Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08999 * 109.47409 * 54.99273 * 3 2 1 5 5 C 1.50700 * 109.47460 * 174.99815 * 3 2 1 6 6 H 1.07996 * 120.00450 * 119.99494 * 5 3 2 7 7 C 1.37880 * 119.99855 * 299.99893 * 5 3 2 8 8 N 1.31515 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46857 * 120.00042 * 9 7 5 12 12 H 1.48503 * 109.46781 * 239.99807 * 9 7 5 13 13 N 1.46504 * 109.47009 * 294.99437 * 3 2 1 14 14 C 1.34777 * 119.99854 * 84.99752 * 13 3 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 3 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 C 1.38262 * 119.94448 * 269.72555 * 18 17 16 20 20 C 1.38144 * 120.05857 * 179.72526 * 19 18 17 21 21 C 1.38734 * 119.94226 * 0.56901 * 20 19 18 22 22 O 1.35894 * 120.05595 * 179.67936 * 21 20 19 23 23 C 1.42898 * 117.00272 * 0.02748 * 22 21 20 24 24 C 1.38733 * 119.88670 * 359.70683 * 21 20 19 25 25 C 1.38146 * 119.94697 * 359.97438 * 24 21 20 26 26 H 1.09001 * 109.47187 * 300.01041 * 1 2 3 27 27 H 1.08999 * 109.46595 * 60.00514 * 1 2 3 28 28 H 1.08993 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47496 * 239.99288 * 2 1 3 30 30 H 1.09008 * 109.46799 * 119.99569 * 2 1 3 31 31 H 0.97002 * 120.00404 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00410 * 265.00478 * 13 3 2 33 33 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 34 34 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 35 35 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 36 36 H 1.08010 * 119.96991 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.02876 * 180.25002 * 20 19 18 38 38 H 1.09005 * 109.46880 * 59.99191 * 23 22 21 39 39 H 1.08998 * 109.47381 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.46766 * 299.99943 * 23 22 21 41 41 H 1.07995 * 120.02823 * 179.97438 * 24 21 20 42 42 H 1.07997 * 119.97673 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8800 1.3813 10 1 6.5989 1.5440 0.1933 11 1 6.3999 1.6157 2.6094 12 1 6.4961 -0.5191 1.4630 13 7 1.6526 2.0974 -1.2519 14 6 0.4354 2.6643 -1.3672 15 8 -0.3411 2.6325 -0.4320 16 7 0.0768 3.2619 -2.5207 17 6 -1.2486 3.8729 -2.6481 18 6 -1.3976 4.4673 -4.0249 19 6 -1.0305 5.7806 -4.2530 20 6 -1.1608 6.3262 -5.5155 21 6 -1.6715 5.5586 -6.5522 22 8 -1.8068 6.0950 -7.7935 23 6 -1.4026 7.4554 -7.9600 24 6 -2.0445 4.2428 -6.3193 25 6 -1.9060 3.6999 -5.0566 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8291 -0.0610 2.9501 32 1 2.2721 2.1230 -1.9979 33 1 0.6963 3.2875 -3.2667 34 1 -2.0151 3.1130 -2.4958 35 1 -1.3607 4.6571 -1.8993 36 1 -0.6378 6.3794 -3.4444 37 1 -0.8702 7.3509 -5.6941 38 1 -0.3456 7.5534 -7.7120 39 1 -1.5623 7.7579 -8.9949 40 1 -1.9911 8.0926 -7.2999 41 1 -2.4427 3.6434 -7.1246 42 1 -2.1958 2.6755 -4.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185568047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = -48.899380 kcal Electronic energy + Delta-G solvation = -22725.752226 eV Core-core repulsion = 19285.049918 eV Total energy + Delta-G solvation = -3440.702308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43278 -39.26763 -37.89603 -35.33415 -33.99382 -32.32184 -31.38467 -31.11192 -30.11425 -27.90879 -26.88499 -25.17522 -22.94508 -22.83792 -21.38261 -20.53638 -19.37807 -18.45273 -18.03971 -16.57224 -16.35875 -16.05611 -15.57111 -15.24510 -14.95321 -14.65363 -14.37765 -14.08715 -13.77535 -13.61359 -13.21352 -12.87534 -12.72026 -12.55753 -12.26489 -11.84726 -11.56363 -11.42217 -11.32626 -11.19944 -11.03805 -10.90634 -10.78956 -10.26159 -10.10024 -9.56546 -9.29148 -9.23192 -8.95648 -8.56991 -8.45423 -8.37965 -7.65068 -6.07698 -4.16280 1.09294 1.13171 2.95614 3.26029 3.30592 3.34518 3.37641 3.81426 4.07762 4.37341 4.51587 4.62265 4.69644 4.76728 4.78884 5.09128 5.14216 5.16782 5.21573 5.26248 5.39435 5.62260 5.84104 5.88865 6.02914 6.09833 6.47218 6.48282 6.50522 6.56451 6.75104 6.93297 7.08958 7.12684 7.23221 7.47815 7.49174 7.61616 7.70887 7.96294 8.13766 8.26566 8.83822 9.03398 9.42582 9.58445 10.97751 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002850 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.492564 B = 9823.336466 C =10481.550253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.726 5.726 14 C 0.694 3.306 15 O -0.595 6.595 16 N -0.756 5.756 17 C 0.187 3.813 18 C -0.137 4.137 19 C -0.060 4.060 20 C -0.211 4.211 21 C 0.128 3.872 22 O -0.319 6.319 23 C 0.027 3.973 24 C -0.154 4.154 25 C -0.060 4.060 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.383 0.617 33 H 0.390 0.610 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.131 0.869 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.038 11.068 -18.343 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.378 5.378 14 C 0.395 3.605 15 O -0.474 6.474 16 N -0.414 5.414 17 C 0.062 3.938 18 C -0.138 4.138 19 C -0.078 4.078 20 C -0.230 4.230 21 C 0.083 3.917 22 O -0.233 6.233 23 C -0.068 4.068 24 C -0.173 4.173 25 C -0.079 4.079 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.215 0.785 33 H 0.223 0.777 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.149 0.851 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.802 10.837 -17.402 22.724 hybrid contribution 1.692 0.285 -0.544 1.800 sum -8.111 11.122 -17.946 22.617 Atomic orbital electron populations 1.21805 0.98313 0.97697 1.01346 1.21945 0.92707 1.00011 1.02037 1.18648 0.93784 0.88828 0.80320 0.93407 1.21288 0.90861 1.38668 1.06129 0.92151 1.24884 0.98499 0.94936 0.95441 1.69913 1.34932 1.37804 1.09346 0.86416 0.85029 0.77715 0.78048 1.19807 1.20938 1.20927 1.45768 1.13698 1.59289 1.19008 1.16111 0.83331 0.78641 0.82464 1.90882 1.52378 1.65395 1.38735 1.45271 1.17234 1.63240 1.15646 1.19815 0.85083 0.97032 0.91826 1.19927 1.03310 0.94548 0.95975 1.20940 0.96109 0.94605 0.96181 1.21231 1.07274 1.00786 0.93666 1.19089 0.95674 0.93123 0.83857 1.86064 1.80905 1.28547 1.27759 1.23060 0.99937 0.80573 1.03231 1.20433 1.05720 0.93083 0.98073 1.20969 0.96071 0.99632 0.91212 0.93226 0.94168 0.96164 0.95215 0.88435 0.92681 0.78524 0.77672 0.91260 0.91313 0.85400 0.85436 0.92549 0.88273 0.92602 0.85134 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.32 16 3 C 0.29 7.32 2.24 -69.08 -0.15 7.17 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.93 11.29 55.43 0.63 -24.30 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 N -0.73 -15.33 5.03 -59.81 -0.30 -15.64 16 14 C 0.69 14.10 7.13 -86.92 -0.62 13.48 16 15 O -0.59 -14.31 13.48 5.28 0.07 -14.24 16 16 N -0.76 -11.45 5.55 -66.41 -0.37 -11.82 16 17 C 0.19 2.48 5.80 -5.19 -0.03 2.45 16 18 C -0.14 -1.50 5.25 -104.60 -0.55 -2.04 16 19 C -0.06 -0.60 9.69 -39.61 -0.38 -0.99 16 20 C -0.21 -1.97 9.04 -39.43 -0.36 -2.33 16 21 C 0.13 1.30 6.69 -39.22 -0.26 1.03 16 22 O -0.32 -3.04 10.50 -19.41 -0.20 -3.24 16 23 C 0.03 0.15 9.81 101.05 0.99 1.15 16 24 C -0.15 -1.54 9.99 -39.43 -0.39 -1.93 16 25 C -0.06 -0.61 9.69 -39.60 -0.38 -0.99 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.91 5.65 -51.93 -0.29 0.61 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.10 2.67 5.95 -51.92 -0.31 2.36 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.38 7.08 8.55 -40.82 -0.35 6.73 16 33 H 0.39 5.03 8.48 -40.82 -0.35 4.68 16 34 H 0.07 0.96 8.08 -51.92 -0.42 0.54 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 38 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 39 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -31.76 346.50 -8.48 -40.24 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.14 Total: 9.94 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.37 Total: -1.88 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.04 Total: -51.76 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.13 Total: -17.48 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.76 -8.48 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185568047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.657 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds