Wall clock time and date at job start Tue Mar 31 2020 06:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09002 * 109.46907 * 54.42618 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.08005 * 119.99629 * 114.20010 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31516 * 119.99377 * 159.34627 * 7 5 3 9 9 Si 1.86791 * 120.00253 * 339.34456 * 7 5 3 10 10 H 1.48498 * 109.47412 * 269.99915 * 9 7 5 11 11 H 1.48505 * 109.47047 * 30.00019 * 9 7 5 12 12 H 1.48500 * 109.47245 * 150.00182 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34782 * 119.99854 * 84.99547 * 13 3 2 15 15 O 1.21586 * 120.00225 * 0.02562 * 14 13 3 16 16 N 1.34775 * 119.99680 * 179.97438 * 14 13 3 17 17 C 1.46499 * 119.99899 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47216 * 179.97438 * 17 16 14 19 19 C 1.38166 * 120.02750 * 259.99817 * 18 17 16 20 20 C 1.38238 * 120.05461 * 179.97438 * 19 18 17 21 21 C 1.38299 * 120.11266 * 0.02841 * 20 19 18 22 22 C 1.38115 * 120.05198 * 0.02562 * 21 20 19 23 23 C 1.38706 * 120.02535 * 79.72293 * 18 17 16 24 24 O 1.35899 * 120.05861 * 359.97438 * 23 18 17 25 25 C 1.42903 * 117.00276 * 179.97438 * 24 23 18 26 26 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 27 27 H 1.08994 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.96997 * 120.00177 * 354.93274 * 8 7 5 32 32 H 0.96992 * 119.99998 * 264.99956 * 13 3 2 33 33 H 0.97004 * 120.00122 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.46996 * 299.99752 * 17 16 14 35 35 H 1.09003 * 109.47538 * 60.00117 * 17 16 14 36 36 H 1.07999 * 119.97265 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.94880 * 180.02562 * 20 19 18 38 38 H 1.07999 * 119.97212 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.02643 * 179.97438 * 22 21 20 40 40 H 1.08997 * 109.47448 * 300.00383 * 25 24 23 41 41 H 1.08998 * 109.46782 * 60.00507 * 25 24 23 42 42 H 1.09000 * 109.47317 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5975 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2973 9 14 3.1339 0.9232 2.8818 10 1 3.2702 2.2112 3.6083 11 1 1.7040 0.6861 2.5585 12 1 3.6383 -0.1822 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4482 2.6598 -1.3861 15 8 -0.3370 2.6312 -0.4582 16 7 0.1028 3.2590 -2.5429 17 6 -1.2190 3.8753 -2.6824 18 6 -1.3524 4.4715 -4.0600 19 6 -1.1725 5.8286 -4.2465 20 6 -1.2942 6.3760 -5.5100 21 6 -1.5968 5.5673 -6.5903 22 6 -1.7786 4.2102 -6.4090 23 6 -1.6502 3.6573 -5.1428 24 8 -1.8216 2.3212 -4.9630 25 6 -2.1270 1.5443 -6.1229 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5739 0.4633 32 1 2.2908 2.1165 -1.9977 33 1 0.7296 3.2829 -3.2828 34 1 -1.9899 3.1184 -2.5374 35 1 -1.3349 4.6599 -1.9346 36 1 -0.9366 6.4623 -3.4044 37 1 -1.1528 7.4370 -5.6539 38 1 -1.6917 5.9974 -7.5764 39 1 -2.0153 3.5791 -7.2529 40 1 -3.0567 1.9019 -6.5653 41 1 -1.3188 1.6409 -6.8479 42 1 -2.2386 0.4976 -5.8401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186157921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:54 Heat of formation + Delta-G solvation = -70.987467 kcal Electronic energy + Delta-G solvation = -23433.303491 eV Core-core repulsion = 19991.643372 eV Total energy + Delta-G solvation = -3441.660119 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41219 -40.77291 -38.41688 -37.32504 -35.72616 -34.44536 -33.31505 -31.95755 -31.03242 -29.13860 -28.22365 -26.77862 -24.25631 -23.08102 -22.73153 -22.19637 -21.31962 -20.21155 -19.14309 -18.67215 -17.51221 -17.25625 -16.78290 -16.59296 -16.38158 -15.91292 -15.45127 -15.29708 -14.98193 -14.90201 -14.48217 -14.31279 -14.26534 -13.85743 -13.65457 -13.48325 -13.32823 -12.84756 -12.64259 -12.47263 -12.36686 -12.29746 -12.01576 -11.73436 -11.69421 -11.51838 -11.16345 -11.10284 -10.44696 -10.11651 -9.91855 -9.55700 -9.16503 -8.78410 -6.40319 0.24029 0.46641 1.49407 1.50968 1.74072 2.01715 2.34946 2.38379 2.45131 2.82397 2.99702 3.60017 3.65097 3.85893 4.06773 4.26156 4.35198 4.35722 4.37930 4.43405 4.43814 4.54547 4.59691 4.66819 4.72174 4.82003 4.90883 5.02394 5.10068 5.24982 5.34091 5.35927 5.47258 5.53303 5.57190 5.63330 5.67079 5.76712 5.84890 6.04377 6.26636 6.44761 6.57472 7.30160 7.31371 7.79170 8.59317 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024689 B = 0.003560 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.823658 B = 7864.287798 C = 8179.853072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.022 0.978 5 C -0.617 4.617 6 H 0.039 0.961 7 C 0.001 3.999 8 N -0.924 5.924 9 Si 1.069 2.931 10 H -0.275 1.275 11 H -0.254 1.254 12 H -0.278 1.278 13 N -0.722 5.722 14 C 0.697 3.303 15 O -0.630 6.630 16 N -0.731 5.731 17 C 0.199 3.801 18 C -0.156 4.156 19 C -0.068 4.068 20 C -0.162 4.162 21 C -0.072 4.072 22 C -0.215 4.215 23 C 0.130 3.870 24 O -0.334 6.334 25 C 0.020 3.980 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.260 0.740 32 H 0.396 0.604 33 H 0.401 0.599 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 8.007 -19.692 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.165 4.165 3 C 0.166 3.834 4 H 0.040 0.960 5 C -0.655 4.655 6 H 0.057 0.943 7 C -0.200 4.200 8 N -0.558 5.558 9 Si 0.891 3.109 10 H -0.201 1.201 11 H -0.178 1.178 12 H -0.204 1.204 13 N -0.374 5.374 14 C 0.397 3.603 15 O -0.512 6.512 16 N -0.387 5.387 17 C 0.075 3.925 18 C -0.157 4.157 19 C -0.087 4.087 20 C -0.180 4.180 21 C -0.090 4.090 22 C -0.234 4.234 23 C 0.084 3.916 24 O -0.248 6.248 25 C -0.075 4.075 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.230 0.770 33 H 0.236 0.764 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.993 7.500 -17.054 25.216 hybrid contribution 0.959 0.220 -2.476 2.665 sum -16.034 7.720 -19.530 26.422 Atomic orbital electron populations 1.21709 0.95698 0.99929 1.01239 1.22114 0.95182 0.98575 1.00629 1.18652 0.93136 0.89211 0.82424 0.95991 1.22230 0.91468 1.47938 1.03832 0.94254 1.26740 0.97007 0.91585 1.04687 1.70929 1.11576 1.42825 1.30485 0.83721 0.76108 0.77891 0.73182 1.20119 1.17838 1.20357 1.45244 1.14484 1.59807 1.17882 1.16150 0.82426 0.78510 0.83237 1.90837 1.52568 1.66832 1.40987 1.45031 1.18080 1.61233 1.14332 1.19649 0.83538 0.96117 0.93189 1.19230 1.09410 0.94015 0.93019 1.21170 0.95916 0.92743 0.98847 1.21382 1.03135 1.01468 0.92020 1.21383 0.94920 0.92450 1.00225 1.21518 1.08499 0.97563 0.95804 1.19115 0.95371 0.83181 0.93946 1.86150 1.85063 1.16491 1.37082 1.23304 1.01246 0.95820 0.87106 0.93606 0.92727 0.94389 0.93010 0.93050 0.93104 0.77038 0.76400 0.92772 0.91691 0.84388 0.83396 0.82871 0.83356 0.91185 0.91475 0.87555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 8.53 71.98 0.61 -4.77 16 2 C -0.13 -5.78 5.03 30.59 0.15 -5.62 16 3 C 0.27 13.43 1.78 44.25 0.08 13.51 16 4 H 0.02 1.20 5.99 -2.39 -0.01 1.19 16 5 C -0.62 -34.44 8.97 25.60 0.23 -34.21 16 6 H 0.04 2.32 7.96 -2.91 -0.02 2.29 16 7 C 0.00 0.07 5.25 84.65 0.44 0.52 16 8 N -0.92 -56.37 13.70 21.45 0.29 -56.08 16 9 Si 1.07 51.55 26.33 68.60 1.81 53.35 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.66 5.88 99.48 0.59 -11.07 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.72 -30.67 5.03 -461.40 -2.32 -32.99 16 14 C 0.70 28.39 7.16 179.05 1.28 29.67 16 15 O -0.63 -29.94 13.48 -3.99 -0.05 -29.99 16 16 N -0.73 -23.03 5.55 -482.29 -2.68 -25.71 16 17 C 0.20 5.68 5.46 85.63 0.47 6.15 16 18 C -0.16 -3.53 5.26 -19.77 -0.10 -3.64 16 19 C -0.07 -1.26 9.66 22.25 0.22 -1.05 16 20 C -0.16 -2.32 10.04 22.28 0.22 -2.09 16 21 C -0.07 -0.93 10.04 22.25 0.22 -0.71 16 22 C -0.22 -3.35 9.04 22.37 0.20 -3.15 16 23 C 0.13 2.76 6.66 22.51 0.15 2.91 16 24 O -0.33 -7.60 9.74 -92.41 -0.90 -8.50 16 25 C 0.02 0.27 9.81 113.37 1.11 1.38 16 26 H 0.04 1.96 5.63 -2.38 -0.01 1.94 16 27 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.41 5.64 -2.39 -0.01 2.39 16 31 H 0.26 15.85 8.73 -92.71 -0.81 15.04 16 32 H 0.40 15.18 8.54 -92.71 -0.79 14.38 16 33 H 0.40 10.94 8.48 -92.70 -0.79 10.16 16 34 H 0.05 1.74 7.86 -2.39 -0.02 1.72 16 35 H 0.06 1.88 8.00 -2.39 -0.02 1.87 16 36 H 0.14 2.27 8.04 -2.91 -0.02 2.25 16 37 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.15 1.59 6.30 -2.91 -0.02 1.57 16 40 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 41 H 0.07 0.73 7.67 -2.39 -0.02 0.71 16 42 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -71.55 341.54 0.75 -70.80 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.69 Total: 30.22 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 5.29 Total: -1.10 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.71 Total: -114.78 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.95 Total: -38.49 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.81 Total: 53.35 kcal Total: -71.55 0.75 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186157921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.184 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds