Wall clock time and date at job start Tue Mar 31 2020 07:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47448 * 2 1 4 4 H 1.08998 * 109.46862 * 305.00378 * 3 2 1 5 5 C 1.52997 * 109.47482 * 184.99813 * 3 2 1 6 6 O 1.45206 * 109.47047 * 64.99607 * 3 2 1 7 7 C 1.34638 * 116.99739 * 210.00188 * 6 3 2 8 8 O 1.21510 * 120.00256 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99872 * 180.02562 * 7 6 3 10 10 C 1.46504 * 119.99766 * 0.02562 * 9 7 6 11 11 C 1.50692 * 109.47044 * 89.99794 * 10 9 7 12 12 H 1.07998 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99653 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00322 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99812 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47248 * 90.00127 * 15 13 11 17 17 H 1.48494 * 109.47286 * 210.00342 * 15 13 11 18 18 H 1.48501 * 109.47483 * 330.00322 * 15 13 11 19 19 C 1.46493 * 120.00099 * 180.02562 * 9 7 6 20 20 C 1.50699 * 109.47549 * 89.99913 * 19 9 7 21 21 C 1.38670 * 120.41818 * 269.72411 * 20 19 9 22 22 C 1.38630 * 118.41887 * 179.77693 * 21 20 19 23 23 C 1.38229 * 119.16166 * 0.51547 * 22 21 20 24 24 N 1.31854 * 120.76179 * 359.71988 * 23 22 21 25 25 C 1.31889 * 121.72457 * 0.02562 * 24 23 22 26 26 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47346 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.46964 * 60.00529 * 1 2 3 29 29 H 1.09001 * 109.47166 * 239.99233 * 2 1 3 30 30 H 1.09004 * 109.46717 * 120.00185 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 5 3 2 32 32 H 1.09001 * 109.46832 * 299.99974 * 5 3 2 33 33 H 1.09004 * 109.47261 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46758 * 210.00259 * 10 9 7 35 35 H 1.09000 * 109.46815 * 329.99776 * 10 9 7 36 36 H 0.96997 * 119.99833 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47430 * 210.00310 * 19 9 7 38 38 H 1.09004 * 109.47111 * 329.99675 * 19 9 7 39 39 H 1.07994 * 120.79553 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.42118 * 180.21694 * 22 21 20 41 41 H 1.08001 * 119.61656 * 179.74798 * 23 22 21 42 42 H 1.08004 * 119.61190 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 6 3.5648 1.4442 -0.1257 6 8 1.6558 2.0916 1.2407 7 6 1.4461 3.4208 1.1956 8 8 1.5800 4.0218 0.1480 9 7 1.0877 4.0848 2.3124 10 6 0.9268 3.3603 3.5755 11 6 2.2407 3.3387 4.3130 12 1 3.1087 3.8172 3.8841 13 6 2.3345 2.7090 5.5361 14 7 1.2774 2.1267 6.0587 15 14 3.9630 2.6828 6.4507 16 1 4.0531 3.8722 7.3353 17 1 4.0503 1.4481 7.2710 18 1 5.0805 2.7075 5.4729 19 6 0.8590 5.5309 2.2632 20 6 -0.5886 5.8000 1.9418 21 6 -1.0025 5.9324 0.6249 22 6 -2.3446 6.1748 0.3764 23 6 -3.2176 6.2865 1.4424 24 7 -2.7875 6.1598 2.6824 25 6 -1.5190 5.9239 2.9558 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5140 -0.8899 30 1 1.8932 -0.5139 0.8900 31 1 3.8532 0.9569 -1.0570 32 1 3.9994 0.9052 0.7162 33 1 3.9282 2.4719 -0.1261 34 1 0.1749 3.8589 4.1871 35 1 0.6086 2.3382 3.3701 36 1 1.3435 1.6834 6.9189 37 1 1.1043 5.9707 3.2298 38 1 1.4905 5.9727 1.4923 39 1 -0.2969 5.8446 -0.1879 40 1 -2.7029 6.2799 -0.6370 41 1 -4.2640 6.4794 1.2574 42 1 -1.2039 5.8265 3.9842 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195090489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:58 Heat of formation + Delta-G solvation = -75.251552 kcal Electronic energy + Delta-G solvation = -24084.177727 eV Core-core repulsion = 20642.332703 eV Total energy + Delta-G solvation = -3441.845024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65566 -40.92199 -38.46722 -36.79984 -35.01884 -34.75600 -33.47922 -32.52780 -30.90260 -29.41071 -27.58631 -25.24574 -24.80240 -24.34680 -23.49033 -22.09973 -21.12185 -19.06953 -18.62743 -18.08066 -17.78746 -17.18889 -17.09871 -16.65690 -16.13487 -15.78576 -15.19847 -15.09754 -14.82876 -14.59264 -14.39983 -14.24213 -14.00320 -13.93572 -13.51045 -13.46758 -13.16875 -12.83021 -12.70079 -12.67470 -12.60400 -12.45369 -12.12384 -12.04870 -11.76294 -11.62075 -11.54231 -11.26870 -10.78067 -10.59536 -10.47107 -10.01905 -9.61875 -8.19845 -6.33885 0.08443 0.32222 1.41257 1.41878 1.48096 1.54087 1.89723 2.40393 2.84273 3.10991 3.19559 3.52953 3.74480 3.85517 3.86853 3.97325 4.08262 4.08926 4.11723 4.33902 4.43522 4.57410 4.63105 4.65381 4.70359 4.73384 4.80590 4.86110 4.95087 4.99653 5.10807 5.17780 5.19287 5.21049 5.34080 5.35394 5.59355 5.62857 5.75417 5.76982 6.05266 6.47460 6.76192 7.00330 7.32700 7.46751 8.86966 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.006831 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.727034 B = 4097.955342 C = 5978.138406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.077 0.923 5 C -0.162 4.162 6 O -0.365 6.365 7 C 0.648 3.352 8 O -0.609 6.609 9 N -0.580 5.580 10 C 0.266 3.734 11 C -0.543 4.543 12 H 0.053 0.947 13 C 0.020 3.980 14 N -0.921 5.921 15 Si 0.960 3.040 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.272 1.272 19 C 0.178 3.822 20 C -0.161 4.161 21 C -0.062 4.062 22 C -0.170 4.170 23 C 0.091 3.909 24 N -0.511 5.511 25 C 0.103 3.897 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.013 0.987 36 H 0.267 0.733 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.137 0.863 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 1.935 -12.959 13.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C 0.035 3.965 4 H 0.095 0.905 5 C -0.220 4.220 6 O -0.278 6.278 7 C 0.403 3.597 8 O -0.503 6.503 9 N -0.316 5.316 10 C 0.145 3.855 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.180 4.180 14 N -0.561 5.561 15 Si 0.785 3.215 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.197 1.197 19 C 0.056 3.944 20 C -0.165 4.165 21 C -0.089 4.089 22 C -0.189 4.189 23 C -0.066 4.066 24 N -0.220 5.220 25 C -0.054 4.054 26 H 0.095 0.905 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.031 0.969 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.155 0.845 40 H 0.185 0.815 41 H 0.204 0.796 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.699 2.011 -12.431 13.124 hybrid contribution 1.405 -0.185 0.223 1.434 sum -2.294 1.826 -12.208 12.555 Atomic orbital electron populations 1.21728 0.95562 1.02515 1.00964 1.21711 0.96567 0.92630 1.04261 1.23003 0.96166 0.93766 0.83608 0.90463 1.22169 0.93853 1.02081 1.03858 1.86493 1.81386 1.20349 1.39608 1.18149 0.76269 0.81467 0.83814 1.90804 1.60532 1.68700 1.30241 1.47107 1.68343 1.08026 1.08166 1.18928 0.96245 0.91016 0.79286 1.21630 0.96458 1.35931 1.04165 0.92898 1.25679 0.99972 0.94450 0.97938 1.70032 1.30743 1.36365 1.18917 0.85529 0.79644 0.77895 0.78436 1.19505 1.20642 1.19724 1.20226 0.91588 0.78705 1.03925 1.21281 0.97731 1.02325 0.95129 1.21783 0.97168 0.93842 0.96084 1.22478 0.93163 1.00958 1.02298 1.23372 1.01709 0.94310 0.87185 1.67726 1.16724 1.13106 1.24481 1.22747 0.88394 0.94454 0.99764 0.90496 0.95383 0.92252 0.86479 0.91568 0.87679 0.92185 0.93963 0.95588 0.96853 0.92374 0.88272 0.89030 0.84515 0.81477 0.79599 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.81 71.98 0.71 -3.25 16 2 C -0.11 -2.94 5.65 30.59 0.17 -2.77 16 3 C 0.09 2.89 2.56 30.59 0.08 2.97 16 4 H 0.08 2.50 7.16 -2.39 -0.02 2.49 16 5 C -0.16 -4.63 9.55 71.98 0.69 -3.94 16 6 O -0.36 -15.60 8.25 -55.47 -0.46 -16.06 16 7 C 0.65 28.46 8.37 129.79 1.09 29.55 16 8 O -0.61 -26.22 14.84 19.81 0.29 -25.93 16 9 N -0.58 -25.45 2.44 -960.93 -2.34 -27.79 16 10 C 0.27 13.52 5.17 85.63 0.44 13.96 16 11 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 12 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 13 C 0.02 1.07 5.46 84.66 0.46 1.53 16 14 N -0.92 -52.66 13.29 21.45 0.28 -52.38 16 15 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.18 6.49 5.56 85.63 0.48 6.96 16 20 C -0.16 -5.41 5.48 -19.78 -0.11 -5.52 16 21 C -0.06 -1.84 9.86 22.47 0.22 -1.61 16 22 C -0.17 -4.02 10.11 22.36 0.23 -3.79 16 23 C 0.09 2.30 11.18 84.69 0.95 3.24 16 24 N -0.51 -16.51 10.36 -195.84 -2.03 -18.54 16 25 C 0.10 3.52 10.86 84.67 0.92 4.44 16 26 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.03 0.91 7.82 -2.39 -0.02 0.90 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 35 H 0.01 0.76 7.37 -2.39 -0.02 0.74 16 36 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.10 3.50 8.02 -2.39 -0.02 3.48 16 38 H 0.09 3.20 7.37 -2.39 -0.02 3.18 16 39 H 0.14 4.04 7.71 -2.91 -0.02 4.02 16 40 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.15 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -66.57 359.86 5.32 -61.25 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.99 Total: 21.99 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.56 Total: 12.53 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -4.09 Total: -98.72 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.16 Total: -41.99 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -66.57 5.32 -61.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195090489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.006 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds