Wall clock time and date at job start Tue Mar 31 2020 06:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46826 * 2 1 4 4 H 1.08999 * 109.46855 * 174.47024 * 3 2 1 5 5 C 1.50697 * 109.47024 * 54.47177 * 3 2 1 6 6 H 1.08005 * 119.99325 * 239.99575 * 5 3 2 7 7 C 1.37871 * 120.00269 * 59.99671 * 5 3 2 8 8 N 1.31515 * 119.99784 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00104 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46889 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46702 * 120.00159 * 9 7 5 12 12 H 1.48493 * 109.47339 * 240.00415 * 9 7 5 13 13 N 1.46898 * 109.46819 * 294.46804 * 3 2 1 14 14 C 1.46904 * 111.00354 * 273.16903 * 13 3 2 15 15 H 1.08999 * 109.46809 * 38.57011 * 14 13 3 16 16 C 1.52996 * 109.47232 * 278.57331 * 14 13 3 17 17 C 1.52999 * 109.46920 * 158.57167 * 14 13 3 18 18 C 1.50706 * 109.46905 * 294.99932 * 17 14 13 19 19 C 1.38229 * 120.00166 * 269.72874 * 18 17 14 20 20 C 1.38234 * 119.99732 * 179.77130 * 19 18 17 21 21 C 1.38231 * 120.00235 * 0.50676 * 20 19 18 22 22 N 1.48021 * 120.00165 * 179.72988 * 21 20 19 23 23 O 1.21805 * 119.99791 * 180.02562 * 22 21 20 24 24 O 1.21796 * 119.99915 * 0.02562 * 22 21 20 25 25 C 1.38231 * 119.99663 * 359.74347 * 21 20 19 26 26 C 1.38230 * 120.00441 * 0.02562 * 25 21 20 27 27 H 1.09002 * 109.47392 * 297.48573 * 1 2 3 28 28 H 1.08998 * 109.47159 * 57.48372 * 1 2 3 29 29 H 1.09004 * 109.47212 * 177.47962 * 1 2 3 30 30 H 1.08999 * 109.47334 * 240.00127 * 2 1 3 31 31 H 1.09001 * 109.47131 * 119.99831 * 2 1 3 32 32 H 0.97001 * 119.99836 * 179.97438 * 8 7 5 33 33 H 1.00896 * 111.00299 * 37.13033 * 13 3 2 34 34 H 1.09002 * 109.46838 * 179.97438 * 16 14 13 35 35 H 1.08999 * 109.47484 * 299.99524 * 16 14 13 36 36 H 1.09000 * 109.47117 * 59.99776 * 16 14 13 37 37 H 1.08996 * 109.47269 * 55.00533 * 17 14 13 38 38 H 1.09000 * 109.46469 * 175.00493 * 17 14 13 39 39 H 1.08001 * 120.00246 * 0.02562 * 19 18 17 40 40 H 1.08001 * 119.99763 * 180.23581 * 20 19 18 41 41 H 1.08006 * 119.99761 * 179.97438 * 25 21 20 42 42 H 1.08003 * 120.00407 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1254 1.4442 0.0990 5 6 1.4289 2.1913 1.1563 6 1 0.8208 3.0649 0.9729 7 6 1.6461 1.7613 2.4481 8 7 2.3870 0.6978 2.6712 9 14 0.8892 2.6899 3.8814 10 1 0.1060 3.8417 3.3666 11 1 -0.0074 1.7821 4.6411 12 1 1.9669 3.1837 4.7757 13 7 1.6622 2.0954 -1.2606 14 6 2.6683 1.8501 -2.3026 15 1 3.0349 0.8269 -2.2199 16 6 3.8338 2.8253 -2.1259 17 6 2.0358 2.0555 -3.6805 18 6 0.9687 1.0149 -3.9036 19 6 1.2931 -0.1921 -4.4942 20 6 0.3152 -1.1484 -4.6944 21 6 -0.9890 -0.8936 -4.3138 22 7 -2.0372 -1.9153 -4.5337 23 8 -3.1865 -1.6906 -4.1986 24 8 -1.7505 -2.9807 -5.0496 25 6 -1.3143 0.3154 -3.7279 26 6 -0.3356 1.2699 -3.5233 27 1 -0.3634 0.4743 0.9117 28 1 -0.3633 0.5524 -0.8665 29 1 -0.3634 -1.0267 -0.0452 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.5401 0.3954 3.5801 33 1 0.7476 1.7955 -1.5633 34 1 4.5805 2.6429 -2.8988 35 1 3.4673 3.8484 -2.2086 36 1 4.2843 2.6789 -1.1442 37 1 1.5907 3.0491 -3.7316 38 1 2.8022 1.9607 -4.4498 39 1 2.3113 -0.3896 -4.7953 40 1 0.5694 -2.0929 -5.1524 41 1 -2.3334 0.5146 -3.4309 42 1 -0.5898 2.2147 -3.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173219547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:51 Heat of formation + Delta-G solvation = -7.133484 kcal Electronic energy + Delta-G solvation = -24004.566444 eV Core-core repulsion = 20565.675241 eV Total energy + Delta-G solvation = -3438.891203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.26448 -40.86782 -38.69560 -37.70011 -35.98675 -33.75328 -32.84165 -32.40082 -30.39148 -28.87943 -27.94305 -26.08052 -25.22003 -24.15825 -22.94937 -21.86530 -20.65014 -20.38017 -19.76839 -18.62907 -18.17981 -17.09374 -16.90788 -16.70854 -16.38599 -15.77145 -15.51899 -14.92446 -14.74310 -14.53192 -14.39014 -14.02339 -13.83574 -13.46486 -13.01083 -12.93629 -12.82722 -12.76803 -12.53674 -12.47989 -12.38521 -12.33074 -12.29077 -12.22617 -12.03629 -11.68292 -11.62273 -11.41566 -10.94362 -10.42848 -10.35152 -10.28247 -8.90632 -8.05510 -6.12915 -1.24262 -0.00188 0.28574 0.38718 1.40319 1.44379 1.53969 2.27966 2.45378 3.24414 3.40532 3.49755 3.55985 3.64404 3.92463 3.98415 4.12860 4.30013 4.40854 4.46470 4.51048 4.55040 4.66106 4.69560 4.74795 4.82201 4.89440 4.97722 5.00593 5.02962 5.15491 5.22736 5.29264 5.41339 5.43458 5.49861 5.54036 5.61918 5.73215 5.86793 6.34126 6.47435 6.71253 6.92737 7.02422 7.55488 8.99965 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.004742 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.517253 B = 5903.297139 C = 6950.002867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C 0.225 3.775 4 H 0.002 0.998 5 C -0.494 4.494 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.685 5.685 14 C 0.083 3.917 15 H 0.024 0.976 16 C -0.131 4.131 17 C -0.083 4.083 18 C -0.023 4.023 19 C -0.112 4.112 20 C -0.054 4.054 21 C -0.070 4.070 22 N 0.034 4.966 23 O -0.190 6.190 24 O -0.178 6.178 25 C -0.053 4.053 26 C -0.120 4.120 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.257 0.743 33 H 0.332 0.668 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 1.099 -16.636 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.174 4.174 3 C 0.116 3.884 4 H 0.020 0.980 5 C -0.533 4.533 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.319 5.319 14 C -0.027 4.027 15 H 0.042 0.958 16 C -0.189 4.189 17 C -0.120 4.120 18 C -0.024 4.024 19 C -0.130 4.130 20 C -0.073 4.073 21 C -0.154 4.154 22 N 0.547 4.453 23 O -0.401 6.401 24 O -0.393 6.393 25 C -0.072 4.072 26 C -0.138 4.138 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.192 0.808 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.052 2.104 -16.214 16.350 hybrid contribution -0.882 -1.214 1.152 1.892 sum -0.830 0.890 -15.061 15.111 Atomic orbital electron populations 1.21439 0.96444 0.98535 1.00962 1.21923 0.95926 1.00653 0.98930 1.18892 0.93793 0.88696 0.87006 0.98019 1.21344 1.29968 1.11205 0.90815 0.92806 1.25556 0.96055 0.95858 1.00991 1.70014 1.40335 1.25308 1.20633 0.85693 0.78216 0.78933 0.79928 1.19110 1.21275 1.21171 1.60894 1.04858 1.62740 1.03431 1.21516 0.93562 0.97061 0.90522 0.95813 1.21728 0.96875 0.99628 1.00695 1.21015 0.96499 0.97662 0.96795 1.20699 0.94973 0.95523 0.91191 1.21446 1.00711 0.91684 0.99142 1.21278 0.89145 1.01513 0.95329 1.21300 0.88794 0.91216 1.14054 1.43942 1.02260 1.01730 0.97336 1.94521 1.05728 1.85261 1.54589 1.94489 1.87619 1.13299 1.43873 1.21202 1.02632 0.90025 0.93343 1.21419 0.91841 1.00487 1.00062 0.93839 0.93181 0.95159 0.96141 0.92392 0.93398 0.84634 0.90286 0.91919 0.95467 0.88300 0.86586 0.80788 0.81845 0.82503 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.39 71.98 0.68 -4.13 16 2 C -0.13 -6.08 5.49 30.59 0.17 -5.92 16 3 C 0.22 10.44 2.13 44.17 0.09 10.54 16 4 H 0.00 0.10 6.85 -2.39 -0.02 0.08 16 5 C -0.49 -25.72 7.38 25.60 0.19 -25.53 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.71 5.24 84.65 0.44 1.16 16 8 N -0.92 -51.86 11.38 21.45 0.24 -51.61 16 9 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.69 -24.74 6.04 -473.31 -2.86 -27.59 16 14 C 0.08 2.32 2.47 44.91 0.11 2.44 16 15 H 0.02 0.73 7.24 -2.39 -0.02 0.72 16 16 C -0.13 -3.55 9.36 71.98 0.67 -2.88 16 17 C -0.08 -1.49 5.00 29.85 0.15 -1.34 16 18 C -0.02 -0.45 4.82 -19.86 -0.10 -0.54 16 19 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 20 C -0.05 -1.08 9.56 22.27 0.21 -0.87 16 21 C -0.07 -1.74 6.85 36.37 0.25 -1.49 16 22 N 0.03 0.99 4.45 -46.47 -0.21 0.78 16 23 O -0.19 -5.95 18.45 18.88 0.35 -5.60 16 24 O -0.18 -5.36 18.45 18.89 0.35 -5.02 16 25 C -0.05 -1.19 9.55 22.27 0.21 -0.98 16 26 C -0.12 -2.46 7.43 22.27 0.17 -2.29 16 27 H 0.04 1.99 7.11 -2.39 -0.02 1.97 16 28 H 0.05 1.80 5.76 -2.39 -0.01 1.79 16 29 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.02 0.84 7.47 -2.39 -0.02 0.82 16 31 H 0.06 3.05 6.24 -2.39 -0.01 3.04 16 32 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 33 H 0.33 11.01 3.43 -89.70 -0.31 10.71 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 0.91 7.19 -2.39 -0.02 0.90 16 37 H 0.10 1.67 8.09 -2.39 -0.02 1.66 16 38 H 0.12 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.16 2.78 7.61 -2.91 -0.02 2.76 16 41 H 0.16 3.29 7.61 -2.91 -0.02 3.27 16 42 H 0.16 2.99 7.61 -2.91 -0.02 2.97 16 Total: -1.00 -62.94 342.91 4.09 -58.85 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.72 Total: 18.68 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 3.47 Total: -33.54 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.82 Total: -78.43 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.70 Total: -10.62 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -62.94 4.09 -58.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173219547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.717 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds