Wall clock time and date at job start Tue Mar 31 2020 07:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47448 * 2 1 4 4 H 1.08998 * 109.46862 * 305.00378 * 3 2 1 5 5 C 1.52997 * 109.47482 * 184.99813 * 3 2 1 6 6 O 1.45206 * 109.47047 * 64.99607 * 3 2 1 7 7 C 1.34638 * 116.99739 * 210.00188 * 6 3 2 8 8 O 1.21510 * 120.00256 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99872 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99766 * 0.02562 * 9 7 6 11 11 C 1.50692 * 109.47044 * 89.99794 * 10 9 7 12 12 H 1.07998 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00322 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99812 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47248 * 90.00127 * 15 13 11 17 17 H 1.48494 * 109.47286 * 210.00342 * 15 13 11 18 18 H 1.48501 * 109.47483 * 330.00322 * 15 13 11 19 19 C 1.46493 * 120.00099 * 180.02562 * 9 7 6 20 20 C 1.50699 * 109.47549 * 89.99913 * 19 9 7 21 21 C 1.38670 * 120.41818 * 269.72411 * 20 19 9 22 22 C 1.38630 * 118.41887 * 179.77693 * 21 20 19 23 23 C 1.38229 * 119.16166 * 0.51547 * 22 21 20 24 24 N 1.31854 * 120.76179 * 359.71988 * 23 22 21 25 25 C 1.31889 * 121.72457 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47346 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.46964 * 60.00529 * 1 2 3 29 29 H 1.09001 * 109.47166 * 239.99233 * 2 1 3 30 30 H 1.09004 * 109.46717 * 120.00185 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 33 33 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46758 * 210.00259 * 10 9 7 35 35 H 1.09000 * 109.46815 * 329.99776 * 10 9 7 36 36 H 0.96997 * 119.99833 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47430 * 210.00310 * 19 9 7 38 38 H 1.09004 * 109.47111 * 329.99675 * 19 9 7 39 39 H 1.07994 * 120.79553 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.42118 * 180.21694 * 22 21 20 41 41 H 1.08001 * 119.61656 * 179.74798 * 23 22 21 42 42 H 1.08004 * 119.61190 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 1.6558 2.0916 1.2407 7 6 1.4461 3.4208 1.1956 8 8 1.5800 4.0218 0.1480 9 7 1.0877 4.0848 2.3124 10 6 0.9268 3.3603 3.5755 11 6 2.2407 3.3387 4.3130 12 1 3.1087 3.8172 3.8841 13 6 2.3345 2.7090 5.5361 14 7 1.2774 2.1267 6.0587 15 14 3.9630 2.6828 6.4507 16 1 4.0531 3.8722 7.3353 17 1 4.0503 1.4481 7.2710 18 1 5.0805 2.7075 5.4729 19 6 0.8590 5.5309 2.2632 20 6 -0.5886 5.8000 1.9418 21 6 -1.0025 5.9324 0.6249 22 6 -2.3446 6.1748 0.3764 23 6 -3.2176 6.2865 1.4424 24 7 -2.7875 6.1598 2.6824 25 6 -1.5190 5.9239 2.9558 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.8532 0.9569 -1.0570 32 1 3.9994 0.9052 0.7162 33 1 3.9282 2.4719 -0.1261 34 1 0.1749 3.8589 4.1871 35 1 0.6086 2.3382 3.3701 36 1 1.3435 1.6834 6.9189 37 1 1.1043 5.9707 3.2298 38 1 1.4905 5.9727 1.4923 39 1 -0.2969 5.8446 -0.1879 40 1 -2.7029 6.2799 -0.6370 41 1 -4.2640 6.4794 1.2574 42 1 -1.2039 5.8265 3.9842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195090489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:59 Heat of formation + Delta-G solvation = -58.864859 kcal Electronic energy + Delta-G solvation = -24083.467147 eV Core-core repulsion = 20642.332703 eV Total energy + Delta-G solvation = -3441.134443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19133 -39.58586 -36.97964 -35.12297 -33.68606 -32.91120 -32.07758 -31.25271 -29.71786 -27.54679 -26.09497 -23.78111 -23.41543 -22.83717 -22.21535 -20.81187 -19.61648 -17.36404 -16.98898 -16.45647 -16.36659 -15.90221 -15.52000 -15.03340 -14.72531 -14.23717 -13.94615 -13.79847 -13.52691 -13.27547 -13.09850 -12.76614 -12.68065 -12.42716 -12.11568 -11.75921 -11.63085 -11.50054 -11.32915 -11.15232 -10.96865 -10.92314 -10.73220 -10.39956 -10.19937 -9.97062 -9.83414 -9.74277 -9.54492 -9.23624 -8.81511 -8.51546 -7.89091 -6.13116 -4.19156 1.27715 1.51479 2.96588 3.25373 3.32502 3.36204 3.56080 4.05504 4.35229 4.65970 4.74159 4.93362 5.02264 5.12844 5.16777 5.21405 5.23634 5.30088 5.31336 5.51784 5.58200 5.71358 5.77300 5.84218 5.90991 6.02822 6.04747 6.10708 6.13209 6.28496 6.34003 6.39098 6.46751 6.55550 6.65507 6.92704 7.08417 7.27167 7.48670 7.80250 8.10387 8.18240 8.23315 8.82225 9.09796 9.47286 10.94417 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.006831 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.727034 B = 4097.955342 C = 5978.138406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.080 0.920 5 C -0.168 4.168 6 O -0.341 6.341 7 C 0.652 3.348 8 O -0.606 6.606 9 N -0.576 5.576 10 C 0.244 3.756 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.178 3.822 20 C -0.150 4.150 21 C -0.054 4.054 22 C -0.183 4.183 23 C 0.091 3.909 24 N -0.490 5.490 25 C 0.118 3.882 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 2.078 -11.375 11.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.098 0.902 5 C -0.225 4.225 6 O -0.254 6.254 7 C 0.407 3.593 8 O -0.499 6.499 9 N -0.312 5.312 10 C 0.125 3.875 11 C -0.572 4.572 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.054 3.946 20 C -0.153 4.153 21 C -0.081 4.081 22 C -0.202 4.202 23 C -0.066 4.066 24 N -0.198 5.198 25 C -0.039 4.039 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.714 2.140 -10.831 11.648 hybrid contribution 1.485 -0.227 -0.161 1.510 sum -2.229 1.913 -10.992 11.377 Atomic orbital electron populations 1.21745 0.95393 1.01505 1.02322 1.21650 0.96724 0.94441 1.02911 1.22561 0.94969 0.92632 0.85329 0.90239 1.22183 0.95194 1.03029 1.02124 1.86491 1.81369 1.20634 1.36932 1.18045 0.76282 0.81095 0.83855 1.90832 1.60218 1.68489 1.30398 1.47109 1.68136 1.06822 1.09149 1.19433 0.97378 0.92357 0.78303 1.21433 0.96037 1.35969 1.03726 0.92229 1.24908 0.96724 0.94941 0.97170 1.69926 1.28832 1.35710 1.18463 0.86522 0.83808 0.77564 0.79698 1.20541 1.21106 1.19885 1.20120 0.90225 0.80643 1.03585 1.21449 0.98716 1.00864 0.94280 1.21669 0.95892 0.93609 0.96901 1.22103 0.94455 1.03167 1.00520 1.22708 0.99878 0.95940 0.88075 1.67716 1.17099 1.12309 1.22678 1.22833 0.87823 0.93354 0.99939 0.92690 0.91809 0.93167 0.90428 0.90538 0.91525 0.91518 0.91929 0.94596 0.93876 0.92591 0.88426 0.89561 0.84428 0.85261 0.83269 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.81 37.16 0.36 -1.70 16 2 C -0.12 -1.62 5.65 -26.74 -0.15 -1.78 16 3 C 0.10 1.66 2.56 -26.74 -0.07 1.59 16 4 H 0.08 1.32 7.16 -51.93 -0.37 0.94 16 5 C -0.17 -2.48 9.55 37.16 0.35 -2.12 16 6 O -0.34 -7.09 8.25 -40.32 -0.33 -7.43 16 7 C 0.65 13.98 8.37 54.06 0.45 14.43 16 8 O -0.61 -12.95 14.84 -19.28 -0.29 -13.23 16 9 N -0.58 -12.19 2.44 -182.25 -0.44 -12.64 16 10 C 0.24 5.94 5.17 -5.20 -0.03 5.91 16 11 C -0.53 -14.09 9.39 -34.44 -0.32 -14.41 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 15 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.18 3.14 5.56 -5.20 -0.03 3.11 16 20 C -0.15 -2.47 5.48 -104.49 -0.57 -3.05 16 21 C -0.05 -0.82 9.86 -39.28 -0.39 -1.21 16 22 C -0.18 -2.40 10.11 -39.44 -0.40 -2.79 16 23 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 24 N -0.49 -8.03 10.36 -13.25 -0.14 -8.16 16 25 C 0.12 1.96 10.86 -17.55 -0.19 1.77 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.03 7.82 -51.93 -0.41 0.62 16 28 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.04 1.15 7.37 -51.93 -0.38 0.77 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 37 H 0.10 1.64 8.02 -51.93 -0.42 1.23 16 38 H 0.09 1.47 7.37 -51.93 -0.38 1.09 16 39 H 0.14 2.09 7.71 -52.49 -0.40 1.69 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.16 2.56 8.06 -52.48 -0.42 2.14 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -30.36 359.86 -7.89 -38.25 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.56 Total: 3.76 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.27 Total: 2.46 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.15 Total: -45.04 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.62 Total: -20.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.36 -7.89 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195090489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.616 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds