Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47103 * 2 1 4 4 H 1.08998 * 109.46790 * 55.30556 * 3 2 1 5 5 C 1.50700 * 109.46789 * 175.30826 * 3 2 1 6 6 H 1.08004 * 120.00035 * 120.00739 * 5 3 2 7 7 C 1.37878 * 119.99947 * 299.99502 * 5 3 2 8 8 N 1.31514 * 120.00218 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99593 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47518 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47134 * 120.00515 * 9 7 5 12 12 H 1.48498 * 109.47109 * 239.99954 * 9 7 5 13 13 N 1.46899 * 109.46902 * 295.30762 * 3 2 1 14 14 C 1.46898 * 110.99760 * 153.97296 * 13 3 2 15 15 H 1.09003 * 109.47601 * 36.37579 * 14 13 3 16 16 C 1.53006 * 109.47140 * 276.37409 * 14 13 3 17 17 C 1.53006 * 109.47344 * 156.37451 * 14 13 3 18 18 C 1.50697 * 109.47089 * 295.00264 * 17 14 13 19 19 C 1.38235 * 119.99898 * 269.72490 * 18 17 14 20 20 C 1.38234 * 120.00275 * 179.76772 * 19 18 17 21 21 C 1.38234 * 119.99878 * 0.50312 * 20 19 18 22 22 N 1.48020 * 120.00274 * 179.72683 * 21 20 19 23 23 O 1.21801 * 120.00060 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99741 * 0.02562 * 22 21 20 25 25 C 1.38240 * 119.99641 * 359.74963 * 21 20 19 26 26 C 1.38229 * 120.00239 * 359.97438 * 25 21 20 27 27 H 1.09007 * 109.46835 * 296.18275 * 1 2 3 28 28 H 1.08992 * 109.47279 * 176.18583 * 1 2 3 29 29 H 1.09000 * 109.47238 * 56.17786 * 1 2 3 30 30 H 1.08994 * 109.47741 * 119.99781 * 2 1 3 31 31 H 1.09000 * 109.47148 * 240.00181 * 2 1 3 32 32 H 0.96994 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.00897 * 110.99730 * 277.92204 * 13 3 2 34 34 H 1.08992 * 109.46957 * 305.09379 * 16 14 13 35 35 H 1.08999 * 109.46628 * 65.09548 * 16 14 13 36 36 H 1.09003 * 109.47064 * 185.08981 * 16 14 13 37 37 H 1.08996 * 109.46832 * 54.99728 * 17 14 13 38 38 H 1.08994 * 109.47094 * 175.00080 * 17 14 13 39 39 H 1.08007 * 120.00085 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.00498 * 180.23494 * 20 19 18 41 41 H 1.08001 * 119.99800 * 179.97438 * 25 21 20 42 42 H 1.08002 * 120.00229 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6096 1.9801 0.8449 5 6 3.5425 1.4441 0.1162 6 1 4.1439 1.8901 -0.6621 7 6 4.1494 0.8763 1.2163 8 7 3.4171 0.3329 2.1640 9 14 6.0118 0.8788 1.3606 10 1 6.5996 1.5469 0.1718 11 1 6.4122 1.6121 2.5884 12 1 6.5043 -0.5201 1.4369 13 7 1.6450 2.1015 -1.2521 14 6 1.5434 3.5559 -1.0722 15 1 2.3213 3.8926 -0.3869 16 6 0.1698 3.9037 -0.4948 17 6 1.7191 4.2506 -2.4240 18 6 3.1159 4.0088 -2.9353 19 6 4.1310 4.8913 -2.6167 20 6 5.4133 4.6670 -3.0816 21 6 5.6784 3.5656 -3.8738 22 7 7.0502 3.3285 -4.3767 23 8 7.2837 2.3584 -5.0751 24 8 7.9456 4.1037 -4.0921 25 6 4.6622 2.6858 -4.1968 26 6 3.3811 2.9071 -3.7271 27 1 -0.3633 0.4535 0.9223 28 1 -0.3633 -1.0253 -0.0684 29 1 -0.3634 0.5720 -0.8537 30 1 1.8934 -0.5137 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8441 -0.0669 2.9377 33 1 2.2847 1.8733 -1.9982 34 1 -0.6089 3.4881 -1.1343 35 1 0.0799 3.4836 0.5070 36 1 0.0599 4.9870 -0.4457 37 1 0.9973 3.8492 -3.1353 38 1 1.5558 5.3218 -2.3060 39 1 3.9231 5.7540 -2.0010 40 1 6.2072 5.3545 -2.8296 41 1 4.8692 1.8256 -4.8160 42 1 2.5870 2.2200 -3.9797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173219551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = 2.009978 kcal Electronic energy + Delta-G solvation = -23986.660454 eV Core-core repulsion = 20548.165741 eV Total energy + Delta-G solvation = -3438.494712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05340 -39.74558 -37.03834 -36.45000 -34.33434 -32.19386 -31.40975 -31.36273 -29.29174 -27.75842 -26.03104 -24.90328 -23.21659 -22.85031 -21.72796 -19.96266 -19.53282 -19.24425 -18.55069 -17.41074 -16.75329 -15.91972 -15.70526 -14.93593 -14.87233 -14.66656 -14.04623 -13.80534 -13.39988 -13.11809 -12.88576 -12.55055 -12.13012 -12.01629 -11.58557 -11.53813 -11.47066 -11.34031 -11.27423 -11.15505 -11.04138 -11.02587 -10.86993 -10.67541 -10.57547 -10.17254 -9.66118 -9.61661 -9.34441 -9.17052 -9.11740 -8.44836 -7.40645 -6.08424 -4.21142 -0.05381 1.00693 1.44787 1.54667 3.19704 3.29368 3.32387 3.32882 4.32318 4.39326 4.50455 4.57283 4.81948 4.98688 5.09984 5.19849 5.24647 5.30484 5.53129 5.63515 5.70497 5.77469 5.86208 5.95496 6.05539 6.19318 6.28774 6.31005 6.34874 6.44964 6.52786 6.60022 6.64818 6.70234 7.04187 7.10433 7.36233 7.50511 7.69555 7.75983 7.99361 8.04311 8.23280 8.54693 8.90790 9.47354 10.91850 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.006262 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.266906 B = 4470.431300 C = 5862.666060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.543 4.543 6 H 0.050 0.950 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.882 3.118 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.686 5.686 14 C 0.091 3.909 15 H 0.050 0.950 16 C -0.134 4.134 17 C -0.092 4.092 18 C -0.016 4.016 19 C -0.115 4.115 20 C -0.052 4.052 21 C -0.055 4.055 22 N 0.034 4.966 23 O -0.167 6.167 24 O -0.171 6.171 25 C -0.047 4.047 26 C -0.113 4.113 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.326 0.674 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 8.452 -9.751 13.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.052 0.948 5 C -0.582 4.582 6 H 0.068 0.932 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.318 5.318 14 C -0.020 4.020 15 H 0.068 0.932 16 C -0.192 4.192 17 C -0.130 4.130 18 C -0.016 4.016 19 C -0.134 4.134 20 C -0.071 4.071 21 C -0.138 4.138 22 N 0.552 4.448 23 O -0.382 6.382 24 O -0.385 6.385 25 C -0.066 4.066 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.169 0.831 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.075 8.365 -9.224 13.447 hybrid contribution 2.596 0.015 0.235 2.607 sum -2.479 8.380 -8.989 12.537 Atomic orbital electron populations 1.21708 0.98966 0.98467 1.00351 1.21496 0.92125 0.99258 1.01632 1.19159 0.92639 0.91198 0.86179 0.94806 1.21815 0.92636 1.38223 1.05554 0.93221 1.24879 0.97646 0.94953 0.95717 1.69869 1.34693 1.38021 1.09466 0.86709 0.86350 0.77990 0.77985 1.20191 1.20882 1.20761 1.61099 1.55009 1.05373 1.10369 1.21338 0.97258 0.90433 0.92964 0.93215 1.21764 0.96753 0.99177 1.01528 1.21067 0.91323 1.01686 0.98886 1.20476 0.96926 0.92501 0.91707 1.21075 0.90987 1.00900 1.00422 1.20988 0.98470 0.94709 0.92911 1.21067 0.82130 1.02400 1.08169 1.43642 1.03236 0.99430 0.98538 1.94515 1.88803 1.20087 1.34816 1.94509 1.38948 1.43061 1.62025 1.21031 0.91317 0.97370 0.96932 1.21171 0.96069 0.97878 0.98005 0.94577 0.95700 0.93128 0.89197 0.95268 0.92862 0.85552 0.92482 0.92359 0.93648 0.89613 0.90169 0.83797 0.83345 0.83118 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.84 37.15 0.37 -2.30 16 2 C -0.11 -2.43 5.45 -26.73 -0.15 -2.58 16 3 C 0.22 4.95 1.79 -68.86 -0.12 4.83 16 4 H 0.03 0.87 7.06 -51.93 -0.37 0.50 16 5 C -0.54 -13.95 8.31 -34.44 -0.29 -14.24 16 6 H 0.05 1.29 7.73 -52.48 -0.41 0.89 16 7 C 0.07 1.90 5.29 -17.82 -0.09 1.80 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.69 16 9 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.69 -12.58 5.43 -100.94 -0.55 -13.13 16 14 C 0.09 1.41 2.46 -67.71 -0.17 1.25 16 15 H 0.05 0.91 7.69 -51.93 -0.40 0.52 16 16 C -0.13 -1.90 9.35 37.16 0.35 -1.55 16 17 C -0.09 -1.07 4.99 -27.88 -0.14 -1.21 16 18 C -0.02 -0.20 4.83 -104.63 -0.51 -0.70 16 19 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 20 C -0.05 -0.69 9.56 -39.58 -0.38 -1.07 16 21 C -0.05 -0.82 6.85 -79.95 -0.55 -1.37 16 22 N 0.03 0.57 4.45 33.96 0.15 0.72 16 23 O -0.17 -2.87 18.45 -29.46 -0.54 -3.42 16 24 O -0.17 -2.94 18.45 -29.46 -0.54 -3.48 16 25 C -0.05 -0.64 9.56 -39.58 -0.38 -1.02 16 26 C -0.11 -1.42 8.03 -39.59 -0.32 -1.74 16 27 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.93 7.64 -51.93 -0.40 0.53 16 30 H 0.09 2.33 5.96 -51.93 -0.31 2.02 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.33 5.86 5.20 -39.29 -0.20 5.66 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.95 7.41 -51.93 -0.38 0.56 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.15 1.77 7.61 -52.48 -0.40 1.37 16 41 H 0.15 1.84 7.61 -52.49 -0.40 1.44 16 42 H 0.15 1.64 7.56 -52.49 -0.40 1.25 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -28.73 349.64 -9.54 -38.27 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.17 Total: 4.89 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.75 Total: -21.70 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.23 Total: -36.09 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -1.09 Total: -6.90 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.73 -9.54 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173219551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.278 kcal (2) G-P(sol) polarization free energy of solvation -28.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds