Wall clock time and date at job start Tue Mar 31 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47346 * 180.02562 * 17 16 14 19 19 N 1.31841 * 119.65780 * 90.00217 * 18 17 16 20 20 C 1.31844 * 121.78137 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.88551 * 0.02562 * 20 19 18 22 22 C 1.38536 * 119.22019 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.65659 * 269.72745 * 18 17 16 24 24 O 1.35907 * 120.47309 * 359.97438 * 23 18 17 25 25 C 1.42904 * 116.99860 * 180.02562 * 24 23 18 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.09000 * 109.47444 * 300.00712 * 17 16 14 36 36 H 1.09000 * 109.46920 * 60.00019 * 17 16 14 37 37 H 1.07999 * 119.55642 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.38678 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.80770 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47029 * 180.02562 * 25 24 23 41 41 H 1.09006 * 109.46889 * 300.00085 * 25 24 23 42 42 H 1.09000 * 109.47314 * 60.00253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 -1.3828 3.8936 2.5214 18 6 -1.7815 4.5675 3.8091 19 7 -1.5295 5.8503 3.9792 20 6 -1.8604 6.4819 5.0883 21 6 -2.4893 5.8156 6.1237 22 6 -2.7729 4.4666 5.9865 23 6 -2.4149 3.8329 4.8006 24 8 -2.6781 2.5121 4.6181 25 6 -3.3338 1.8275 5.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -1.4143 4.6181 1.7076 36 1 -2.0739 3.0781 2.3085 37 1 -1.6364 7.5335 5.1896 38 1 -2.7572 6.3410 7.0285 39 1 -3.2630 3.9209 6.7792 40 1 -3.4832 0.7833 5.4129 41 1 -2.7183 1.8822 6.5854 42 1 -4.2996 2.2947 5.8799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175512579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:01 Heat of formation + Delta-G solvation = -53.637561 kcal Electronic energy + Delta-G solvation = -23202.315098 eV Core-core repulsion = 19761.407327 eV Total energy + Delta-G solvation = -3440.907771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91225 -38.90737 -38.29936 -35.15714 -33.89521 -32.29379 -31.86047 -30.92987 -29.74544 -27.71171 -27.00156 -24.97749 -23.05966 -22.91745 -21.72513 -19.97942 -19.18102 -18.28948 -17.31037 -17.10533 -16.29911 -16.07124 -15.46463 -15.18950 -14.97141 -14.58218 -14.29904 -14.05733 -13.80804 -13.41158 -13.22900 -12.72815 -12.63340 -12.32981 -11.85819 -11.74799 -11.70519 -11.46215 -11.39504 -11.17957 -10.93472 -10.78968 -10.69227 -10.26130 -10.09329 -9.90092 -9.68058 -9.55936 -8.98162 -8.86711 -8.47473 -8.42140 -7.70493 -6.06879 -4.15866 0.92581 1.06654 2.96619 3.27539 3.34443 3.36883 3.56993 3.57203 4.08807 4.32632 4.42063 4.46696 4.55219 4.76217 4.84353 4.89945 5.06280 5.20652 5.24112 5.30915 5.44272 5.46197 5.71841 5.80146 5.85888 6.00293 6.16822 6.32208 6.46312 6.48768 6.54193 6.74237 7.00070 7.12012 7.27972 7.45506 7.57116 7.69029 7.81750 7.87515 7.98303 8.25328 8.78595 8.85590 9.26973 9.52029 10.98415 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.003268 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.691712 B = 8564.941591 C = 9123.726611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.503 3.497 15 O -0.550 6.550 16 C -0.132 4.132 17 C -0.046 4.046 18 C 0.115 3.885 19 N -0.444 5.444 20 C 0.061 3.939 21 C -0.142 4.142 22 C -0.167 4.167 23 C 0.081 3.919 24 O -0.301 6.301 25 C 0.025 3.975 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.021 0.979 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.157 0.843 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.055 0.945 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 6.229 18.824 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.288 3.712 15 O -0.429 6.429 16 C -0.173 4.173 17 C -0.084 4.084 18 C -0.025 4.025 19 N -0.153 5.153 20 C -0.096 4.096 21 C -0.162 4.162 22 C -0.193 4.193 23 C 0.033 3.967 24 O -0.212 6.212 25 C -0.071 4.071 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.174 0.826 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.181 6.423 17.117 21.969 hybrid contribution 0.755 -0.463 1.460 1.708 sum -11.425 5.959 18.577 22.609 Atomic orbital electron populations 1.21838 0.98325 0.97897 1.01343 1.21927 0.92649 0.99895 1.02116 1.18756 0.94049 0.89153 0.81258 0.93339 1.21260 0.90875 1.38789 1.06200 0.92153 1.24888 0.98513 0.94908 0.95419 1.69899 1.35037 1.37741 1.09335 0.86473 0.85044 0.78390 0.77333 1.20614 1.21110 1.19880 1.46486 1.14787 1.56172 1.18419 1.20286 0.82674 0.79198 0.89014 1.90659 1.51438 1.60040 1.40778 1.21572 0.97207 1.01000 0.97478 1.20145 0.96204 1.00066 0.91994 1.20959 0.96644 0.89092 0.95813 1.67617 1.16329 1.08086 1.23295 1.22667 0.97318 1.00481 0.89147 1.21949 0.99489 0.94231 1.00520 1.21682 1.03936 0.96245 0.97467 1.19987 0.97239 0.84723 0.94743 1.86200 1.74208 1.18625 1.42185 1.23124 0.96299 0.97764 0.89879 0.94132 0.93168 0.96020 0.88415 0.95174 0.92635 0.78090 0.89771 0.89432 0.89202 0.89094 0.82558 0.84722 0.84472 0.87771 0.92646 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.52 37.16 0.32 -2.80 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.06 11.29 55.43 0.63 -24.43 16 9 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -15.07 5.02 -54.93 -0.28 -15.35 16 14 C 0.50 10.15 6.40 -10.99 -0.07 10.08 16 15 O -0.55 -12.95 13.12 5.56 0.07 -12.88 16 16 C -0.13 -2.04 5.68 -27.88 -0.16 -2.20 16 17 C -0.05 -0.70 4.58 -27.88 -0.13 -0.83 16 18 C 0.11 1.58 6.05 -82.41 -0.50 1.08 16 19 N -0.44 -5.99 10.27 -9.35 -0.10 -6.09 16 20 C 0.06 0.62 11.18 -17.54 -0.20 0.42 16 21 C -0.14 -1.20 10.11 -39.46 -0.40 -1.60 16 22 C -0.17 -1.54 9.14 -39.14 -0.36 -1.89 16 23 C 0.08 0.97 6.67 -39.08 -0.26 0.70 16 24 O -0.30 -3.48 9.54 -19.45 -0.19 -3.67 16 25 C 0.02 0.17 9.83 101.05 0.99 1.17 16 26 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.39 7.19 8.54 -40.82 -0.35 6.84 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 36 H 0.09 1.45 7.47 -51.93 -0.39 1.07 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.14 0.88 6.45 -52.49 -0.34 0.54 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.32 7.69 -51.93 -0.40 -0.08 16 42 H 0.05 0.31 7.71 -51.93 -0.40 -0.09 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -32.24 345.82 -7.32 -39.56 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.20 Total: 7.10 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.45 Total: -5.31 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.25 Total: -45.87 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.11 Total: -16.55 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.24 -7.32 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175512579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.076 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds