Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47417 * 2 1 4 4 H 1.08999 * 109.47409 * 54.99273 * 3 2 1 5 5 C 1.50700 * 109.47460 * 174.99815 * 3 2 1 6 6 H 1.07996 * 120.00450 * 119.99494 * 5 3 2 7 7 C 1.37880 * 119.99855 * 299.99893 * 5 3 2 8 8 N 1.31515 * 119.99924 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99947 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47178 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46857 * 120.00042 * 9 7 5 12 12 H 1.48503 * 109.46781 * 239.99807 * 9 7 5 13 13 N 1.46504 * 109.47009 * 294.99437 * 3 2 1 14 14 C 1.34777 * 119.99854 * 84.99752 * 13 3 2 15 15 O 1.21593 * 119.99953 * 0.02562 * 14 13 3 16 16 N 1.34773 * 120.00097 * 180.27545 * 14 13 3 17 17 C 1.46500 * 120.00431 * 179.72742 * 16 14 13 18 18 C 1.50698 * 109.47467 * 180.02562 * 17 16 14 19 19 C 1.38262 * 119.94448 * 269.72555 * 18 17 16 20 20 C 1.38144 * 120.05857 * 179.72526 * 19 18 17 21 21 C 1.38734 * 119.94226 * 0.56901 * 20 19 18 22 22 O 1.35894 * 120.05595 * 179.67936 * 21 20 19 23 23 C 1.42898 * 117.00272 * 0.02748 * 22 21 20 24 24 C 1.38733 * 119.88670 * 359.70683 * 21 20 19 25 25 C 1.38146 * 119.94697 * 359.97438 * 24 21 20 26 26 H 1.09001 * 109.47187 * 300.01041 * 1 2 3 27 27 H 1.08999 * 109.46595 * 60.00514 * 1 2 3 28 28 H 1.08993 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47496 * 239.99288 * 2 1 3 30 30 H 1.09008 * 109.46799 * 119.99569 * 2 1 3 31 31 H 0.97002 * 120.00404 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00410 * 265.00478 * 13 3 2 33 33 H 0.97000 * 120.00112 * 359.73180 * 16 14 13 34 34 H 1.09009 * 109.46712 * 300.00517 * 17 16 14 35 35 H 1.08998 * 109.47207 * 59.99494 * 17 16 14 36 36 H 1.08010 * 119.96991 * 359.97438 * 19 18 17 37 37 H 1.07998 * 120.02876 * 180.25002 * 20 19 18 38 38 H 1.09005 * 109.46880 * 59.99191 * 23 22 21 39 39 H 1.08998 * 109.47381 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.46766 * 299.99943 * 23 22 21 41 41 H 1.07995 * 120.02823 * 179.97438 * 24 21 20 42 42 H 1.07997 * 119.97673 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4061 0.3375 2.1734 9 14 6.0050 0.8800 1.3813 10 1 6.5989 1.5440 0.1933 11 1 6.3999 1.6157 2.6094 12 1 6.4961 -0.5191 1.4630 13 7 1.6526 2.0974 -1.2519 14 6 0.4354 2.6643 -1.3672 15 8 -0.3411 2.6325 -0.4320 16 7 0.0768 3.2619 -2.5207 17 6 -1.2486 3.8729 -2.6481 18 6 -1.3976 4.4673 -4.0249 19 6 -1.0305 5.7806 -4.2530 20 6 -1.1608 6.3262 -5.5155 21 6 -1.6715 5.5586 -6.5522 22 8 -1.8068 6.0950 -7.7935 23 6 -1.4026 7.4554 -7.9600 24 6 -2.0445 4.2428 -6.3193 25 6 -1.9060 3.6999 -5.0566 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8291 -0.0610 2.9501 32 1 2.2721 2.1230 -1.9979 33 1 0.6963 3.2875 -3.2667 34 1 -2.0151 3.1130 -2.4958 35 1 -1.3607 4.6571 -1.8993 36 1 -0.6378 6.3794 -3.4444 37 1 -0.8702 7.3509 -5.6941 38 1 -0.3456 7.5534 -7.7120 39 1 -1.5623 7.7579 -8.9949 40 1 -1.9911 8.0926 -7.2999 41 1 -2.4427 3.6434 -7.1246 42 1 -2.1958 2.6755 -4.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185568047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = -70.310757 kcal Electronic energy + Delta-G solvation = -22726.680693 eV Core-core repulsion = 19285.049918 eV Total energy + Delta-G solvation = -3441.630775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.24779 -40.76866 -38.74097 -37.08696 -35.43665 -34.24132 -32.82536 -32.08221 -31.32923 -28.97551 -28.31460 -26.29077 -24.83715 -23.61409 -22.44131 -22.02735 -21.24441 -19.71871 -19.10785 -18.09886 -17.37249 -17.25840 -16.65932 -16.56773 -16.37397 -16.12342 -15.44994 -15.28787 -14.89420 -14.71518 -14.49229 -14.43581 -14.06706 -13.59685 -13.50492 -13.21745 -13.15111 -12.83983 -12.78789 -12.67173 -12.45526 -12.12735 -12.02245 -11.97229 -11.74190 -11.54880 -11.05142 -10.97051 -10.51066 -10.05817 -9.97074 -9.40389 -9.17101 -8.13026 -6.29695 0.29175 0.37760 1.45646 1.46587 1.58423 2.07046 2.36974 2.42021 2.46737 2.82555 3.16384 3.73475 3.75812 3.82557 3.95125 4.22481 4.39826 4.40705 4.43011 4.54449 4.61164 4.63076 4.72497 4.77203 4.78209 4.83822 5.08267 5.11418 5.24132 5.29678 5.34980 5.50105 5.59566 5.62246 5.64958 5.68997 5.77095 5.83491 5.93804 6.22522 6.41496 6.43437 6.79701 7.38254 7.44643 7.90710 8.92718 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002850 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.492564 B = 9823.336466 C =10481.550253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.296 3.704 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.723 5.723 14 C 0.693 3.307 15 O -0.635 6.635 16 N -0.734 5.734 17 C 0.190 3.810 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.211 4.211 21 C 0.123 3.877 22 O -0.334 6.334 23 C 0.017 3.983 24 C -0.163 4.163 25 C -0.061 4.061 26 H 0.024 0.976 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.398 0.602 33 H 0.405 0.595 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.142 0.858 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.290 11.899 -20.592 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.192 3.808 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.376 5.376 14 C 0.393 3.607 15 O -0.517 6.517 16 N -0.392 5.392 17 C 0.067 3.933 18 C -0.146 4.146 19 C -0.081 4.081 20 C -0.229 4.229 21 C 0.077 3.923 22 O -0.248 6.248 23 C -0.077 4.077 24 C -0.182 4.182 25 C -0.079 4.079 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.167 0.833 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.054 11.701 -19.732 24.663 hybrid contribution 1.386 0.119 0.070 1.393 sum -7.668 11.820 -19.662 24.189 Atomic orbital electron populations 1.21628 0.96997 0.98787 1.00233 1.21796 0.93775 0.99353 1.01100 1.18219 0.93307 0.88791 0.80516 0.98553 1.21605 0.91463 1.38667 1.06567 0.91177 1.25767 1.03256 0.94480 0.95055 1.70062 1.36932 1.38491 1.09883 0.85322 0.79205 0.77782 0.78146 1.18507 1.21056 1.20480 1.45418 1.14542 1.59456 1.18187 1.16230 0.82599 0.78628 0.83231 1.90860 1.53405 1.66830 1.40607 1.45090 1.18209 1.61617 1.14272 1.19837 0.83615 0.96533 0.93360 1.19691 1.05041 0.95122 0.94727 1.21065 0.95912 0.94324 0.96848 1.21434 1.06711 1.01752 0.93017 1.19286 0.95267 0.93327 0.84386 1.86052 1.80974 1.30429 1.27367 1.23348 1.00559 0.78952 1.04820 1.20617 1.05813 0.93494 0.98257 1.21054 0.95731 1.00000 0.91118 0.95713 0.93828 0.93835 0.94211 0.91068 0.92641 0.76766 0.75960 0.91853 0.92094 0.84701 0.83327 0.91777 0.86351 0.91662 0.84064 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -6.09 5.45 30.59 0.17 -5.92 16 3 C 0.30 15.43 2.24 44.24 0.10 15.53 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.54 -29.06 8.73 25.60 0.22 -28.83 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.78 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.76 11.29 21.45 0.24 -52.52 16 9 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.72 -30.48 5.03 -461.41 -2.32 -32.79 16 14 C 0.69 28.17 7.13 179.06 1.28 29.44 16 15 O -0.63 -31.27 13.48 -4.01 -0.05 -31.32 16 16 N -0.73 -21.60 5.55 -482.29 -2.68 -24.28 16 17 C 0.19 4.95 5.80 85.63 0.50 5.44 16 18 C -0.15 -2.99 5.25 -19.85 -0.10 -3.09 16 19 C -0.06 -1.16 9.69 22.25 0.22 -0.95 16 20 C -0.21 -3.48 9.04 22.37 0.20 -3.28 16 21 C 0.12 2.25 6.69 22.51 0.15 2.40 16 22 O -0.33 -5.68 10.50 -92.36 -0.97 -6.65 16 23 C 0.02 0.16 9.81 113.37 1.11 1.27 16 24 C -0.16 -2.98 9.99 22.37 0.22 -2.76 16 25 C -0.06 -1.14 9.69 22.26 0.22 -0.92 16 26 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 27 H 0.04 1.97 5.65 -2.39 -0.01 1.95 16 28 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 3.99 5.95 -2.38 -0.01 3.97 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.40 14.26 8.55 -92.71 -0.79 13.47 16 33 H 0.41 9.73 8.48 -92.71 -0.79 8.95 16 34 H 0.06 1.74 8.08 -2.38 -0.02 1.72 16 35 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.15 1.74 6.30 -2.91 -0.02 1.72 16 38 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 41 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -69.23 346.50 1.05 -68.18 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.54 Total: 30.42 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.34 Total: 4.63 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -4.75 Total: -109.59 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.02 Total: -37.97 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -69.23 1.05 -68.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185568047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.128 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds