Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 H 1.09002 * 109.46930 * 305.37760 * 3 2 1 5 5 C 1.50697 * 109.46875 * 185.37949 * 3 2 1 6 6 H 1.08008 * 119.99743 * 244.79954 * 5 3 2 7 7 C 1.37870 * 120.00504 * 64.80754 * 5 3 2 8 8 N 1.31519 * 119.99991 * 7.11794 * 7 5 3 9 9 Si 1.86800 * 120.00200 * 187.12569 * 7 5 3 10 10 H 1.48501 * 109.47095 * 94.98645 * 9 7 5 11 11 H 1.48505 * 109.47159 * 214.98553 * 9 7 5 12 12 H 1.48500 * 109.47193 * 334.98430 * 9 7 5 13 13 N 1.46496 * 109.46835 * 65.38056 * 3 2 1 14 14 C 1.34785 * 119.99834 * 274.99739 * 13 3 2 15 15 O 1.21621 * 119.99789 * 0.02562 * 14 13 3 16 16 C 1.47192 * 119.99849 * 179.97438 * 14 13 3 17 17 N 1.36425 * 126.26927 * 4.91015 * 16 14 13 18 18 H 0.97002 * 125.38854 * 0.03260 * 17 16 14 19 19 C 1.35655 * 109.21520 * 179.88981 * 17 16 14 20 20 C 1.50696 * 125.36480 * 180.11966 * 19 17 16 21 21 C 1.35050 * 109.27091 * 0.37779 * 19 17 16 22 22 C 1.50694 * 126.24238 * 179.79392 * 21 19 17 23 23 C 1.39516 * 126.26501 * 185.21717 * 16 14 13 24 24 C 1.47009 * 126.74017 * 359.94946 * 23 16 14 25 25 C 1.50702 * 120.00075 * 85.62194 * 24 23 16 26 26 O 1.21267 * 119.99466 * 265.62826 * 24 23 16 27 27 H 1.08998 * 109.47479 * 60.00228 * 1 2 3 28 28 H 1.09000 * 109.47203 * 299.99220 * 1 2 3 29 29 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47701 * 120.00274 * 2 1 3 31 31 H 1.09000 * 109.47203 * 240.00780 * 2 1 3 32 32 H 0.97000 * 120.00394 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00778 * 94.99789 * 13 3 2 34 34 H 1.09005 * 109.47139 * 270.30447 * 20 19 17 35 35 H 1.09003 * 109.47356 * 30.30051 * 20 19 17 36 36 H 1.09006 * 109.47292 * 150.30433 * 20 19 17 37 37 H 1.09000 * 109.47255 * 269.97401 * 22 21 19 38 38 H 1.08999 * 109.47231 * 29.97708 * 22 21 19 39 39 H 1.09000 * 109.47504 * 149.97806 * 22 21 19 40 40 H 1.08996 * 109.47191 * 4.98142 * 25 24 23 41 41 H 1.08998 * 109.47210 * 124.98548 * 25 24 23 42 42 H 1.09007 * 109.46660 * 244.97960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6001 1.9834 -0.8379 5 6 3.5410 1.4446 -0.1332 6 1 4.1543 1.8170 0.6742 7 6 4.1316 0.9714 -1.2856 8 7 3.3877 0.6494 -2.3213 9 14 5.9883 0.7873 -1.3760 10 1 6.3647 -0.6075 -1.0325 11 1 6.4503 1.1001 -2.7523 12 1 6.6259 1.7231 -0.4153 13 7 1.6602 2.0947 1.2556 14 6 0.4436 2.6614 1.3796 15 8 -0.3391 2.6308 0.4492 16 6 0.0618 3.3161 2.6414 17 7 0.8653 3.5060 3.7274 18 1 1.7925 3.2291 3.7955 19 6 0.1633 4.1462 4.6957 20 6 0.7009 4.5391 6.0476 21 6 -1.0949 4.3709 4.2594 22 6 -2.1965 5.0521 5.0296 23 6 -1.1899 3.8507 2.9480 24 6 -2.3749 3.8699 2.0782 25 6 -3.3036 2.6836 2.0437 26 8 -2.6050 4.8405 1.3885 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5137 0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.8031 0.3160 -3.1320 33 1 2.2842 2.1187 1.9978 34 1 0.5364 3.7258 6.7545 35 1 1.7690 4.7417 5.9691 36 1 0.1861 5.4341 6.3973 37 1 -2.7569 4.3088 5.5966 38 1 -1.7638 5.7813 5.7145 39 1 -2.8659 5.5592 4.3346 40 1 -2.9868 1.9524 2.7874 41 1 -4.3194 3.0107 2.2654 42 1 -3.2762 2.2295 1.0531 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184760790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -72.701998 kcal Electronic energy + Delta-G solvation = -23958.306884 eV Core-core repulsion = 20516.572417 eV Total energy + Delta-G solvation = -3441.734467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.66845 -40.35464 -39.89712 -36.99011 -34.58391 -33.92414 -33.06496 -32.66736 -30.81133 -29.20241 -28.67184 -26.93574 -25.06436 -24.37479 -22.42186 -21.45439 -20.36003 -19.87635 -19.46267 -18.11946 -17.28457 -16.82333 -16.72422 -16.21725 -16.16922 -15.98840 -15.50151 -15.30881 -15.02998 -14.62393 -14.13433 -14.01976 -13.66601 -13.52934 -13.46769 -13.29321 -13.23273 -13.16564 -12.98695 -12.95228 -12.85439 -12.66835 -12.49827 -12.21870 -12.11846 -11.66056 -11.13199 -11.00999 -10.85814 -10.58059 -9.86749 -9.77970 -9.00767 -8.21944 -6.36998 0.31116 0.92592 1.43114 1.43226 1.52452 1.53924 1.98739 2.28732 2.30806 2.50600 3.10119 3.25203 3.89010 3.96158 4.13197 4.17626 4.37491 4.44211 4.50103 4.51874 4.60735 4.68032 4.69572 4.81926 4.90451 4.98237 5.02644 5.07077 5.14058 5.16839 5.21338 5.23236 5.38259 5.43535 5.54732 5.69119 5.71370 5.76072 5.89101 6.02480 6.42804 6.50667 6.69615 6.83478 7.25393 7.40651 8.86486 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019295 B = 0.004523 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.778674 B = 6189.577213 C = 7131.361098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.567 3.433 15 O -0.569 6.569 16 C -0.029 4.029 17 N -0.512 5.512 18 H 0.431 0.569 19 C 0.063 3.937 20 C -0.086 4.086 21 C -0.161 4.161 22 C -0.078 4.078 23 C -0.180 4.180 24 C 0.438 3.562 25 C -0.185 4.185 26 O -0.501 6.501 27 H 0.024 0.976 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.265 0.735 33 H 0.399 0.601 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.818 3.668 21.099 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.186 1.186 13 N -0.346 5.346 14 C 0.355 3.645 15 O -0.449 6.449 16 C -0.145 4.145 17 N -0.108 5.108 18 H 0.272 0.728 19 C -0.054 4.054 20 C -0.143 4.143 21 C -0.166 4.166 22 C -0.135 4.135 23 C -0.190 4.190 24 C 0.317 3.683 25 C -0.242 4.242 26 O -0.378 6.378 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.285 4.001 19.849 21.201 hybrid contribution 1.620 -0.396 -0.831 1.863 sum -4.665 3.604 19.019 19.911 Atomic orbital electron populations 1.21689 0.96693 0.99501 1.00397 1.21696 0.94099 0.98644 1.00683 1.18451 0.94059 0.89262 0.80711 0.98021 1.21522 0.91081 1.43580 1.02699 0.90841 1.25773 1.03264 0.94617 0.94613 1.70125 1.37505 1.43820 1.03883 0.85375 0.79060 0.78806 0.77347 1.19646 1.21533 1.18583 1.46092 1.14529 1.56048 1.17899 1.17528 0.82581 0.78479 0.85943 1.90794 1.52236 1.61320 1.40538 1.20157 0.92364 1.11921 0.90077 1.41608 1.13427 1.44766 1.11037 0.72820 1.20867 0.91315 0.99804 0.93455 1.20612 1.02101 1.03707 0.87885 1.19519 0.96777 1.07371 0.92947 1.20257 0.94696 0.99901 0.98690 1.20443 0.94068 1.06460 0.98072 1.22358 0.83492 0.87055 0.75435 1.22159 1.00309 0.96800 1.04951 1.90489 1.73221 1.37118 1.36947 0.95666 0.93540 0.93076 0.93138 0.92549 0.92570 0.76655 0.88490 0.89924 0.88121 0.89706 0.89085 0.93576 0.88654 0.86669 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.53 8.52 71.98 0.61 -4.92 16 2 C -0.11 -5.36 5.49 30.60 0.17 -5.19 16 3 C 0.28 14.12 2.11 44.25 0.09 14.21 16 4 H 0.00 0.11 7.55 -2.39 -0.02 0.10 16 5 C -0.55 -28.57 8.67 25.60 0.22 -28.35 16 6 H 0.07 3.52 7.73 -2.91 -0.02 3.50 16 7 C 0.02 0.96 5.19 84.65 0.44 1.40 16 8 N -0.92 -52.69 12.00 21.45 0.26 -52.43 16 9 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 13 N -0.70 -28.55 5.02 -449.59 -2.26 -30.80 16 14 C 0.57 23.73 6.39 86.59 0.55 24.29 16 15 O -0.57 -28.39 12.94 -4.10 -0.05 -28.45 16 16 C -0.03 -0.96 7.10 41.09 0.29 -0.67 16 17 N -0.51 -11.82 5.92 -171.31 -1.01 -12.84 16 18 H 0.43 7.51 8.19 -92.71 -0.76 6.75 16 19 C 0.06 1.21 7.10 41.23 0.29 1.50 16 20 C -0.09 -0.77 10.19 71.23 0.73 -0.05 16 21 C -0.16 -3.84 6.15 -19.82 -0.12 -3.97 16 22 C -0.08 -1.33 9.98 71.23 0.71 -0.62 16 23 C -0.18 -5.85 5.77 -19.89 -0.11 -5.96 16 24 C 0.44 15.48 5.59 27.99 0.16 15.64 16 25 C -0.19 -4.97 10.32 71.24 0.73 -4.24 16 26 O -0.50 -21.52 17.86 -2.99 -0.05 -21.58 16 27 H 0.02 1.21 7.87 -2.39 -0.02 1.19 16 28 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 3.01 6.64 -2.39 -0.02 3.00 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.70 16 33 H 0.40 13.27 7.67 -92.71 -0.71 12.56 16 34 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.65 7.07 -2.38 -0.02 0.63 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.05 7.08 -2.39 -0.02 1.03 16 39 H 0.05 0.93 8.04 -2.39 -0.02 0.92 16 40 H 0.09 2.17 7.99 -2.39 -0.02 2.16 16 41 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -76.23 349.96 3.25 -72.98 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -0.42 Total: 26.60 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 4.77 Total: 3.08 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -3.01 Total: -96.07 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.11 Total: -50.03 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -76.23 3.25 -72.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184760790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -76.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds