Wall clock time and date at job start Tue Mar 31 2020 07:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 H 1.09001 * 109.46649 * 54.99987 * 3 2 1 5 5 C 1.52994 * 109.47050 * 175.00101 * 3 2 1 6 6 O 1.45198 * 109.47121 * 295.00410 * 3 2 1 7 7 C 1.34634 * 117.00229 * 149.99756 * 6 3 2 8 8 O 1.21511 * 119.99755 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00101 * 179.97438 * 7 6 3 10 10 C 1.46498 * 120.00377 * 0.02562 * 9 7 6 11 11 C 1.50704 * 109.47158 * 270.00187 * 10 9 7 12 12 H 1.08004 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00004 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00307 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00235 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46928 * 89.99864 * 15 13 11 17 17 H 1.48494 * 109.47365 * 210.00360 * 15 13 11 18 18 H 1.48503 * 109.46819 * 330.00533 * 15 13 11 19 19 C 1.46506 * 119.99868 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47289 * 89.99907 * 19 9 7 21 21 C 1.38668 * 120.41699 * 269.72232 * 20 19 9 22 22 C 1.38633 * 118.42041 * 179.78557 * 21 20 19 23 23 C 1.38224 * 119.15591 * 0.51099 * 22 21 20 24 24 N 1.31860 * 120.76804 * 359.72581 * 23 22 21 25 25 C 1.31892 * 121.72207 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46963 * 299.99947 * 1 2 3 28 28 H 1.09006 * 109.47264 * 59.99493 * 1 2 3 29 29 H 1.09005 * 109.46963 * 240.00053 * 2 1 3 30 30 H 1.08993 * 109.47040 * 120.00276 * 2 1 3 31 31 H 1.09002 * 109.47271 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.47379 * 299.99925 * 5 3 2 33 33 H 1.09001 * 109.47488 * 60.00399 * 5 3 2 34 34 H 1.08997 * 109.46694 * 29.99578 * 10 9 7 35 35 H 1.08995 * 109.47258 * 149.99854 * 10 9 7 36 36 H 0.96996 * 120.00505 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47060 * 210.00357 * 19 9 7 38 38 H 1.09004 * 109.47073 * 329.99846 * 19 9 7 39 39 H 1.08000 * 120.79413 * 0.02562 * 21 20 19 40 40 H 1.07992 * 120.42251 * 180.21754 * 22 21 20 41 41 H 1.07998 * 119.61684 * 179.75282 * 23 22 21 42 42 H 1.07992 * 119.61024 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 8 1.6559 2.0917 -1.2406 7 6 1.4461 3.4209 -1.1956 8 8 1.5809 4.0220 -0.1482 9 7 1.0877 4.0848 -2.3123 10 6 0.9258 3.3602 -3.5752 11 6 2.2394 3.3375 -4.3134 12 1 3.1080 3.8155 -3.8849 13 6 2.3325 2.7066 -5.5358 14 7 1.2750 2.1242 -6.0574 15 14 3.9606 2.6791 -6.4512 16 1 4.7334 1.4761 -6.0506 17 1 3.7057 2.6395 -7.9136 18 1 4.7370 3.9001 -6.1170 19 6 0.8600 5.5312 -2.2634 20 6 2.1511 6.2530 -2.5517 21 6 3.0098 6.5958 -1.5182 22 6 4.1885 7.2552 -1.8309 23 6 4.4616 7.5563 -3.1521 24 7 3.6191 7.2192 -4.1088 25 6 2.4912 6.5871 -3.8486 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9282 2.4719 0.1262 32 1 3.8532 0.9569 1.0570 33 1 3.9995 0.9053 -0.7162 34 1 0.6070 2.3384 -3.3694 35 1 0.1740 3.8592 -4.1866 36 1 1.3405 1.6800 -6.9172 37 1 0.1149 5.8072 -3.0095 38 1 0.5018 5.8093 -1.2721 39 1 2.7680 6.3514 -0.4944 40 1 4.8823 7.5342 -1.0518 41 1 5.3758 8.0734 -3.4036 42 1 1.8258 6.3277 -4.6587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195090488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:56 Heat of formation + Delta-G solvation = -57.030531 kcal Electronic energy + Delta-G solvation = -24413.795559 eV Core-core repulsion = 20972.740658 eV Total energy + Delta-G solvation = -3441.054901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10556 -39.45949 -36.96243 -35.11410 -33.67089 -32.81221 -31.93177 -31.09472 -29.71503 -27.55630 -26.00179 -23.77349 -23.16043 -22.86469 -22.05653 -20.79838 -19.62606 -17.33630 -16.74343 -16.64611 -16.23631 -15.74155 -15.49979 -14.80526 -14.72394 -14.22341 -13.96480 -13.61951 -13.49915 -13.12416 -13.02144 -12.68569 -12.57075 -12.36900 -11.99490 -11.76720 -11.59656 -11.49148 -11.35151 -11.24186 -10.92471 -10.85028 -10.70582 -10.39592 -10.17006 -9.96378 -9.75561 -9.72541 -9.35612 -9.02839 -8.59939 -8.45562 -7.86481 -6.10711 -4.15018 1.50459 1.74237 2.97278 3.29392 3.35966 3.43249 3.57515 4.26650 4.40083 4.75423 4.88562 4.93266 5.15444 5.16534 5.24401 5.30328 5.32845 5.39632 5.48866 5.53556 5.66750 5.71904 5.77058 5.89141 5.99855 6.03615 6.05604 6.12593 6.24270 6.29401 6.38913 6.46222 6.52339 6.63908 6.74886 7.08260 7.15917 7.26396 7.49249 7.83660 8.12832 8.22981 8.43815 8.85870 9.10286 9.51595 10.96840 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.007402 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.287967 B = 3782.011009 C = 5268.772564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.102 3.898 4 H 0.080 0.920 5 C -0.168 4.168 6 O -0.341 6.341 7 C 0.652 3.348 8 O -0.606 6.606 9 N -0.577 5.577 10 C 0.242 3.758 11 C -0.523 4.523 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.181 3.819 20 C -0.147 4.147 21 C -0.056 4.056 22 C -0.188 4.188 23 C 0.091 3.909 24 N -0.492 5.492 25 C 0.142 3.858 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 2.700 10.420 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.098 0.902 5 C -0.225 4.225 6 O -0.254 6.254 7 C 0.407 3.593 8 O -0.499 6.499 9 N -0.314 5.314 10 C 0.123 3.877 11 C -0.562 4.562 12 H 0.075 0.925 13 C -0.135 4.135 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.211 1.211 18 H -0.196 1.196 19 C 0.058 3.942 20 C -0.151 4.151 21 C -0.083 4.083 22 C -0.208 4.208 23 C -0.066 4.066 24 N -0.200 5.200 25 C -0.016 4.016 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.603 2.902 9.704 10.147 hybrid contribution 0.991 -0.417 0.269 1.108 sum 1.594 2.485 9.973 10.401 Atomic orbital electron populations 1.21746 0.95339 1.01508 1.02360 1.21651 0.96775 0.94419 1.02892 1.22556 0.94904 0.92645 0.85353 0.90183 1.22177 0.95286 1.02961 1.02100 1.86490 1.81336 1.20702 1.36898 1.18036 0.76300 0.81060 0.83861 1.90836 1.59841 1.68606 1.30601 1.47147 1.68503 1.06438 1.09267 1.19482 0.97475 0.92398 0.78310 1.21373 0.95872 1.35415 1.03516 0.92476 1.24843 0.96451 0.94986 0.97181 1.69912 1.28686 1.35935 1.18610 0.86619 0.84168 0.78643 0.78929 1.20761 1.21091 1.19572 1.20112 0.92937 0.78410 1.02767 1.21255 0.99362 0.99735 0.94707 1.21575 0.92917 0.93880 0.99920 1.22014 0.98465 1.02330 0.98023 1.22656 0.97999 0.96863 0.89042 1.67713 1.03591 1.12043 1.36650 1.22742 0.92751 0.90814 0.95259 0.92717 0.93130 0.91721 0.90572 0.90461 0.92030 0.91517 0.91580 0.93727 0.94540 0.92695 0.89133 0.89745 0.84807 0.85601 0.83623 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.81 37.16 0.36 -1.63 16 2 C -0.12 -1.60 5.65 -26.73 -0.15 -1.76 16 3 C 0.10 1.65 2.56 -26.73 -0.07 1.58 16 4 H 0.08 1.31 7.16 -51.93 -0.37 0.94 16 5 C -0.17 -2.51 9.55 37.15 0.35 -2.16 16 6 O -0.34 -7.02 8.25 -40.31 -0.33 -7.36 16 7 C 0.65 13.85 8.37 54.05 0.45 14.30 16 8 O -0.61 -12.89 14.83 -19.28 -0.29 -13.17 16 9 N -0.58 -12.04 2.44 -182.24 -0.44 -12.49 16 10 C 0.24 5.78 5.21 -5.19 -0.03 5.75 16 11 C -0.52 -13.75 8.83 -34.44 -0.30 -14.06 16 12 H 0.06 1.59 7.58 -52.48 -0.40 1.19 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.18 3.16 5.60 -5.19 -0.03 3.14 16 20 C -0.15 -2.65 5.48 -104.49 -0.57 -3.22 16 21 C -0.06 -0.95 9.86 -39.28 -0.39 -1.33 16 22 C -0.19 -2.85 10.11 -39.44 -0.40 -3.25 16 23 C 0.09 1.47 11.18 -17.54 -0.20 1.28 16 24 N -0.49 -9.34 10.36 -13.26 -0.14 -9.48 16 25 C 0.14 2.68 10.08 -17.55 -0.18 2.51 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.04 1.16 7.37 -51.93 -0.38 0.77 16 35 H 0.04 0.88 7.89 -51.93 -0.41 0.47 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 38 H 0.08 1.38 7.37 -51.93 -0.38 1.00 16 39 H 0.13 2.20 7.71 -52.49 -0.40 1.80 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -30.61 358.01 -7.85 -38.47 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.53 Total: 3.37 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.24 Total: 2.88 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.15 Total: -46.18 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.62 Total: -20.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.61 -7.85 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195090488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.564 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds