.84 5.18 85.25 0.44 2.29 16 19 N -0.81 -40.61 10.93 21.82 0.24 -40.37 16 20 Si 0.99 36.59 29.59 68.60 2.03 38.62 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 22 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 C -0.23 -11.96 8.67 23.04 0.20 -11.76 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.37 5.89 -2.39 -0.01 1.35 16 28 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.38 5.89 -2.39 -0.01 1.36 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.59 7.92 -2.38 -0.02 1.57 16 37 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 38 H 0.40 12.43 8.49 -92.71 -0.79 11.64 16 39 H 0.13 5.89 6.73 -2.91 -0.02 5.87 16 40 H 0.13 6.52 8.06 -2.91 -0.02 6.49 16 41 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 42 H 0.12 6.24 6.22 -2.91 -0.02 6.22 16 Total: -1.00 -65.34 346.63 4.02 -61.32 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.24 Total: 37.39 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 5.71 Total: -19.89 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -3.70 Total: -94.63 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.26 Total: -22.80 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -65.34 4.02 -61.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163414393.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.072 kcal (2) G-P(sol) polarization free energy of solvation -65.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds