Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 H 1.09005 * 109.46917 * 184.22738 * 3 2 1 5 5 C 1.50702 * 109.46835 * 304.22648 * 3 2 1 6 6 H 1.07997 * 119.99860 * 120.00648 * 5 3 2 7 7 C 1.37872 * 119.99897 * 300.00055 * 5 3 2 8 8 N 1.31515 * 120.00540 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47110 * 89.99706 * 9 7 5 11 11 H 1.48495 * 109.47256 * 209.99938 * 9 7 5 12 12 H 1.48499 * 109.46909 * 330.00217 * 9 7 5 13 13 N 1.46895 * 109.47063 * 64.22955 * 3 2 1 14 14 C 1.46902 * 111.00472 * 87.13176 * 13 3 2 15 15 H 1.08998 * 109.46534 * 322.61033 * 14 13 3 16 16 C 1.52991 * 109.47351 * 82.60993 * 14 13 3 17 17 C 1.52994 * 109.46861 * 202.61595 * 14 13 3 18 18 C 1.50697 * 109.47813 * 64.99990 * 17 14 13 19 19 C 1.38234 * 120.00373 * 89.99225 * 18 17 14 20 20 C 1.38235 * 120.00222 * 179.97438 * 19 18 17 21 21 C 1.38241 * 119.99844 * 0.27856 * 20 19 18 22 22 N 1.48014 * 120.00182 * 179.72414 * 21 20 19 23 23 O 1.21803 * 119.99784 * 0.02562 * 22 21 20 24 24 O 1.21793 * 120.00212 * 180.02562 * 22 21 20 25 25 C 1.38240 * 119.99837 * 359.53378 * 21 20 19 26 26 C 1.38236 * 119.99382 * 270.02231 * 18 17 14 27 27 H 1.09006 * 109.47244 * 175.88737 * 1 2 3 28 28 H 1.09003 * 109.47359 * 295.88671 * 1 2 3 29 29 H 1.08997 * 109.47053 * 55.88694 * 1 2 3 30 30 H 1.08994 * 109.47443 * 239.99501 * 2 1 3 31 31 H 1.09005 * 109.46916 * 120.00129 * 2 1 3 32 32 H 0.96999 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.00904 * 111.00015 * 211.08245 * 13 3 2 34 34 H 1.09006 * 109.47319 * 60.00225 * 16 14 13 35 35 H 1.09002 * 109.47505 * 180.02562 * 16 14 13 36 36 H 1.09000 * 109.47819 * 300.00650 * 16 14 13 37 37 H 1.09000 * 109.47228 * 304.99244 * 17 14 13 38 38 H 1.09006 * 109.46953 * 184.99590 * 17 14 13 39 39 H 1.07997 * 119.99705 * 0.02562 * 19 18 17 40 40 H 1.07996 * 120.00452 * 180.02562 * 20 19 18 41 41 H 1.07996 * 119.99820 * 180.20609 * 25 21 20 42 42 H 1.07996 * 120.00701 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1274 1.4434 -0.0758 5 6 1.4539 2.1824 -1.1748 6 1 0.8422 3.0573 -1.0113 7 6 1.6987 1.7425 -2.4583 8 7 2.4433 0.6769 -2.6575 9 14 0.9729 2.6601 -3.9145 10 1 1.9219 3.7120 -4.3598 11 1 0.7305 1.7085 -5.0284 12 1 -0.3108 3.2896 -3.5130 13 7 1.6355 2.1049 1.2472 14 6 2.6224 1.8735 2.3104 15 1 3.0104 0.8580 2.2310 16 6 3.7726 2.8717 2.1646 17 6 1.9554 2.0594 3.6746 18 6 0.9040 0.9975 3.8688 19 6 1.2395 -0.2084 4.4556 20 6 0.2748 -1.1822 4.6342 21 6 -1.0241 -0.9525 4.2208 22 7 -2.0557 -1.9975 4.4064 23 8 -1.7602 -3.0598 4.9239 24 8 -3.2001 -1.7953 4.0418 25 6 -1.3605 0.2549 3.6376 26 6 -0.3960 1.2291 3.4596 27 1 -0.3634 -1.0251 -0.0737 28 1 -0.3634 0.4487 0.9246 29 1 -0.3633 0.5763 -0.8508 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.6159 0.3677 -3.5605 33 1 1.4867 3.0921 1.1006 34 1 3.3846 3.8873 2.2439 35 1 4.5052 2.6997 2.9532 36 1 4.2478 2.7393 1.1926 37 1 1.4902 3.0441 3.7204 38 1 2.7061 1.9754 4.4606 39 1 2.2551 -0.3892 4.7752 40 1 0.5368 -2.1242 5.0929 41 1 -2.3761 0.4357 3.3176 42 1 -0.6581 2.1711 3.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173219543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -9.406807 kcal Electronic energy + Delta-G solvation = -23985.501942 eV Core-core repulsion = 20546.512160 eV Total energy + Delta-G solvation = -3438.989781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.19344 -40.58551 -38.56532 -37.64224 -35.91750 -33.70990 -32.81559 -32.22482 -30.45990 -28.75780 -27.64868 -25.99662 -25.11799 -23.99472 -22.91384 -21.85549 -20.58321 -20.28078 -19.71561 -18.56954 -18.33060 -17.05094 -16.74546 -16.41959 -15.75820 -15.63326 -15.34703 -15.16781 -14.67215 -14.58204 -14.23286 -13.84507 -13.65705 -13.45219 -13.21947 -12.92825 -12.82546 -12.71388 -12.52163 -12.43507 -12.35525 -12.28762 -12.20295 -12.06601 -11.87154 -11.67258 -11.52514 -11.31325 -10.75447 -10.52456 -10.18568 -10.07527 -8.86080 -8.07830 -6.17771 -1.13255 0.18391 0.42105 0.49279 1.40172 1.44059 1.51303 2.43008 2.46732 3.22746 3.54030 3.62770 3.67596 3.79091 4.06231 4.19148 4.23403 4.39793 4.45977 4.56067 4.66009 4.71119 4.77425 4.86950 4.91809 4.94570 4.99772 5.01172 5.07103 5.20524 5.28080 5.31180 5.37827 5.48414 5.53686 5.60212 5.70766 5.74051 5.84424 5.93964 6.30515 6.54476 6.57354 6.89459 7.14379 7.51281 8.97116 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.004771 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.220704 B = 5867.695808 C = 6926.891310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.090 4.090 3 C 0.231 3.769 4 H -0.031 1.031 5 C -0.515 4.515 6 H 0.060 0.940 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.945 3.055 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.267 1.267 13 N -0.671 5.671 14 C 0.087 3.913 15 H 0.055 0.945 16 C -0.171 4.171 17 C -0.069 4.069 18 C 0.000 4.000 19 C -0.119 4.119 20 C -0.060 4.060 21 C -0.075 4.075 22 N 0.035 4.965 23 O -0.184 6.184 24 O -0.196 6.196 25 C -0.062 4.062 26 C -0.088 4.088 27 H 0.010 0.990 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.257 0.743 33 H 0.335 0.665 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.170 0.830 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 3.441 15.856 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C 0.122 3.878 4 H -0.014 1.014 5 C -0.554 4.554 6 H 0.078 0.922 7 C -0.181 4.181 8 N -0.558 5.558 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.192 1.192 13 N -0.301 5.301 14 C -0.024 4.024 15 H 0.073 0.927 16 C -0.230 4.230 17 C -0.107 4.107 18 C 0.000 4.000 19 C -0.137 4.137 20 C -0.079 4.079 21 C -0.158 4.158 22 N 0.548 4.452 23 O -0.397 6.397 24 O -0.406 6.406 25 C -0.081 4.081 26 C -0.107 4.107 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.109 3.299 15.816 16.157 hybrid contribution 0.067 0.152 -1.733 1.741 sum 0.176 3.451 14.083 14.501 Atomic orbital electron populations 1.21332 0.96546 0.97171 1.01286 1.21222 0.95711 0.98391 0.97524 1.18755 0.91352 0.91405 0.86301 1.01379 1.21489 1.30801 1.11765 0.91309 0.92181 1.25550 0.95667 0.95656 1.01258 1.70026 1.39560 1.24818 1.21393 0.85758 0.79089 0.78362 0.79621 1.20451 1.21900 1.19173 1.60705 1.45283 1.16731 1.07414 1.21529 0.90845 0.98387 0.91639 0.92676 1.22386 0.99345 1.00084 1.01154 1.20839 0.96130 0.97197 0.96505 1.20498 0.94736 0.95097 0.89666 1.21409 1.00381 0.91955 0.99981 1.21186 0.89335 1.01438 0.95941 1.21273 0.89244 0.90551 1.14741 1.43992 1.02173 1.01915 0.97157 1.94473 1.86763 1.14282 1.44221 1.94503 1.06149 1.86271 1.53673 1.21177 1.02440 0.90301 0.94221 1.21245 0.91716 0.99917 0.97781 0.97047 0.92056 0.94489 0.93593 0.96636 0.93374 0.84743 0.91493 0.90542 0.95382 0.88734 0.87520 0.81232 0.82432 0.83316 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.52 71.98 0.69 -3.87 16 2 C -0.09 -4.12 5.55 30.59 0.17 -3.95 16 3 C 0.23 10.27 2.10 44.17 0.09 10.36 16 4 H -0.03 -1.60 6.94 -2.38 -0.02 -1.62 16 5 C -0.51 -25.53 7.05 25.60 0.18 -25.35 16 6 H 0.06 2.90 7.59 -2.91 -0.02 2.88 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -51.27 11.36 21.45 0.24 -51.02 16 9 Si 0.94 42.05 29.54 68.60 2.03 44.08 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 13 N -0.67 -22.00 4.93 -473.33 -2.33 -24.34 16 14 C 0.09 2.21 2.39 44.91 0.11 2.32 16 15 H 0.05 1.64 7.26 -2.39 -0.02 1.62 16 16 C -0.17 -4.07 9.14 71.98 0.66 -3.41 16 17 C -0.07 -1.18 5.03 29.85 0.15 -1.03 16 18 C 0.00 0.01 4.95 -19.87 -0.10 -0.09 16 19 C -0.12 -2.23 9.70 22.27 0.22 -2.01 16 20 C -0.06 -1.34 9.56 22.27 0.21 -1.13 16 21 C -0.07 -2.03 6.85 36.38 0.25 -1.78 16 22 N 0.04 1.12 4.45 -46.46 -0.21 0.92 16 23 O -0.18 -5.94 18.45 18.88 0.35 -5.59 16 24 O -0.20 -6.60 18.45 18.90 0.35 -6.25 16 25 C -0.06 -1.55 9.55 22.27 0.21 -1.34 16 26 C -0.09 -1.95 8.24 22.27 0.18 -1.77 16 27 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.06 2.35 6.73 -2.39 -0.02 2.33 16 29 H 0.04 1.73 6.94 -2.39 -0.02 1.71 16 30 H 0.05 2.46 6.19 -2.39 -0.01 2.44 16 31 H 0.01 0.65 7.52 -2.38 -0.02 0.63 16 32 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.33 10.76 7.96 -89.69 -0.71 10.04 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.03 0.86 7.28 -2.39 -0.02 0.84 16 37 H 0.09 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.11 1.23 8.09 -2.38 -0.02 1.21 16 39 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.16 3.07 7.61 -2.91 -0.02 3.05 16 41 H 0.15 3.56 7.61 -2.91 -0.02 3.53 16 42 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -61.14 348.09 4.21 -56.93 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.31 Total: 16.93 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.47 Total: -31.67 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -2.29 Total: -74.44 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.70 Total: -11.83 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -61.14 4.21 -56.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173219543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.521 kcal (2) G-P(sol) polarization free energy of solvation -61.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds