Wall clock time and date at job start Tue Mar 31 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47346 * 180.02562 * 17 16 14 19 19 N 1.31841 * 119.65780 * 90.00217 * 18 17 16 20 20 C 1.31844 * 121.78137 * 179.97438 * 19 18 17 21 21 C 1.38257 * 120.88551 * 0.02562 * 20 19 18 22 22 C 1.38536 * 119.22019 * 359.97438 * 21 20 19 23 23 C 1.38705 * 119.65659 * 269.72745 * 18 17 16 24 24 O 1.35907 * 120.47309 * 359.97438 * 23 18 17 25 25 C 1.42904 * 116.99860 * 180.02562 * 24 23 18 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.09000 * 109.47444 * 300.00712 * 17 16 14 36 36 H 1.09000 * 109.46920 * 60.00019 * 17 16 14 37 37 H 1.07999 * 119.55642 * 179.97438 * 20 19 18 38 38 H 1.08003 * 120.38678 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.80770 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47029 * 180.02562 * 25 24 23 41 41 H 1.09006 * 109.46889 * 300.00085 * 25 24 23 42 42 H 1.09000 * 109.47314 * 60.00253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 6 -1.3828 3.8936 2.5214 18 6 -1.7815 4.5675 3.8091 19 7 -1.5295 5.8503 3.9792 20 6 -1.8604 6.4819 5.0883 21 6 -2.4893 5.8156 6.1237 22 6 -2.7729 4.4666 5.9865 23 6 -2.4149 3.8329 4.8006 24 8 -2.6781 2.5121 4.6181 25 6 -3.3338 1.8275 5.6875 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -1.4143 4.6181 1.7076 36 1 -2.0739 3.0781 2.3085 37 1 -1.6364 7.5335 5.1896 38 1 -2.7572 6.3410 7.0285 39 1 -3.2630 3.9209 6.7792 40 1 -3.4832 0.7833 5.4129 41 1 -2.7183 1.8822 6.5854 42 1 -4.2996 2.2947 5.8799 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175512579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:00 Heat of formation + Delta-G solvation = -75.532011 kcal Electronic energy + Delta-G solvation = -23203.264512 eV Core-core repulsion = 19761.407327 eV Total energy + Delta-G solvation = -3441.857185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.72295 -40.60591 -39.06395 -37.02101 -35.05549 -34.25921 -32.94050 -32.53064 -30.82539 -28.94299 -28.28432 -26.26897 -24.80092 -23.79415 -22.84148 -21.73940 -21.00310 -19.02214 -18.86422 -18.12339 -17.62866 -17.18287 -16.75379 -16.73046 -16.50030 -16.02906 -15.31037 -15.08451 -14.75484 -14.71624 -14.56840 -14.46114 -13.89451 -13.62501 -13.33004 -13.16632 -13.08173 -12.93991 -12.83210 -12.64832 -12.33974 -12.24459 -12.15944 -12.07216 -11.93711 -11.56330 -11.03045 -10.72155 -10.59267 -10.51158 -10.42952 -9.57651 -9.29362 -8.14548 -6.31954 0.14000 0.31875 1.44833 1.45837 1.56316 1.92288 2.29716 2.37594 2.63701 2.85241 3.14409 3.41248 3.66739 3.85772 3.97836 4.11391 4.25535 4.28216 4.36710 4.40398 4.43776 4.51451 4.59828 4.64078 4.73256 4.77298 4.80878 4.88488 5.09082 5.10852 5.17865 5.23237 5.28793 5.46996 5.55982 5.58524 5.66962 5.82364 5.96583 6.19549 6.29982 6.76629 7.04689 7.06564 7.35435 7.64826 8.90793 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.003268 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.691712 B = 8564.941591 C = 9123.726611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.708 5.708 14 C 0.500 3.500 15 O -0.587 6.587 16 C -0.113 4.113 17 C -0.036 4.036 18 C 0.082 3.918 19 N -0.476 5.476 20 C 0.049 3.951 21 C -0.126 4.126 22 C -0.163 4.163 23 C 0.073 3.927 24 O -0.327 6.327 25 C 0.015 3.985 26 H 0.044 0.956 27 H 0.024 0.976 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.181 0.819 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.973 6.701 22.335 26.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.357 5.357 14 C 0.287 3.713 15 O -0.469 6.469 16 C -0.153 4.153 17 C -0.075 4.075 18 C -0.056 4.056 19 N -0.186 5.186 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.189 4.189 23 C 0.025 3.975 24 O -0.240 6.240 25 C -0.079 4.079 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.198 0.802 38 H 0.193 0.807 39 H 0.187 0.813 40 H 0.130 0.870 41 H 0.090 0.910 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.049 6.893 20.665 24.894 hybrid contribution 0.613 -0.556 0.435 0.935 sum -11.436 6.337 21.100 24.822 Atomic orbital electron populations 1.21673 0.96949 0.99086 1.00291 1.21773 0.93779 0.99141 1.01202 1.18359 0.93567 0.89215 0.81519 0.98571 1.21600 0.91531 1.38869 1.06703 0.91161 1.25786 1.03366 0.94411 0.95000 1.70055 1.37041 1.38404 1.09849 0.85367 0.79093 0.78854 0.77138 1.19588 1.21241 1.18991 1.46284 1.15682 1.56204 1.17520 1.21097 0.81670 0.78344 0.90165 1.90644 1.52424 1.61220 1.42605 1.21461 0.97694 1.01284 0.94887 1.19902 0.95600 0.99081 0.92920 1.20579 0.99497 0.89782 0.95745 1.67506 1.17580 1.08247 1.25247 1.23201 0.97237 1.01672 0.88753 1.22399 0.97093 0.93955 1.01073 1.22085 1.03037 0.96725 0.97027 1.20024 0.97240 0.84994 0.95252 1.86161 1.74771 1.18732 1.44302 1.23412 0.97073 0.97949 0.89489 0.93660 0.95693 0.93573 0.91076 0.94085 0.92626 0.76303 0.87613 0.88105 0.91650 0.90622 0.80169 0.80731 0.81292 0.86976 0.90983 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.52 71.98 0.61 -5.10 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.92 16 3 C 0.28 14.66 2.24 44.24 0.10 14.76 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.24 16 5 C -0.55 -29.78 8.73 25.60 0.22 -29.56 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.37 11.29 21.45 0.24 -53.12 16 9 Si 0.97 42.84 29.54 68.60 2.03 44.87 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 13 N -0.71 -30.44 5.02 -446.10 -2.24 -32.68 16 14 C 0.50 20.69 6.40 87.66 0.56 21.25 16 15 O -0.59 -29.07 13.12 -3.03 -0.04 -29.11 16 16 C -0.11 -3.51 5.68 29.85 0.17 -3.34 16 17 C -0.04 -1.16 4.58 29.85 0.14 -1.02 16 18 C 0.08 2.25 6.05 42.67 0.26 2.51 16 19 N -0.48 -12.57 10.27 -183.50 -1.88 -14.46 16 20 C 0.05 0.88 11.18 84.70 0.95 1.83 16 21 C -0.13 -1.64 10.11 22.35 0.23 -1.41 16 22 C -0.16 -2.43 9.14 22.56 0.21 -2.23 16 23 C 0.07 1.63 6.67 22.60 0.15 1.78 16 24 O -0.33 -7.21 9.54 -92.50 -0.88 -8.09 16 25 C 0.02 0.18 9.83 113.37 1.11 1.29 16 26 H 0.04 2.03 5.64 -2.39 -0.01 2.02 16 27 H 0.02 1.24 7.85 -2.39 -0.02 1.23 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 4.02 5.95 -2.39 -0.01 4.00 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.40 14.74 8.54 -92.70 -0.79 13.94 16 33 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 36 H 0.08 2.56 7.47 -2.39 -0.02 2.55 16 37 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 39 H 0.17 1.36 6.45 -2.91 -0.02 1.34 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.07 0.59 7.69 -2.38 -0.02 0.58 16 42 H 0.07 0.59 7.71 -2.39 -0.02 0.57 16 Total: -1.00 -73.31 345.82 2.78 -70.53 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.23 Total: 25.99 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.32 Total: -3.93 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -3.88 Total: -100.26 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.92 Total: -37.21 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.31 2.78 -70.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175512579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.998 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds