Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 H 1.09002 * 109.46930 * 305.37760 * 3 2 1 5 5 C 1.50697 * 109.46875 * 185.37949 * 3 2 1 6 6 H 1.08008 * 119.99743 * 244.79954 * 5 3 2 7 7 C 1.37870 * 120.00504 * 64.80754 * 5 3 2 8 8 N 1.31519 * 119.99991 * 7.11794 * 7 5 3 9 9 Si 1.86800 * 120.00200 * 187.12569 * 7 5 3 10 10 H 1.48501 * 109.47095 * 94.98645 * 9 7 5 11 11 H 1.48505 * 109.47159 * 214.98553 * 9 7 5 12 12 H 1.48500 * 109.47193 * 334.98430 * 9 7 5 13 13 N 1.46496 * 109.46835 * 65.38056 * 3 2 1 14 14 C 1.34785 * 119.99834 * 274.99739 * 13 3 2 15 15 O 1.21621 * 119.99789 * 0.02562 * 14 13 3 16 16 C 1.47192 * 119.99849 * 179.97438 * 14 13 3 17 17 N 1.36425 * 126.26927 * 4.91015 * 16 14 13 18 18 H 0.97002 * 125.38854 * 0.03260 * 17 16 14 19 19 C 1.35655 * 109.21520 * 179.88981 * 17 16 14 20 20 C 1.50696 * 125.36480 * 180.11966 * 19 17 16 21 21 C 1.35050 * 109.27091 * 0.37779 * 19 17 16 22 22 C 1.50694 * 126.24238 * 179.79392 * 21 19 17 23 23 C 1.39516 * 126.26501 * 185.21717 * 16 14 13 24 24 C 1.47009 * 126.74017 * 359.94946 * 23 16 14 25 25 C 1.50702 * 120.00075 * 85.62194 * 24 23 16 26 26 O 1.21267 * 119.99466 * 265.62826 * 24 23 16 27 27 H 1.08998 * 109.47479 * 60.00228 * 1 2 3 28 28 H 1.09000 * 109.47203 * 299.99220 * 1 2 3 29 29 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47701 * 120.00274 * 2 1 3 31 31 H 1.09000 * 109.47203 * 240.00780 * 2 1 3 32 32 H 0.97000 * 120.00394 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00778 * 94.99789 * 13 3 2 34 34 H 1.09005 * 109.47139 * 270.30447 * 20 19 17 35 35 H 1.09003 * 109.47356 * 30.30051 * 20 19 17 36 36 H 1.09006 * 109.47292 * 150.30433 * 20 19 17 37 37 H 1.09000 * 109.47255 * 269.97401 * 22 21 19 38 38 H 1.08999 * 109.47231 * 29.97708 * 22 21 19 39 39 H 1.09000 * 109.47504 * 149.97806 * 22 21 19 40 40 H 1.08996 * 109.47191 * 4.98142 * 25 24 23 41 41 H 1.08998 * 109.47210 * 124.98548 * 25 24 23 42 42 H 1.09007 * 109.46660 * 244.97960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6001 1.9834 -0.8379 5 6 3.5410 1.4446 -0.1332 6 1 4.1543 1.8170 0.6742 7 6 4.1316 0.9714 -1.2856 8 7 3.3877 0.6494 -2.3213 9 14 5.9883 0.7873 -1.3760 10 1 6.3647 -0.6075 -1.0325 11 1 6.4503 1.1001 -2.7523 12 1 6.6259 1.7231 -0.4153 13 7 1.6602 2.0947 1.2556 14 6 0.4436 2.6614 1.3796 15 8 -0.3391 2.6308 0.4492 16 6 0.0618 3.3161 2.6414 17 7 0.8653 3.5060 3.7274 18 1 1.7925 3.2291 3.7955 19 6 0.1633 4.1462 4.6957 20 6 0.7009 4.5391 6.0476 21 6 -1.0949 4.3709 4.2594 22 6 -2.1965 5.0521 5.0296 23 6 -1.1899 3.8507 2.9480 24 6 -2.3749 3.8699 2.0782 25 6 -3.3036 2.6836 2.0437 26 8 -2.6050 4.8405 1.3885 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5137 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.8031 0.3160 -3.1320 33 1 2.2842 2.1187 1.9978 34 1 0.5364 3.7258 6.7545 35 1 1.7690 4.7417 5.9691 36 1 0.1861 5.4341 6.3973 37 1 -2.7569 4.3088 5.5966 38 1 -1.7638 5.7813 5.7145 39 1 -2.8659 5.5592 4.3346 40 1 -2.9868 1.9524 2.7874 41 1 -4.3194 3.0107 2.2654 42 1 -3.2762 2.2295 1.0531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184760790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -50.439957 kcal Electronic energy + Delta-G solvation = -23957.341529 eV Core-core repulsion = 20516.572417 eV Total energy + Delta-G solvation = -3440.769112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54358 -38.72771 -38.52519 -35.15280 -33.25151 -32.30370 -31.94399 -31.00902 -29.75040 -27.78953 -27.36626 -25.70598 -23.50981 -22.83783 -20.90149 -19.75787 -19.13314 -18.57685 -18.13520 -16.37953 -15.60848 -15.45927 -15.34128 -14.87929 -14.53886 -14.43602 -14.30916 -14.08074 -13.65731 -13.09371 -12.97095 -12.78836 -12.70446 -12.53037 -12.33835 -12.09266 -12.01665 -11.84534 -11.54948 -11.51113 -11.39216 -11.07602 -10.86524 -10.42175 -10.29182 -9.77775 -9.52728 -9.32114 -9.17616 -8.73658 -8.57019 -8.12917 -7.85859 -6.20854 -4.28292 1.58069 2.24403 2.51370 3.04763 3.19448 3.26931 3.28410 3.80798 3.89026 4.30751 4.39637 4.78444 4.97245 5.12428 5.17266 5.20012 5.30361 5.32350 5.38131 5.60011 5.64674 5.68044 5.73657 5.91061 5.98324 6.06835 6.24620 6.29345 6.34088 6.53664 6.71441 6.82421 6.92811 7.10451 7.21597 7.29310 7.34220 7.53010 7.62844 7.76040 7.81838 7.99463 8.49314 8.68357 8.93090 9.37922 10.86968 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004523 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.778674 B = 6189.577213 C = 7131.361098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.059 0.941 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.568 3.432 15 O -0.525 6.525 16 C 0.008 3.992 17 N -0.524 5.524 18 H 0.419 0.581 19 C 0.033 3.967 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.080 4.080 23 C -0.166 4.166 24 C 0.445 3.555 25 C -0.190 4.190 26 O -0.455 6.455 27 H 0.052 0.948 28 H 0.040 0.960 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.266 0.734 33 H 0.382 0.618 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 3.582 17.165 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.076 0.924 5 C -0.578 4.578 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.514 5.514 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.353 3.647 15 O -0.402 6.402 16 C -0.109 4.109 17 N -0.120 5.120 18 H 0.257 0.743 19 C -0.082 4.082 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.176 4.176 24 C 0.320 3.680 25 C -0.247 4.247 26 O -0.328 6.328 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.213 0.787 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.361 3.927 15.857 17.918 hybrid contribution 1.996 -0.442 0.296 2.066 sum -5.364 3.485 16.153 17.374 Atomic orbital electron populations 1.21856 0.97984 0.98326 1.01533 1.21856 0.93038 0.99612 1.01417 1.18878 0.94632 0.89092 0.80559 0.92364 1.21148 0.90413 1.43959 1.02288 0.92194 1.24877 0.98542 0.94979 0.95017 1.69968 1.35450 1.42746 1.03257 0.86475 0.84864 0.78428 0.77578 1.20508 1.21023 1.19890 1.46425 1.13837 1.56027 1.18730 1.17116 0.83368 0.79195 0.85068 1.90822 1.51096 1.59732 1.38541 1.20886 0.91145 1.08851 0.89978 1.41625 1.13079 1.45282 1.12029 0.74289 1.20087 0.92231 1.03223 0.92674 1.20374 1.01087 1.02237 0.90627 1.19070 0.94957 1.06923 0.94006 1.20175 0.95620 0.99133 0.98846 1.20175 0.94539 1.06266 0.96599 1.21650 0.82873 0.86933 0.76553 1.22147 0.99440 0.97960 1.05200 1.90516 1.71909 1.35267 1.35059 0.92857 0.94063 0.95616 0.94784 0.89743 0.92450 0.78664 0.90709 0.91493 0.89901 0.91669 0.91694 0.91958 0.90408 0.89532 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.68 16 2 C -0.12 -2.80 5.49 -26.73 -0.15 -2.95 16 3 C 0.27 6.60 2.11 -69.08 -0.15 6.45 16 4 H 0.06 1.68 7.55 -51.93 -0.39 1.29 16 5 C -0.54 -13.87 8.67 -34.44 -0.30 -14.17 16 6 H 0.06 1.46 7.73 -52.48 -0.41 1.06 16 7 C 0.07 1.85 5.19 -17.82 -0.09 1.76 16 8 N -0.88 -24.40 12.00 55.43 0.67 -23.73 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.18 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -14.14 5.02 -56.08 -0.28 -14.42 16 14 C 0.57 11.52 6.39 -12.62 -0.08 11.44 16 15 O -0.52 -12.36 12.94 5.26 0.07 -12.29 16 16 C 0.01 0.14 7.10 -81.71 -0.58 -0.44 16 17 N -0.52 -6.63 5.92 -5.50 -0.03 -6.67 16 18 H 0.42 4.20 8.19 -40.82 -0.33 3.86 16 19 C 0.03 0.38 7.10 -82.04 -0.58 -0.20 16 20 C -0.09 -0.61 10.19 36.00 0.37 -0.25 16 21 C -0.14 -1.88 6.15 -104.55 -0.64 -2.53 16 22 C -0.08 -0.80 9.98 36.00 0.36 -0.44 16 23 C -0.17 -2.73 5.77 -104.66 -0.60 -3.33 16 24 C 0.45 7.67 5.59 -30.75 -0.17 7.50 16 25 C -0.19 -2.56 10.32 36.01 0.37 -2.19 16 26 O -0.45 -9.32 17.86 5.57 0.10 -9.22 16 27 H 0.05 1.23 7.87 -51.93 -0.41 0.82 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 2.18 6.64 -51.93 -0.34 1.83 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.38 6.47 7.67 -40.82 -0.31 6.15 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.50 7.07 -51.93 -0.37 0.14 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.51 7.08 -51.93 -0.37 0.15 16 39 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 40 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 349.96 15.07 5.27 5.27 Total: -1.00 -32.72 349.96 -7.31 -40.03 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.15 Total: 7.86 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.93 Total: -2.02 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.35 Total: -44.82 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.17 Total: -21.51 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.72 -7.31 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184760790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.410 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds