Wall clock time and date at job start Tue Mar 31 2020 06:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 H 1.09005 * 109.46917 * 184.22738 * 3 2 1 5 5 C 1.50702 * 109.46835 * 304.22648 * 3 2 1 6 6 H 1.07997 * 119.99860 * 120.00648 * 5 3 2 7 7 C 1.37872 * 119.99897 * 300.00055 * 5 3 2 8 8 N 1.31515 * 120.00540 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47110 * 89.99706 * 9 7 5 11 11 H 1.48495 * 109.47256 * 209.99938 * 9 7 5 12 12 H 1.48499 * 109.46909 * 330.00217 * 9 7 5 13 13 N 1.46895 * 109.47063 * 64.22955 * 3 2 1 14 14 C 1.46902 * 111.00472 * 87.13176 * 13 3 2 15 15 H 1.08998 * 109.46534 * 322.61033 * 14 13 3 16 16 C 1.52991 * 109.47351 * 82.60993 * 14 13 3 17 17 C 1.52994 * 109.46861 * 202.61595 * 14 13 3 18 18 C 1.50697 * 109.47813 * 64.99990 * 17 14 13 19 19 C 1.38234 * 120.00373 * 89.99225 * 18 17 14 20 20 C 1.38235 * 120.00222 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99844 * 0.27856 * 20 19 18 22 22 N 1.48014 * 120.00182 * 179.72414 * 21 20 19 23 23 O 1.21803 * 119.99784 * 0.02562 * 22 21 20 24 24 O 1.21793 * 120.00212 * 180.02562 * 22 21 20 25 25 C 1.38240 * 119.99837 * 359.53378 * 21 20 19 26 26 C 1.38236 * 119.99382 * 270.02231 * 18 17 14 27 27 H 1.09006 * 109.47244 * 175.88737 * 1 2 3 28 28 H 1.09003 * 109.47359 * 295.88671 * 1 2 3 29 29 H 1.08997 * 109.47053 * 55.88694 * 1 2 3 30 30 H 1.08994 * 109.47443 * 239.99501 * 2 1 3 31 31 H 1.09005 * 109.46916 * 120.00129 * 2 1 3 32 32 H 0.96999 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00015 * 211.08245 * 13 3 2 34 34 H 1.09006 * 109.47319 * 60.00225 * 16 14 13 35 35 H 1.09002 * 109.47505 * 180.02562 * 16 14 13 36 36 H 1.09000 * 109.47819 * 300.00650 * 16 14 13 37 37 H 1.09000 * 109.47228 * 304.99244 * 17 14 13 38 38 H 1.09006 * 109.46953 * 184.99590 * 17 14 13 39 39 H 1.07997 * 119.99705 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.00452 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.99820 * 180.20609 * 25 21 20 42 42 H 1.07996 * 120.00701 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1274 1.4434 -0.0758 5 6 1.4539 2.1824 -1.1748 6 1 0.8422 3.0573 -1.0113 7 6 1.6987 1.7425 -2.4583 8 7 2.4433 0.6769 -2.6575 9 14 0.9729 2.6601 -3.9145 10 1 1.9219 3.7120 -4.3598 11 1 0.7305 1.7085 -5.0284 12 1 -0.3108 3.2896 -3.5130 13 7 1.6355 2.1049 1.2472 14 6 2.6224 1.8735 2.3104 15 1 3.0104 0.8580 2.2310 16 6 3.7726 2.8717 2.1646 17 6 1.9554 2.0594 3.6746 18 6 0.9040 0.9975 3.8688 19 6 1.2395 -0.2084 4.4556 20 6 0.2748 -1.1822 4.6342 21 6 -1.0241 -0.9525 4.2208 22 7 -2.0557 -1.9975 4.4064 23 8 -1.7602 -3.0598 4.9239 24 8 -3.2001 -1.7953 4.0418 25 6 -1.3605 0.2549 3.6376 26 6 -0.3960 1.2291 3.4596 27 1 -0.3634 -1.0251 -0.0737 28 1 -0.3634 0.4487 0.9246 29 1 -0.3633 0.5763 -0.8508 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.6159 0.3677 -3.5605 33 1 1.4867 3.0921 1.1006 34 1 3.3846 3.8873 2.2439 35 1 4.5052 2.6997 2.9532 36 1 4.2478 2.7393 1.1926 37 1 1.4902 3.0441 3.7204 38 1 2.7061 1.9754 4.4606 39 1 2.2551 -0.3892 4.7752 40 1 0.5368 -2.1242 5.0929 41 1 -2.3761 0.4357 3.3176 42 1 -0.6581 2.1711 3.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173219543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:49 Heat of formation + Delta-G solvation = 4.004456 kcal Electronic energy + Delta-G solvation = -23984.920386 eV Core-core repulsion = 20546.512160 eV Total energy + Delta-G solvation = -3438.408225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01510 -39.59142 -37.16740 -36.42032 -34.39998 -32.30890 -31.32152 -31.13280 -29.00764 -27.65899 -25.86377 -24.88123 -23.35160 -23.01349 -21.78543 -20.58496 -19.20064 -18.96520 -18.51075 -17.37665 -16.58249 -15.75841 -15.57490 -14.99358 -14.68082 -14.23229 -13.95260 -13.84384 -13.68134 -13.18233 -12.90650 -12.45211 -12.15543 -12.05595 -11.87420 -11.79336 -11.48995 -11.26193 -11.25445 -11.02104 -10.99472 -10.94958 -10.77831 -10.66110 -10.38420 -10.10660 -9.81529 -9.52825 -9.21729 -9.05117 -8.86531 -8.54770 -7.36498 -6.09259 -4.14576 0.00568 1.11031 1.52171 1.59369 3.23361 3.31797 3.33859 3.42845 4.33323 4.46648 4.58705 4.64691 4.86881 5.06437 5.14727 5.23368 5.29026 5.33915 5.49772 5.60729 5.70758 5.78485 5.85701 5.88197 5.98714 6.11128 6.27584 6.37085 6.42807 6.48190 6.51706 6.59914 6.66958 6.79452 7.14290 7.24913 7.42665 7.66701 7.71751 7.76123 7.78932 8.15543 8.28040 8.55942 8.94017 9.50516 10.96777 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.004771 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.220704 B = 5867.695808 C = 6926.891310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.087 3.913 15 H 0.073 0.927 16 C -0.177 4.177 17 C -0.080 4.080 18 C 0.002 3.998 19 C -0.124 4.124 20 C -0.057 4.057 21 C -0.056 4.056 22 N 0.035 4.965 23 O -0.175 6.175 24 O -0.169 6.169 25 C -0.054 4.054 26 C -0.083 4.083 27 H 0.008 0.992 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.006 0.994 32 H 0.261 0.739 33 H 0.331 0.669 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.513 1.987 14.225 14.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.136 4.136 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.310 5.310 14 C -0.024 4.024 15 H 0.092 0.908 16 C -0.236 4.236 17 C -0.118 4.118 18 C 0.002 3.998 19 C -0.143 4.143 20 C -0.077 4.077 21 C -0.139 4.139 22 N 0.552 4.448 23 O -0.389 6.389 24 O -0.384 6.384 25 C -0.073 4.073 26 C -0.102 4.102 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.158 0.842 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.367 1.826 14.171 14.293 hybrid contribution 0.134 0.579 -1.286 1.416 sum -0.233 2.405 12.885 13.110 Atomic orbital electron populations 1.21474 0.97558 0.97253 1.01346 1.21382 0.95045 0.98275 0.98888 1.19093 0.93674 0.91461 0.84578 0.98020 1.21144 1.31697 1.11953 0.90450 0.92394 1.24867 0.95090 0.94945 0.98800 1.69883 1.38003 1.23354 1.21345 0.86616 0.79538 0.79545 0.82423 1.20847 1.21254 1.19872 1.60821 1.44252 1.16887 1.09041 1.21470 0.90875 0.99065 0.91000 0.90842 1.22480 0.99284 0.99708 1.02177 1.20881 0.95841 0.96802 0.98227 1.20257 0.94752 0.94567 0.90236 1.21046 0.99374 0.92804 1.01090 1.20906 0.89942 1.00483 0.96322 1.21033 0.89076 0.90688 1.13143 1.43680 1.01917 1.01630 0.97614 1.94500 1.86761 1.13561 1.44043 1.94517 1.05240 1.85997 1.52673 1.21048 1.01906 0.90300 0.94030 1.21070 0.91487 0.99853 0.97756 0.97257 0.94023 0.92290 0.89984 0.97552 0.92934 0.85128 0.92834 0.93278 0.91842 0.90320 0.90771 0.84222 0.83658 0.83484 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.52 37.16 0.35 -2.24 16 2 C -0.10 -2.23 5.55 -26.73 -0.15 -2.38 16 3 C 0.22 4.90 2.10 -68.87 -0.14 4.75 16 4 H 0.00 0.05 6.94 -51.93 -0.36 -0.31 16 5 C -0.51 -12.77 7.05 -34.44 -0.24 -13.02 16 6 H 0.06 1.43 7.59 -52.49 -0.40 1.03 16 7 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.23 11.36 55.43 0.63 -23.60 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.68 -11.74 4.93 -100.96 -0.50 -12.24 16 14 C 0.09 1.23 2.39 -67.72 -0.16 1.07 16 15 H 0.07 1.17 7.26 -51.93 -0.38 0.80 16 16 C -0.18 -2.34 9.14 37.15 0.34 -2.00 16 17 C -0.08 -0.86 5.03 -27.89 -0.14 -1.00 16 18 C 0.00 0.03 4.95 -104.63 -0.52 -0.49 16 19 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 20 C -0.06 -0.71 9.56 -39.58 -0.38 -1.08 16 21 C -0.06 -0.80 6.85 -79.95 -0.55 -1.34 16 22 N 0.03 0.56 4.45 33.96 0.15 0.71 16 23 O -0.18 -2.85 18.45 -29.46 -0.54 -3.39 16 24 O -0.17 -2.82 18.45 -29.46 -0.54 -3.36 16 25 C -0.05 -0.71 9.55 -39.58 -0.38 -1.08 16 26 C -0.08 -1.03 8.24 -39.58 -0.33 -1.35 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.04 0.82 6.73 -51.93 -0.35 0.48 16 29 H 0.06 1.40 6.94 -51.93 -0.36 1.04 16 30 H 0.08 2.15 6.19 -51.93 -0.32 1.82 16 31 H 0.01 0.13 7.52 -51.93 -0.39 -0.26 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.33 5.68 7.96 -39.29 -0.31 5.37 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.01 7.28 -51.93 -0.38 0.63 16 37 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 41 H 0.15 1.80 7.61 -52.49 -0.40 1.40 16 42 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -27.71 348.09 -9.49 -37.19 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.13 Total: 4.36 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.77 Total: -20.34 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.28 Total: -35.13 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -1.09 Total: -6.75 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -27.71 -9.49 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173219543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.198 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds