Wall clock time and date at job start Tue Mar 31 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47262 * 185.40324 * 3 2 1 6 6 H 1.07992 * 120.00246 * 244.73837 * 5 3 2 7 7 C 1.37885 * 119.99776 * 64.73348 * 5 3 2 8 8 N 1.31513 * 119.99768 * 187.26381 * 7 5 3 9 9 Si 1.86799 * 120.00162 * 7.26083 * 7 5 3 10 10 H 1.48494 * 109.47195 * 270.00388 * 9 7 5 11 11 H 1.48503 * 109.46898 * 30.00130 * 9 7 5 12 12 H 1.48497 * 109.47106 * 149.99517 * 9 7 5 13 13 N 1.46504 * 109.47187 * 65.40277 * 3 2 1 14 14 C 1.34771 * 120.00192 * 275.00001 * 13 3 2 15 15 O 1.21597 * 120.00097 * 359.97438 * 14 13 3 16 16 N 1.34773 * 120.00366 * 180.02562 * 14 13 3 17 17 C 1.46503 * 120.00376 * 180.02562 * 16 14 13 18 18 C 1.50703 * 109.47299 * 180.02562 * 17 16 14 19 19 C 1.38263 * 119.93795 * 269.72765 * 18 17 16 20 20 C 1.38145 * 120.05120 * 179.72598 * 19 18 17 21 21 C 1.38734 * 119.94407 * 0.56530 * 20 19 18 22 22 O 1.35901 * 120.05554 * 179.68299 * 21 20 19 23 23 C 1.42902 * 117.00273 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.88816 * 359.70375 * 21 20 19 25 25 C 1.38148 * 119.94174 * 359.97438 * 24 21 20 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 28 28 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 30 30 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 31 31 H 0.97003 * 120.00316 * 354.94376 * 8 7 5 32 32 H 0.96998 * 119.99835 * 94.99759 * 13 3 2 33 33 H 0.96998 * 119.99661 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.46428 * 299.99598 * 17 16 14 35 35 H 1.08995 * 109.46990 * 59.99495 * 17 16 14 36 36 H 1.07992 * 119.97755 * 359.97310 * 19 18 17 37 37 H 1.08006 * 120.03070 * 180.24394 * 20 19 18 38 38 H 1.08997 * 109.46778 * 300.00240 * 23 22 21 39 39 H 1.09005 * 109.46761 * 60.00015 * 23 22 21 40 40 H 1.08993 * 109.47437 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.02715 * 179.97438 * 24 21 20 42 42 H 1.07998 * 119.96930 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1338 6 1 4.1545 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3492 9 14 3.0742 0.5146 -2.7574 10 1 2.6851 -0.9154 -2.6638 11 1 1.8533 1.3599 -2.7704 12 1 3.8438 0.7375 -4.0077 13 7 1.6608 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3383 2.6316 0.4503 16 7 0.0956 3.2615 2.5356 17 6 -1.2270 3.8769 2.6713 18 6 -1.3641 4.4747 4.0478 19 6 -1.8732 3.7129 5.0833 20 6 -1.9947 4.2567 6.3474 21 6 -1.6164 5.5720 6.5747 22 8 -1.7410 6.1112 7.8159 23 6 -2.2686 5.2662 8.8405 24 6 -1.1111 6.3359 5.5328 25 6 -0.9854 5.7853 4.2720 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.9925 1.1425 -0.6138 32 1 2.2852 2.1184 1.9978 33 1 0.7200 3.2854 3.2775 34 1 -1.3415 4.6605 1.9222 35 1 -1.9969 3.1194 2.5252 36 1 -2.1724 2.6907 4.9047 37 1 -2.3888 3.6601 7.1569 38 1 -3.2701 4.9389 8.5614 39 1 -1.6229 4.3965 8.9624 40 1 -2.3147 5.8185 9.7790 41 1 -0.8162 7.3602 5.7071 42 1 -0.5924 6.3798 3.4604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185568046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:46 Heat of formation + Delta-G solvation = -72.415575 kcal Electronic energy + Delta-G solvation = -22813.525664 eV Core-core repulsion = 19371.803617 eV Total energy + Delta-G solvation = -3441.722047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29495 -40.85159 -38.78034 -37.25801 -35.48877 -34.43345 -33.17016 -32.10757 -31.38758 -29.14724 -28.36595 -26.27763 -24.21087 -23.64073 -22.63558 -22.07952 -21.35215 -20.20987 -19.16513 -18.84082 -17.48649 -17.32503 -16.69107 -16.61774 -16.34522 -15.95824 -15.48087 -15.20259 -15.00120 -14.65096 -14.54915 -14.45590 -14.31690 -14.17086 -13.76289 -13.53818 -13.28209 -12.81581 -12.70937 -12.50845 -12.42838 -12.26143 -12.00436 -11.76327 -11.68365 -11.47893 -11.12216 -10.91191 -10.63824 -10.12404 -9.99802 -9.57740 -9.19593 -8.76722 -6.44855 0.26723 0.35621 1.42974 1.52915 1.71105 1.99514 2.34286 2.35193 2.41657 2.78506 3.04812 3.60332 3.73157 3.80550 3.93139 4.20491 4.33939 4.37812 4.39216 4.40828 4.42218 4.53991 4.59496 4.71045 4.75736 4.77786 4.90223 5.06141 5.09769 5.21386 5.22518 5.32149 5.34491 5.52420 5.62017 5.62502 5.64600 5.73006 5.75811 6.01560 6.26485 6.40762 6.54928 7.30084 7.31376 7.78787 8.62474 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031516 B = 0.002862 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.213152 B = 9782.109273 C =10043.585972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 C 0.265 3.735 4 H 0.023 0.977 5 C -0.603 4.603 6 H 0.039 0.961 7 C -0.010 4.010 8 N -0.936 5.936 9 Si 1.080 2.920 10 H -0.257 1.257 11 H -0.265 1.265 12 H -0.287 1.287 13 N -0.721 5.721 14 C 0.696 3.304 15 O -0.629 6.629 16 N -0.735 5.735 17 C 0.190 3.810 18 C -0.146 4.146 19 C -0.061 4.061 20 C -0.211 4.211 21 C 0.123 3.877 22 O -0.335 6.335 23 C 0.017 3.983 24 C -0.165 4.165 25 C -0.062 4.062 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.257 0.743 32 H 0.397 0.603 33 H 0.404 0.596 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.118 0.882 41 H 0.139 0.861 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.296 7.359 19.830 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 C 0.159 3.841 4 H 0.041 0.959 5 C -0.641 4.641 6 H 0.057 0.943 7 C -0.210 4.210 8 N -0.572 5.572 9 Si 0.903 3.097 10 H -0.182 1.182 11 H -0.190 1.190 12 H -0.214 1.214 13 N -0.374 5.374 14 C 0.396 3.604 15 O -0.511 6.511 16 N -0.392 5.392 17 C 0.067 3.933 18 C -0.147 4.147 19 C -0.079 4.079 20 C -0.229 4.229 21 C 0.077 3.923 22 O -0.249 6.249 23 C -0.077 4.077 24 C -0.184 4.184 25 C -0.081 4.081 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.231 0.769 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.136 0.864 41 H 0.157 0.843 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.903 6.885 17.538 25.990 hybrid contribution 1.052 0.594 2.290 2.589 sum -16.851 7.479 19.828 27.075 Atomic orbital electron populations 1.21728 0.95271 1.00228 1.01537 1.22165 0.95665 0.98457 1.01071 1.18752 0.93098 0.89438 0.82802 0.95878 1.22376 0.91638 1.46369 1.03713 0.94253 1.26847 0.97695 0.93667 1.02784 1.70937 1.05364 1.44916 1.35995 0.83548 0.74372 0.78559 0.73217 1.18175 1.19035 1.21362 1.45219 1.14634 1.59758 1.17760 1.16165 0.82384 0.78560 0.83325 1.90856 1.52721 1.66780 1.40711 1.45117 1.18431 1.61194 1.14430 1.19870 0.83537 0.96595 0.93312 1.19701 1.05017 0.95086 0.94898 1.21075 0.95492 0.99928 0.91442 1.21453 1.07410 0.94912 0.99158 1.19294 0.95370 0.92395 0.85218 1.86056 1.79942 1.42150 1.16762 1.23352 0.98888 0.95856 0.89583 1.20617 1.05101 1.01318 0.91344 1.21055 0.96111 0.94447 0.96466 0.93199 0.94277 0.92440 0.93084 0.92289 0.93386 0.76887 0.76045 0.91876 0.91398 0.84351 0.83237 0.91561 0.91765 0.86399 0.84266 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.52 71.98 0.61 -4.49 16 2 C -0.13 -5.89 5.20 30.59 0.16 -5.73 16 3 C 0.26 12.73 1.81 44.24 0.08 12.81 16 4 H 0.02 1.25 6.07 -2.39 -0.01 1.23 16 5 C -0.60 -33.24 9.09 25.60 0.23 -33.00 16 6 H 0.04 2.29 7.95 -2.91 -0.02 2.27 16 7 C -0.01 -0.60 5.42 84.66 0.46 -0.14 16 8 N -0.94 -57.43 13.70 21.45 0.29 -57.14 16 9 Si 1.08 51.58 25.39 68.60 1.74 53.32 16 10 H -0.26 -11.22 6.73 99.48 0.67 -10.55 16 11 H -0.27 -12.31 6.38 99.48 0.63 -11.67 16 12 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 13 N -0.72 -29.05 5.03 -461.41 -2.32 -31.38 16 14 C 0.70 26.29 7.15 179.06 1.28 27.57 16 15 O -0.63 -28.10 13.48 -4.02 -0.05 -28.15 16 16 N -0.73 -20.29 5.55 -482.29 -2.68 -22.97 16 17 C 0.19 4.56 5.80 85.63 0.50 5.06 16 18 C -0.15 -2.84 5.25 -19.85 -0.10 -2.95 16 19 C -0.06 -1.04 9.69 22.25 0.22 -0.82 16 20 C -0.21 -3.30 9.04 22.37 0.20 -3.10 16 21 C 0.12 2.21 6.69 22.51 0.15 2.36 16 22 O -0.34 -5.64 10.50 -92.43 -0.97 -6.61 16 23 C 0.02 0.15 9.81 113.37 1.11 1.26 16 24 C -0.17 -3.02 9.99 22.37 0.22 -2.79 16 25 C -0.06 -1.16 9.69 22.25 0.22 -0.94 16 26 H 0.05 1.95 5.64 -2.39 -0.01 1.94 16 27 H 0.04 1.62 7.87 -2.38 -0.02 1.60 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.30 4.43 -2.39 -0.01 2.29 16 30 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.26 15.78 8.72 -92.71 -0.81 14.97 16 32 H 0.40 14.31 8.54 -92.71 -0.79 13.52 16 33 H 0.40 9.34 8.48 -92.71 -0.79 8.56 16 34 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.07 1.67 8.08 -2.39 -0.02 1.66 16 36 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16 38 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 39 H 0.06 0.46 7.66 -2.38 -0.02 0.44 16 40 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -70.16 341.10 0.67 -69.49 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.68 Total: 28.33 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.34 Total: -4.90 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -4.70 Total: -111.48 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.02 Total: -34.76 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 1.74 Total: 53.32 kcal Total: -70.16 0.67 -69.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185568046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.929 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds