Wall clock time and date at job start Tue Mar 31 2020 07:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47377 * 2 1 4 4 H 1.09001 * 109.46649 * 54.99987 * 3 2 1 5 5 C 1.52994 * 109.47050 * 175.00101 * 3 2 1 6 6 O 1.45198 * 109.47121 * 295.00410 * 3 2 1 7 7 C 1.34634 * 117.00229 * 149.99756 * 6 3 2 8 8 O 1.21511 * 119.99755 * 0.02562 * 7 6 3 9 9 N 1.34774 * 120.00101 * 179.97438 * 7 6 3 10 10 C 1.46498 * 120.00377 * 0.02562 * 9 7 6 11 11 C 1.50704 * 109.47158 * 270.00187 * 10 9 7 12 12 H 1.08004 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00004 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00307 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00235 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.46928 * 89.99864 * 15 13 11 17 17 H 1.48494 * 109.47365 * 210.00360 * 15 13 11 18 18 H 1.48503 * 109.46819 * 330.00533 * 15 13 11 19 19 C 1.46506 * 119.99868 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47289 * 89.99907 * 19 9 7 21 21 C 1.38668 * 120.41699 * 269.72232 * 20 19 9 22 22 C 1.38633 * 118.42041 * 179.78557 * 21 20 19 23 23 C 1.38224 * 119.15591 * 0.51099 * 22 21 20 24 24 N 1.31860 * 120.76804 * 359.72581 * 23 22 21 25 25 C 1.31892 * 121.72207 * 0.02562 * 24 23 22 26 26 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46963 * 299.99947 * 1 2 3 28 28 H 1.09006 * 109.47264 * 59.99493 * 1 2 3 29 29 H 1.09005 * 109.46963 * 240.00053 * 2 1 3 30 30 H 1.08993 * 109.47040 * 120.00276 * 2 1 3 31 31 H 1.09002 * 109.47271 * 180.02562 * 5 3 2 32 32 H 1.08998 * 109.47379 * 299.99925 * 5 3 2 33 33 H 1.09001 * 109.47488 * 60.00399 * 5 3 2 34 34 H 1.08997 * 109.46694 * 29.99578 * 10 9 7 35 35 H 1.08995 * 109.47258 * 149.99854 * 10 9 7 36 36 H 0.96996 * 120.00505 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47060 * 210.00357 * 19 9 7 38 38 H 1.09004 * 109.47073 * 329.99846 * 19 9 7 39 39 H 1.08000 * 120.79413 * 0.02562 * 21 20 19 40 40 H 1.07992 * 120.42251 * 180.21754 * 22 21 20 41 41 H 1.07998 * 119.61684 * 179.75282 * 23 22 21 42 42 H 1.07992 * 119.61024 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1257 6 8 1.6559 2.0917 -1.2406 7 6 1.4461 3.4209 -1.1956 8 8 1.5809 4.0220 -0.1482 9 7 1.0877 4.0848 -2.3123 10 6 0.9258 3.3602 -3.5752 11 6 2.2394 3.3375 -4.3134 12 1 3.1080 3.8155 -3.8849 13 6 2.3325 2.7066 -5.5358 14 7 1.2750 2.1242 -6.0574 15 14 3.9606 2.6791 -6.4512 16 1 4.7334 1.4761 -6.0506 17 1 3.7057 2.6395 -7.9136 18 1 4.7370 3.9001 -6.1170 19 6 0.8600 5.5312 -2.2634 20 6 2.1511 6.2530 -2.5517 21 6 3.0098 6.5958 -1.5182 22 6 4.1885 7.2552 -1.8309 23 6 4.4616 7.5563 -3.1521 24 7 3.6191 7.2192 -4.1088 25 6 2.4912 6.5871 -3.8486 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.9282 2.4719 0.1262 32 1 3.8532 0.9569 1.0570 33 1 3.9995 0.9053 -0.7162 34 1 0.6070 2.3384 -3.3694 35 1 0.1740 3.8592 -4.1866 36 1 1.3405 1.6800 -6.9172 37 1 0.1149 5.8072 -3.0095 38 1 0.5018 5.8093 -1.2721 39 1 2.7680 6.3514 -0.4944 40 1 4.8823 7.5342 -1.0518 41 1 5.3758 8.0734 -3.4036 42 1 1.8258 6.3277 -4.6587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195090488.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:55 Heat of formation + Delta-G solvation = -73.588233 kcal Electronic energy + Delta-G solvation = -24414.513555 eV Core-core repulsion = 20972.740658 eV Total energy + Delta-G solvation = -3441.772897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.62580 -40.85459 -38.44087 -36.78067 -34.98332 -34.71339 -33.42194 -32.45836 -30.88846 -29.43293 -27.51015 -25.19494 -24.72813 -24.35378 -23.42668 -22.08134 -21.11609 -19.03259 -18.59996 -18.09187 -17.77316 -17.15163 -17.01766 -16.63894 -16.06029 -15.80315 -15.19426 -14.92913 -14.87591 -14.54024 -14.37155 -14.21087 -13.99204 -13.88639 -13.50122 -13.31057 -13.21558 -13.02974 -12.73681 -12.65685 -12.54502 -12.43100 -12.10180 -12.02251 -11.72178 -11.60584 -11.52248 -11.24837 -10.71673 -10.58245 -10.41041 -9.92331 -9.56594 -8.19312 -6.28435 0.17536 0.40910 1.34402 1.37574 1.45670 1.52533 1.93015 2.38895 2.90601 3.13298 3.22946 3.61569 3.75725 3.90915 3.95107 3.98917 4.11654 4.13154 4.17378 4.37158 4.45756 4.58127 4.63467 4.66410 4.71031 4.75735 4.86830 4.92877 4.96484 5.03059 5.13626 5.17729 5.22544 5.24306 5.37936 5.40569 5.61939 5.66752 5.77694 5.84906 6.08458 6.49505 6.79597 7.09982 7.36014 7.49429 8.87506 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.007402 C = 0.005313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.287967 B = 3782.011009 C = 5268.772564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.079 0.921 5 C -0.162 4.162 6 O -0.364 6.364 7 C 0.648 3.352 8 O -0.609 6.609 9 N -0.580 5.580 10 C 0.261 3.739 11 C -0.518 4.518 12 H 0.041 0.959 13 C 0.027 3.973 14 N -0.918 5.918 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.277 1.277 18 H -0.279 1.279 19 C 0.178 3.822 20 C -0.157 4.157 21 C -0.065 4.065 22 C -0.177 4.177 23 C 0.086 3.914 24 N -0.519 5.519 25 C 0.123 3.877 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.039 0.961 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.032 0.968 36 H 0.266 0.734 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.137 0.863 40 H 0.164 0.836 41 H 0.180 0.820 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 2.680 11.864 12.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.036 3.964 4 H 0.097 0.903 5 C -0.220 4.220 6 O -0.278 6.278 7 C 0.403 3.597 8 O -0.503 6.503 9 N -0.317 5.317 10 C 0.141 3.859 11 C -0.557 4.557 12 H 0.059 0.941 13 C -0.173 4.173 14 N -0.558 5.558 15 Si 0.767 3.233 16 H -0.204 1.204 17 H -0.203 1.203 18 H -0.204 1.204 19 C 0.056 3.944 20 C -0.160 4.160 21 C -0.091 4.091 22 C -0.196 4.196 23 C -0.071 4.071 24 N -0.228 5.228 25 C -0.034 4.034 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.155 0.845 40 H 0.181 0.819 41 H 0.197 0.803 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.897 2.885 11.160 11.682 hybrid contribution 0.626 -0.382 -0.085 0.738 sum 2.523 2.503 11.076 11.632 Atomic orbital electron populations 1.21731 0.95280 1.02545 1.01225 1.21707 0.96827 0.92539 1.04115 1.22982 0.95896 0.93842 0.83716 0.90307 1.22164 0.94176 1.01895 1.03732 1.86490 1.81335 1.20439 1.39496 1.18151 0.76249 0.81416 0.83840 1.90810 1.60154 1.68821 1.30498 1.47130 1.68640 1.07646 1.08242 1.19036 0.96176 0.91475 0.79263 1.21415 0.96100 1.34613 1.03564 0.94092 1.25425 0.98848 0.94993 0.97989 1.69982 1.30001 1.36737 1.19044 0.85816 0.81075 0.78078 0.78304 1.20432 1.20260 1.20430 1.20322 0.93533 0.76535 1.04013 1.21248 0.99771 1.00224 0.94752 1.21748 0.93492 0.94141 0.99727 1.22400 0.98080 1.00466 0.98680 1.23265 0.98450 0.96341 0.89062 1.67682 1.04087 1.12822 1.38222 1.22623 0.93237 0.92098 0.95408 0.90601 0.92189 0.94901 0.91691 0.86691 0.94157 0.87711 0.92445 0.96116 0.94952 0.92507 0.87679 0.88478 0.84468 0.81854 0.80294 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.81 71.98 0.71 -3.07 16 2 C -0.11 -2.88 5.65 30.59 0.17 -2.71 16 3 C 0.09 2.88 2.56 30.59 0.08 2.96 16 4 H 0.08 2.50 7.16 -2.39 -0.02 2.48 16 5 C -0.16 -4.65 9.55 71.98 0.69 -3.96 16 6 O -0.36 -15.21 8.25 -55.44 -0.46 -15.66 16 7 C 0.65 27.75 8.37 129.79 1.09 28.84 16 8 O -0.61 -25.71 14.83 19.81 0.29 -25.41 16 9 N -0.58 -24.60 2.44 -960.91 -2.34 -26.94 16 10 C 0.26 12.79 5.21 85.63 0.45 13.23 16 11 C -0.52 -27.74 8.83 25.60 0.23 -27.51 16 12 H 0.04 2.31 7.58 -2.91 -0.02 2.29 16 13 C 0.03 1.50 5.46 84.65 0.46 1.96 16 14 N -0.92 -51.85 13.29 21.44 0.28 -51.56 16 15 Si 0.94 44.62 29.54 68.60 2.03 46.65 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 C 0.18 6.25 5.60 85.63 0.48 6.73 16 20 C -0.16 -5.62 5.48 -19.78 -0.11 -5.72 16 21 C -0.06 -2.09 9.86 22.47 0.22 -1.87 16 22 C -0.18 -4.91 10.11 22.36 0.23 -4.69 16 23 C 0.09 2.58 11.18 84.69 0.95 3.53 16 24 N -0.52 -19.48 10.36 -195.85 -2.03 -21.51 16 25 C 0.12 4.72 10.08 84.67 0.85 5.57 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.03 1.02 7.82 -2.38 -0.02 1.00 16 29 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.02 1.12 7.37 -2.39 -0.02 1.10 16 35 H 0.03 1.61 7.89 -2.39 -0.02 1.59 16 36 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.11 3.30 7.85 -2.39 -0.02 3.28 16 38 H 0.10 3.14 7.37 -2.38 -0.02 3.12 16 39 H 0.14 4.32 7.71 -2.91 -0.02 4.30 16 40 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 41 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.15 5.75 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -66.07 358.01 5.25 -60.82 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.99 Total: 20.33 kcal Atomic # 6 Polarization: 6.80 SS G_CDS: 6.48 Total: 13.29 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -4.09 Total: -100.01 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.16 Total: -41.08 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.07 5.25 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195090488.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.770 kcal (2) G-P(sol) polarization free energy of solvation -66.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds