Wall clock time and date at job start Tue Mar 31 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46907 * 54.42618 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.08005 * 119.99629 * 114.20010 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31516 * 119.99377 * 159.34627 * 7 5 3 9 9 Si 1.86791 * 120.00253 * 339.34456 * 7 5 3 10 10 H 1.48498 * 109.47412 * 269.99915 * 9 7 5 11 11 H 1.48505 * 109.47047 * 30.00019 * 9 7 5 12 12 H 1.48500 * 109.47245 * 150.00182 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34782 * 119.99854 * 84.99547 * 13 3 2 15 15 O 1.21586 * 120.00225 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99680 * 179.97438 * 14 13 3 17 17 C 1.46499 * 119.99899 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47216 * 179.97438 * 17 16 14 19 19 C 1.38166 * 120.02750 * 259.99817 * 18 17 16 20 20 C 1.38238 * 120.05461 * 179.97438 * 19 18 17 21 21 C 1.38299 * 120.11266 * 0.02841 * 20 19 18 22 22 C 1.38115 * 120.05198 * 0.02562 * 21 20 19 23 23 C 1.38706 * 120.02535 * 79.72293 * 18 17 16 24 24 O 1.35899 * 120.05861 * 359.97438 * 23 18 17 25 25 C 1.42903 * 117.00276 * 179.97438 * 24 23 18 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.96997 * 120.00177 * 354.93274 * 8 7 5 32 32 H 0.96992 * 119.99998 * 264.99956 * 13 3 2 33 33 H 0.97004 * 120.00122 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.46996 * 299.99752 * 17 16 14 35 35 H 1.09003 * 109.47538 * 60.00117 * 17 16 14 36 36 H 1.07999 * 119.97265 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.94880 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.97212 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.02643 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47448 * 300.00383 * 25 24 23 41 41 H 1.08998 * 109.46782 * 60.00507 * 25 24 23 42 42 H 1.09000 * 109.47317 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5975 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2973 9 14 3.1339 0.9232 2.8818 10 1 3.2702 2.2112 3.6083 11 1 1.7040 0.6861 2.5585 12 1 3.6383 -0.1822 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4482 2.6598 -1.3861 15 8 -0.3370 2.6312 -0.4582 16 7 0.1028 3.2590 -2.5429 17 6 -1.2190 3.8753 -2.6824 18 6 -1.3524 4.4715 -4.0600 19 6 -1.1725 5.8286 -4.2465 20 6 -1.2942 6.3760 -5.5100 21 6 -1.5968 5.5673 -6.5903 22 6 -1.7786 4.2102 -6.4090 23 6 -1.6502 3.6573 -5.1428 24 8 -1.8216 2.3212 -4.9630 25 6 -2.1270 1.5443 -6.1229 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5739 0.4633 32 1 2.2908 2.1165 -1.9977 33 1 0.7296 3.2829 -3.2828 34 1 -1.9899 3.1184 -2.5374 35 1 -1.3349 4.6599 -1.9346 36 1 -0.9366 6.4623 -3.4044 37 1 -1.1528 7.4370 -5.6539 38 1 -1.6917 5.9974 -7.5764 39 1 -2.0153 3.5791 -7.2529 40 1 -3.0567 1.9019 -6.5653 41 1 -1.3188 1.6409 -6.8479 42 1 -2.2386 0.4976 -5.8401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186157921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:55 Heat of formation + Delta-G solvation = -47.379623 kcal Electronic energy + Delta-G solvation = -23432.279778 eV Core-core repulsion = 19991.643372 eV Total energy + Delta-G solvation = -3440.636406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54156 -39.24270 -37.65464 -35.61383 -34.26748 -32.40518 -31.77612 -30.70021 -30.28922 -27.67406 -27.15969 -25.60765 -22.38048 -22.28653 -21.68463 -20.69302 -19.49305 -18.46942 -18.14008 -17.02378 -16.50201 -16.09822 -15.80873 -15.50799 -15.00555 -14.69377 -14.37787 -13.93540 -13.73787 -13.30568 -13.08493 -12.84170 -12.76522 -12.46319 -12.23667 -12.20043 -12.07933 -11.66175 -11.46679 -11.37543 -11.00659 -10.70523 -10.60823 -10.37205 -9.78688 -9.62405 -9.46910 -9.11638 -9.00983 -8.59803 -8.41095 -8.23968 -7.83475 -6.52219 -4.13493 0.99059 1.17971 3.04928 3.29962 3.47522 3.51554 3.68134 3.75495 4.00002 4.45119 4.50782 4.55903 4.76497 4.82505 4.88934 5.05210 5.10118 5.14316 5.20478 5.25013 5.38250 5.58021 5.67416 5.97094 6.04876 6.20358 6.21520 6.22386 6.30489 6.41275 6.52506 6.81181 6.88310 6.94735 7.08921 7.14138 7.20230 7.38229 7.57095 7.70301 7.98436 8.32146 8.81242 8.91732 9.40439 9.54933 10.86455 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.003560 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.823658 B = 7864.287798 C = 8179.853072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.265 3.735 4 H 0.043 0.957 5 C -0.619 4.619 6 H 0.061 0.939 7 C 0.043 3.957 8 N -0.896 5.896 9 Si 1.034 2.966 10 H -0.284 1.284 11 H -0.267 1.267 12 H -0.285 1.285 13 N -0.721 5.721 14 C 0.697 3.303 15 O -0.598 6.598 16 N -0.749 5.749 17 C 0.194 3.806 18 C -0.135 4.135 19 C -0.062 4.062 20 C -0.161 4.161 21 C -0.076 4.076 22 C -0.214 4.214 23 C 0.144 3.856 24 O -0.305 6.305 25 C 0.027 3.973 26 H 0.051 0.949 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.386 0.614 33 H 0.390 0.610 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.952 7.299 -17.916 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C 0.161 3.839 4 H 0.060 0.940 5 C -0.657 4.657 6 H 0.079 0.921 7 C -0.163 4.163 8 N -0.529 5.529 9 Si 0.861 3.139 10 H -0.210 1.210 11 H -0.192 1.192 12 H -0.211 1.211 13 N -0.372 5.372 14 C 0.397 3.603 15 O -0.477 6.477 16 N -0.406 5.406 17 C 0.069 3.931 18 C -0.137 4.137 19 C -0.080 4.080 20 C -0.180 4.180 21 C -0.095 4.095 22 C -0.233 4.233 23 C 0.098 3.902 24 O -0.218 6.218 25 C -0.068 4.068 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.219 0.781 33 H 0.223 0.777 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.538 6.768 -15.209 22.772 hybrid contribution 0.525 0.371 -2.864 2.936 sum -15.013 7.139 -18.073 24.556 Atomic orbital electron populations 1.21860 0.97308 0.98453 1.02222 1.22206 0.93862 0.99933 1.00758 1.18951 0.95259 0.88158 0.81512 0.93969 1.22082 0.89931 1.49064 1.04621 0.92135 1.25637 0.96848 0.92032 1.01825 1.70835 1.10567 1.40546 1.30960 0.84182 0.76538 0.77298 0.75855 1.21044 1.19197 1.21092 1.45492 1.13666 1.59476 1.18583 1.16084 0.83175 0.78559 0.82498 1.90863 1.51786 1.65616 1.39477 1.45144 1.17197 1.62710 1.15570 1.19684 0.85290 0.96923 0.91183 1.19384 1.06853 0.93112 0.94315 1.21015 0.95973 0.93384 0.97668 1.21066 1.04092 1.00133 0.92672 1.20966 0.96709 0.92856 0.98949 1.21239 1.09163 0.96747 0.96115 1.18934 0.94816 0.83225 0.93219 1.86198 1.84747 1.15927 1.34905 1.23079 1.00047 0.95913 0.87778 0.93031 0.95505 0.93028 0.93415 0.92397 0.92062 0.78142 0.77714 0.90961 0.91285 0.84983 0.85755 0.85853 0.85449 0.92758 0.92650 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.53 37.16 0.32 -2.73 16 2 C -0.13 -3.00 5.03 -26.73 -0.13 -3.13 16 3 C 0.27 6.58 1.78 -69.08 -0.12 6.45 16 4 H 0.04 1.14 5.99 -51.93 -0.31 0.83 16 5 C -0.62 -17.11 8.97 -34.44 -0.31 -17.41 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 7 C 0.04 1.24 5.25 -17.82 -0.09 1.15 16 8 N -0.90 -27.01 13.70 55.43 0.76 -26.25 16 9 Si 1.03 25.60 26.33 -169.99 -4.48 21.13 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.34 5.88 56.52 0.33 -6.01 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.72 -15.33 5.03 -59.81 -0.30 -15.64 16 14 C 0.70 14.21 7.16 -86.91 -0.62 13.59 16 15 O -0.60 -14.14 13.48 5.29 0.07 -14.06 16 16 N -0.75 -11.89 5.55 -66.41 -0.37 -12.26 16 17 C 0.19 2.75 5.46 -5.19 -0.03 2.72 16 18 C -0.14 -1.59 5.26 -104.47 -0.55 -2.14 16 19 C -0.06 -0.62 9.66 -39.61 -0.38 -1.00 16 20 C -0.16 -1.39 10.04 -39.56 -0.40 -1.78 16 21 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 22 C -0.21 -1.95 9.04 -39.43 -0.36 -2.30 16 23 C 0.14 1.62 6.66 -39.22 -0.26 1.36 16 24 O -0.31 -3.58 9.74 -19.42 -0.19 -3.77 16 25 C 0.03 0.21 9.81 101.05 0.99 1.20 16 26 H 0.05 1.13 5.63 -51.93 -0.29 0.83 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.39 5.64 -51.93 -0.29 1.10 16 31 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 32 H 0.39 7.43 8.54 -40.82 -0.35 7.08 16 33 H 0.39 5.43 8.48 -40.82 -0.35 5.09 16 34 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 35 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 36 H 0.13 1.16 8.04 -52.49 -0.42 0.74 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 40 H 0.05 0.33 7.65 -51.93 -0.40 -0.07 16 41 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.54 15.07 5.15 5.15 Total: -1.00 -33.16 341.54 -7.83 -40.99 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.12 Total: 9.79 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -2.35 Total: -5.06 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.09 Total: -54.15 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.12 Total: -17.84 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -4.48 Total: 21.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.16 -7.83 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186157921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.393 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds