Wall clock time and date at job start Tue Mar 31 2020 06:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47103 * 2 1 4 4 H 1.08998 * 109.46790 * 55.30556 * 3 2 1 5 5 C 1.50700 * 109.46789 * 175.30826 * 3 2 1 6 6 H 1.08004 * 120.00035 * 120.00739 * 5 3 2 7 7 C 1.37878 * 119.99947 * 299.99502 * 5 3 2 8 8 N 1.31514 * 120.00218 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99593 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47518 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47134 * 120.00515 * 9 7 5 12 12 H 1.48498 * 109.47109 * 239.99954 * 9 7 5 13 13 N 1.46899 * 109.46902 * 295.30762 * 3 2 1 14 14 C 1.46898 * 110.99760 * 153.97296 * 13 3 2 15 15 H 1.09003 * 109.47601 * 36.37579 * 14 13 3 16 16 C 1.53006 * 109.47140 * 276.37409 * 14 13 3 17 17 C 1.53006 * 109.47344 * 156.37451 * 14 13 3 18 18 C 1.50697 * 109.47089 * 295.00264 * 17 14 13 19 19 C 1.38235 * 119.99898 * 269.72490 * 18 17 14 20 20 C 1.38234 * 120.00275 * 179.76772 * 19 18 17 21 21 C 1.38234 * 119.99878 * 0.50312 * 20 19 18 22 22 N 1.48020 * 120.00274 * 179.72683 * 21 20 19 23 23 O 1.21801 * 120.00060 * 180.02562 * 22 21 20 24 24 O 1.21803 * 119.99741 * 0.02562 * 22 21 20 25 25 C 1.38240 * 119.99641 * 359.74963 * 21 20 19 26 26 C 1.38229 * 120.00239 * 359.97438 * 25 21 20 27 27 H 1.09007 * 109.46835 * 296.18275 * 1 2 3 28 28 H 1.08992 * 109.47279 * 176.18583 * 1 2 3 29 29 H 1.09000 * 109.47238 * 56.17786 * 1 2 3 30 30 H 1.08994 * 109.47741 * 119.99781 * 2 1 3 31 31 H 1.09000 * 109.47148 * 240.00181 * 2 1 3 32 32 H 0.96994 * 119.99964 * 179.97438 * 8 7 5 33 33 H 1.00897 * 110.99730 * 277.92204 * 13 3 2 34 34 H 1.08992 * 109.46957 * 305.09379 * 16 14 13 35 35 H 1.08999 * 109.46628 * 65.09548 * 16 14 13 36 36 H 1.09003 * 109.47064 * 185.08981 * 16 14 13 37 37 H 1.08996 * 109.46832 * 54.99728 * 17 14 13 38 38 H 1.08994 * 109.47094 * 175.00080 * 17 14 13 39 39 H 1.08007 * 120.00085 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.00498 * 180.23494 * 20 19 18 41 41 H 1.08001 * 119.99800 * 179.97438 * 25 21 20 42 42 H 1.08002 * 120.00229 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6096 1.9801 0.8449 5 6 3.5425 1.4441 0.1162 6 1 4.1439 1.8901 -0.6621 7 6 4.1494 0.8763 1.2163 8 7 3.4171 0.3329 2.1640 9 14 6.0118 0.8788 1.3606 10 1 6.5996 1.5469 0.1718 11 1 6.4122 1.6121 2.5884 12 1 6.5043 -0.5201 1.4369 13 7 1.6450 2.1015 -1.2521 14 6 1.5434 3.5559 -1.0722 15 1 2.3213 3.8926 -0.3869 16 6 0.1698 3.9037 -0.4948 17 6 1.7191 4.2506 -2.4240 18 6 3.1159 4.0088 -2.9353 19 6 4.1310 4.8913 -2.6167 20 6 5.4133 4.6670 -3.0816 21 6 5.6784 3.5656 -3.8738 22 7 7.0502 3.3285 -4.3767 23 8 7.2837 2.3584 -5.0751 24 8 7.9456 4.1037 -4.0921 25 6 4.6622 2.6858 -4.1968 26 6 3.3811 2.9071 -3.7271 27 1 -0.3633 0.4535 0.9223 28 1 -0.3633 -1.0253 -0.0684 29 1 -0.3634 0.5720 -0.8537 30 1 1.8934 -0.5137 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8441 -0.0669 2.9377 33 1 2.2847 1.8733 -1.9982 34 1 -0.6089 3.4881 -1.1343 35 1 0.0799 3.4836 0.5070 36 1 0.0599 4.9870 -0.4457 37 1 0.9973 3.8492 -3.1353 38 1 1.5558 5.3218 -2.3060 39 1 3.9231 5.7540 -2.0010 40 1 6.2072 5.3545 -2.8296 41 1 4.8692 1.8256 -4.8160 42 1 2.5870 2.2200 -3.9797 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173219551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:57 Heat of formation + Delta-G solvation = -12.223065 kcal Electronic energy + Delta-G solvation = -23987.277645 eV Core-core repulsion = 20548.165741 eV Total energy + Delta-G solvation = -3439.111903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.30363 -40.80509 -38.48154 -37.74333 -35.87311 -33.81745 -32.86372 -32.40901 -30.76519 -28.89716 -27.85694 -26.07062 -24.66751 -24.17538 -22.88574 -21.36938 -21.09640 -20.41178 -19.82794 -18.71757 -18.66454 -17.02963 -16.92650 -16.61640 -16.17628 -15.77704 -15.53230 -14.90869 -14.80198 -14.63355 -14.27836 -13.77727 -13.55676 -13.28018 -13.13400 -13.06853 -12.87972 -12.81209 -12.69452 -12.49487 -12.44948 -12.37620 -12.29616 -12.22992 -11.90029 -11.80147 -11.48158 -11.33645 -10.93647 -10.48400 -10.34181 -10.25237 -9.02584 -8.09682 -6.29475 -1.25081 0.01483 0.27653 0.37538 1.25213 1.31694 1.36812 2.29540 2.31586 3.10609 3.40279 3.50880 3.58459 3.68402 3.94284 4.01063 4.18279 4.29250 4.51867 4.54709 4.65107 4.69510 4.77063 4.81398 4.84043 4.91031 4.94294 5.03176 5.09036 5.15165 5.22387 5.27073 5.36201 5.46510 5.49485 5.54445 5.56886 5.67974 5.81297 6.12047 6.23126 6.40302 6.45066 6.87335 7.05683 7.41907 8.86236 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.012070 B = 0.006262 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.266906 B = 4470.431300 C = 5862.666060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.544 4.544 6 H 0.043 0.957 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 0.930 3.070 10 H -0.284 1.284 11 H -0.279 1.279 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.087 3.913 15 H 0.019 0.981 16 C -0.129 4.129 17 C -0.081 4.081 18 C -0.020 4.020 19 C -0.114 4.114 20 C -0.059 4.059 21 C -0.076 4.076 22 N 0.034 4.966 23 O -0.185 6.185 24 O -0.186 6.186 25 C -0.055 4.055 26 C -0.115 4.115 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.329 0.671 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.270 9.636 -10.645 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.117 3.883 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.061 0.939 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.758 3.242 10 H -0.209 1.209 11 H -0.205 1.205 12 H -0.208 1.208 13 N -0.308 5.308 14 C -0.023 4.023 15 H 0.037 0.963 16 C -0.187 4.187 17 C -0.118 4.118 18 C -0.020 4.020 19 C -0.132 4.132 20 C -0.079 4.079 21 C -0.160 4.160 22 N 0.547 4.453 23 O -0.398 6.398 24 O -0.398 6.398 25 C -0.075 4.075 26 C -0.133 4.133 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.189 0.811 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.564 9.551 -10.138 15.397 hybrid contribution 3.006 -0.312 0.525 3.068 sum -3.558 9.238 -9.612 13.799 Atomic orbital electron populations 1.21558 0.96191 0.99772 1.00632 1.21371 0.94593 0.98681 0.99730 1.18860 0.90753 0.91387 0.87269 0.97761 1.22123 0.94294 1.37054 1.04893 0.93859 1.25444 1.00443 0.95312 0.95962 1.69975 1.35700 1.38977 1.09892 0.85961 0.83029 0.77704 0.77541 1.20898 1.20513 1.20761 1.61021 1.54354 1.07285 1.08189 1.21421 0.97219 0.88716 0.94930 0.96306 1.21716 0.95988 1.01109 0.99843 1.21030 0.90979 1.03272 0.96543 1.20739 0.97623 0.92333 0.91306 1.21437 0.90232 1.01622 0.99936 1.21256 0.99514 0.94456 0.92626 1.21348 0.81197 1.03838 1.09573 1.43944 1.03982 0.99103 0.98262 1.94493 1.89247 1.20493 1.35546 1.94483 1.39808 1.43190 1.62360 1.21249 0.91516 0.97507 0.97189 1.21442 0.95967 0.98218 0.97669 0.95226 0.94054 0.91625 0.92590 0.95607 0.92970 0.85214 0.91353 0.95300 0.90629 0.87688 0.87007 0.81133 0.82331 0.82354 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 9.84 71.98 0.71 -3.93 16 2 C -0.10 -4.77 5.45 30.60 0.17 -4.60 16 3 C 0.23 10.33 1.79 44.17 0.08 10.41 16 4 H 0.00 0.23 7.06 -2.39 -0.02 0.21 16 5 C -0.54 -28.00 8.31 25.60 0.21 -27.79 16 6 H 0.04 2.24 7.73 -2.91 -0.02 2.22 16 7 C 0.03 1.54 5.29 84.65 0.45 1.99 16 8 N -0.91 -50.70 11.29 21.45 0.24 -50.46 16 9 Si 0.93 44.04 29.54 68.60 2.03 46.07 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.68 -23.62 5.43 -473.28 -2.57 -26.19 16 14 C 0.09 2.51 2.46 44.92 0.11 2.62 16 15 H 0.02 0.67 7.69 -2.39 -0.02 0.65 16 16 C -0.13 -3.29 9.35 71.98 0.67 -2.62 16 17 C -0.08 -1.55 4.99 29.85 0.15 -1.40 16 18 C -0.02 -0.43 4.83 -19.87 -0.10 -0.53 16 19 C -0.11 -2.49 9.70 22.27 0.22 -2.27 16 20 C -0.06 -1.51 9.56 22.27 0.21 -1.30 16 21 C -0.08 -2.25 6.85 36.37 0.25 -2.00 16 22 N 0.03 1.14 4.45 -46.46 -0.21 0.93 16 23 O -0.19 -6.46 18.45 18.88 0.35 -6.11 16 24 O -0.19 -6.44 18.45 18.88 0.35 -6.09 16 25 C -0.06 -1.45 9.56 22.27 0.21 -1.23 16 26 C -0.11 -2.62 8.03 22.27 0.18 -2.45 16 27 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.24 7.64 -2.39 -0.02 2.22 16 30 H 0.06 2.94 5.96 -2.39 -0.01 2.92 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.33 11.16 5.20 -89.70 -0.47 10.70 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 0.89 7.41 -2.39 -0.02 0.88 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 38 H 0.11 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 40 H 0.16 3.60 7.61 -2.91 -0.02 3.58 16 41 H 0.16 3.76 7.61 -2.91 -0.02 3.74 16 42 H 0.17 3.18 7.56 -2.91 -0.02 3.16 16 Total: -1.00 -62.92 349.64 4.26 -58.66 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.55 Total: 18.27 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.52 Total: -35.09 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -2.53 Total: -75.71 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.70 Total: -12.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -62.92 4.26 -58.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173219551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.436 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds