Wall clock time and date at job start Tue Mar 31 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47262 * 185.40324 * 3 2 1 6 6 H 1.07992 * 120.00246 * 244.73837 * 5 3 2 7 7 C 1.37885 * 119.99776 * 64.73348 * 5 3 2 8 8 N 1.31513 * 119.99768 * 187.26381 * 7 5 3 9 9 Si 1.86799 * 120.00162 * 7.26083 * 7 5 3 10 10 H 1.48494 * 109.47195 * 270.00388 * 9 7 5 11 11 H 1.48503 * 109.46898 * 30.00130 * 9 7 5 12 12 H 1.48497 * 109.47106 * 149.99517 * 9 7 5 13 13 N 1.46504 * 109.47187 * 65.40277 * 3 2 1 14 14 C 1.34771 * 120.00192 * 275.00001 * 13 3 2 15 15 O 1.21597 * 120.00097 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00366 * 180.02562 * 14 13 3 17 17 C 1.46503 * 120.00376 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47299 * 180.02562 * 17 16 14 19 19 C 1.38263 * 119.93795 * 269.72765 * 18 17 16 20 20 C 1.38145 * 120.05120 * 179.72598 * 19 18 17 21 21 C 1.38734 * 119.94407 * 0.56530 * 20 19 18 22 22 O 1.35901 * 120.05554 * 179.68299 * 21 20 19 23 23 C 1.42902 * 117.00273 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88816 * 359.70375 * 21 20 19 25 25 C 1.38148 * 119.94174 * 359.97438 * 24 21 20 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.97003 * 120.00316 * 354.94376 * 8 7 5 32 32 H 0.96998 * 119.99835 * 94.99759 * 13 3 2 33 33 H 0.96998 * 119.99661 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.46428 * 299.99598 * 17 16 14 35 35 H 1.08995 * 109.46990 * 59.99495 * 17 16 14 36 36 H 1.07992 * 119.97755 * 359.97310 * 19 18 17 37 37 H 1.08006 * 120.03070 * 180.24394 * 20 19 18 38 38 H 1.08997 * 109.46778 * 300.00240 * 23 22 21 39 39 H 1.09005 * 109.46761 * 60.00015 * 23 22 21 40 40 H 1.08993 * 109.47437 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.02715 * 179.97438 * 24 21 20 42 42 H 1.07998 * 119.96930 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1338 6 1 4.1545 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3492 9 14 3.0742 0.5146 -2.7574 10 1 2.6851 -0.9154 -2.6638 11 1 1.8533 1.3599 -2.7704 12 1 3.8438 0.7375 -4.0077 13 7 1.6608 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3383 2.6316 0.4503 16 7 0.0956 3.2615 2.5356 17 6 -1.2270 3.8769 2.6713 18 6 -1.3641 4.4747 4.0478 19 6 -1.8732 3.7129 5.0833 20 6 -1.9947 4.2567 6.3474 21 6 -1.6164 5.5720 6.5747 22 8 -1.7410 6.1112 7.8159 23 6 -2.2686 5.2662 8.8405 24 6 -1.1111 6.3359 5.5328 25 6 -0.9854 5.7853 4.2720 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9925 1.1425 -0.6138 32 1 2.2852 2.1184 1.9978 33 1 0.7200 3.2854 3.2775 34 1 -1.3415 4.6605 1.9222 35 1 -1.9969 3.1194 2.5252 36 1 -2.1724 2.6907 4.9047 37 1 -2.3888 3.6601 7.1569 38 1 -3.2701 4.9389 8.5614 39 1 -1.6229 4.3965 8.9624 40 1 -2.3147 5.8185 9.7790 41 1 -0.8162 7.3602 5.7071 42 1 -0.5924 6.3798 3.4604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185568046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:47 Heat of formation + Delta-G solvation = -48.999551 kcal Electronic energy + Delta-G solvation = -22812.510269 eV Core-core repulsion = 19371.803617 eV Total energy + Delta-G solvation = -3440.706652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48395 -39.44509 -37.97032 -35.57848 -34.12795 -32.39428 -31.61658 -31.35481 -30.32432 -27.96929 -27.11938 -25.24835 -22.93181 -22.28433 -21.49229 -20.80444 -19.60693 -18.52524 -18.37214 -17.10544 -16.58906 -16.11107 -15.94358 -15.33753 -15.14352 -14.68180 -14.29396 -14.11648 -13.80956 -13.60499 -13.19325 -12.96980 -12.90102 -12.55055 -12.34958 -12.27619 -12.06800 -11.70680 -11.60051 -11.37716 -11.08904 -10.88115 -10.64617 -10.41403 -9.76672 -9.67726 -9.44482 -9.28321 -8.85369 -8.69783 -8.47254 -8.44161 -7.92685 -6.52094 -4.19020 1.04056 1.08026 2.91760 3.22693 3.39462 3.49335 3.63676 3.70788 3.89711 4.44704 4.46709 4.57325 4.62687 4.72640 4.75529 5.03465 5.06137 5.10080 5.11276 5.23769 5.34197 5.55771 5.76051 5.81246 5.97301 6.04563 6.10674 6.13609 6.30323 6.40959 6.45610 6.72978 6.78812 6.84189 6.96384 7.04678 7.09602 7.28188 7.49419 7.61393 7.88297 8.27859 8.75972 8.83348 9.32108 9.52051 10.88494 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.002862 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.213152 B = 9782.109273 C =10043.585972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.258 3.742 4 H 0.048 0.952 5 C -0.607 4.607 6 H 0.061 0.939 7 C 0.035 3.965 8 N -0.907 5.907 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.288 1.288 13 N -0.719 5.719 14 C 0.695 3.305 15 O -0.597 6.597 16 N -0.754 5.754 17 C 0.187 3.813 18 C -0.139 4.139 19 C -0.060 4.060 20 C -0.211 4.211 21 C 0.129 3.871 22 O -0.319 6.319 23 C 0.027 3.973 24 C -0.154 4.154 25 C -0.060 4.060 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.387 0.613 33 H 0.392 0.608 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 7.760 18.385 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.154 3.846 4 H 0.066 0.934 5 C -0.646 4.646 6 H 0.079 0.921 7 C -0.171 4.171 8 N -0.540 5.540 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.215 1.215 13 N -0.371 5.371 14 C 0.395 3.605 15 O -0.476 6.476 16 N -0.412 5.412 17 C 0.063 3.937 18 C -0.139 4.139 19 C -0.078 4.078 20 C -0.230 4.230 21 C 0.084 3.916 22 O -0.232 6.232 23 C -0.068 4.068 24 C -0.173 4.173 25 C -0.078 4.078 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.220 0.780 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.078 7.267 16.014 23.827 hybrid contribution 0.512 0.365 2.560 2.636 sum -15.566 7.632 18.574 25.407 Atomic orbital electron populations 1.21864 0.97117 0.98644 1.02295 1.22265 0.94106 1.00124 1.01123 1.19100 0.95467 0.88148 0.81868 0.93443 1.22187 0.89860 1.47857 1.04663 0.92109 1.25702 0.97489 0.93641 1.00230 1.70837 1.04425 1.42727 1.36051 0.83944 0.75365 0.77191 0.75728 1.20736 1.19765 1.21480 1.45480 1.13680 1.59333 1.18568 1.16110 0.83215 0.78621 0.82531 1.90877 1.51961 1.65578 1.39173 1.45247 1.17454 1.62747 1.15713 1.19834 0.84925 0.96975 0.92009 1.19902 1.03467 0.94726 0.95834 1.20922 0.95964 0.99475 0.91476 1.21233 1.07925 0.95017 0.98801 1.19096 0.95700 0.92020 0.84822 1.86071 1.79766 1.40882 1.16508 1.23064 0.98356 0.95533 0.89854 1.20446 1.04842 1.00709 0.91275 1.20973 0.96224 0.94527 0.96096 0.93026 0.92930 0.95273 0.92379 0.92912 0.92216 0.78034 0.77509 0.91144 0.91262 0.85451 0.85411 0.92593 0.92546 0.88234 0.85072 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.52 37.16 0.32 -2.61 16 2 C -0.14 -3.11 5.20 -26.73 -0.14 -3.25 16 3 C 0.26 6.27 1.81 -69.08 -0.13 6.15 16 4 H 0.05 1.28 6.07 -51.93 -0.32 0.96 16 5 C -0.61 -16.62 9.09 -34.44 -0.31 -16.93 16 6 H 0.06 1.74 7.95 -52.49 -0.42 1.32 16 7 C 0.03 0.99 5.42 -17.82 -0.10 0.90 16 8 N -0.91 -27.40 13.70 55.43 0.76 -26.64 16 9 Si 1.05 25.80 25.39 -169.99 -4.32 21.48 16 10 H -0.28 -6.53 6.73 56.52 0.38 -6.15 16 11 H -0.27 -6.51 6.38 56.52 0.36 -6.15 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 N -0.72 -14.74 5.03 -59.81 -0.30 -15.04 16 14 C 0.70 13.47 7.15 -86.93 -0.62 12.85 16 15 O -0.60 -13.54 13.48 5.28 0.07 -13.47 16 16 N -0.75 -10.93 5.55 -66.41 -0.37 -11.30 16 17 C 0.19 2.36 5.80 -5.19 -0.03 2.33 16 18 C -0.14 -1.45 5.25 -104.60 -0.55 -2.00 16 19 C -0.06 -0.57 9.69 -39.61 -0.38 -0.96 16 20 C -0.21 -1.90 9.04 -39.43 -0.36 -2.26 16 21 C 0.13 1.28 6.69 -39.22 -0.26 1.01 16 22 O -0.32 -2.97 10.50 -19.43 -0.20 -3.18 16 23 C 0.03 0.15 9.81 101.05 0.99 1.14 16 24 C -0.15 -1.51 9.99 -39.43 -0.39 -1.90 16 25 C -0.06 -0.59 9.69 -39.61 -0.38 -0.97 16 26 H 0.05 1.06 5.64 -51.93 -0.29 0.77 16 27 H 0.05 1.14 7.87 -51.93 -0.41 0.73 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.36 4.43 -51.93 -0.23 1.13 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.27 8.00 8.72 -40.82 -0.36 7.64 16 32 H 0.39 7.12 8.54 -40.82 -0.35 6.77 16 33 H 0.39 4.87 8.48 -40.82 -0.35 4.52 16 34 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 0.88 6.30 -52.48 -0.33 0.55 16 38 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 39 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 40 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 341.10 15.07 5.14 5.14 Total: -1.00 -32.82 341.10 -7.64 -40.46 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.07 Total: 9.05 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.35 Total: -6.51 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.09 Total: -52.98 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.13 Total: -16.64 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -4.32 Total: 21.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.82 -7.64 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185568046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.543 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds