Wall clock time and date at job start Tue Mar 31 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47159 * 2 1 4 4 H 1.09000 * 109.47334 * 305.00062 * 3 2 1 5 5 C 1.50699 * 109.47250 * 184.99633 * 3 2 1 6 6 H 1.07997 * 120.00561 * 239.99832 * 5 3 2 7 7 C 1.37879 * 119.99673 * 59.99982 * 5 3 2 8 8 N 1.31511 * 120.00081 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47036 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47044 * 119.99992 * 9 7 5 12 12 H 1.48500 * 109.47111 * 240.00022 * 9 7 5 13 13 N 1.46499 * 109.47589 * 64.99633 * 3 2 1 14 14 C 1.34777 * 120.00091 * 275.00536 * 13 3 2 15 15 O 1.21280 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99931 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47183 * 319.99498 * 16 14 13 18 18 N 1.46899 * 109.46848 * 199.99701 * 16 14 13 19 19 C 1.52994 * 109.47336 * 79.99568 * 16 14 13 20 20 C 1.50703 * 109.47043 * 184.99916 * 19 16 14 21 21 C 1.38282 * 119.97110 * 90.00303 * 20 19 16 22 22 C 1.38240 * 120.11355 * 180.02562 * 21 20 19 23 23 C 1.38169 * 120.05585 * 0.02562 * 22 21 20 24 24 C 1.38719 * 119.93968 * 359.97299 * 23 22 21 25 25 O 1.35905 * 120.05115 * 179.97438 * 24 23 22 26 26 C 1.38124 * 119.97190 * 270.27385 * 20 19 16 27 27 H 1.09009 * 109.47169 * 60.00179 * 1 2 3 28 28 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47500 * 300.00364 * 1 2 3 30 30 H 1.09003 * 109.47217 * 239.99814 * 2 1 3 31 31 H 1.09001 * 109.46432 * 120.00196 * 2 1 3 32 32 H 0.96999 * 120.00139 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00318 * 94.99670 * 13 3 2 34 34 H 1.00902 * 110.99957 * 176.04689 * 18 16 14 35 35 H 1.00899 * 111.00282 * 299.99777 * 18 16 14 36 36 H 1.08997 * 109.47092 * 65.00042 * 19 16 14 37 37 H 1.09002 * 109.47047 * 304.99835 * 19 16 14 38 38 H 1.08001 * 119.94801 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.97763 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.03568 * 179.97438 * 23 22 21 41 41 H 0.96701 * 113.99759 * 90.00852 * 25 24 23 42 42 H 1.08001 * 120.02871 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8799 -1.3810 10 1 6.5988 1.5440 -0.1928 11 1 6.4962 -0.5192 -1.4625 12 1 6.4001 1.6155 -2.6090 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3394 2.6326 0.4340 16 6 0.0362 3.3378 2.6547 17 1 0.3956 2.7494 3.4989 18 7 -1.4276 3.4432 2.7192 19 6 0.6512 4.7376 2.7101 20 6 0.3551 5.3637 4.0486 21 6 1.2327 5.1881 5.1027 22 6 0.9638 5.7607 6.3318 23 6 -0.1835 6.5098 6.5101 24 6 -1.0654 6.6874 5.4543 25 8 -2.1948 7.4233 5.6273 26 6 -0.7954 6.1078 4.2229 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8293 -0.0611 -2.9498 33 1 2.2718 2.1232 1.9978 34 1 -1.7236 3.8328 3.6016 35 1 -1.7856 3.9846 1.9467 36 1 0.2245 5.3535 1.9185 37 1 1.7302 4.6660 2.5732 38 1 2.1294 4.6020 4.9657 39 1 1.6505 5.6218 7.1537 40 1 -0.3935 6.9566 7.4706 41 1 -2.0844 8.3644 5.4345 42 1 -1.4830 6.2407 3.4006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220898551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:21 Heat of formation + Delta-G solvation = -68.074407 kcal Electronic energy + Delta-G solvation = -23306.309135 eV Core-core repulsion = 19864.775336 eV Total energy + Delta-G solvation = -3441.533799 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21743 -39.13431 -37.28294 -35.51029 -34.59282 -32.34845 -31.48903 -30.87598 -30.15730 -27.98005 -26.86657 -24.29293 -22.83776 -22.77118 -21.44189 -19.97904 -19.26756 -18.29370 -17.43929 -16.66501 -16.23476 -15.93136 -15.58510 -15.29520 -14.70231 -14.46490 -14.37856 -14.13366 -13.82762 -13.44239 -13.18128 -12.65927 -12.55176 -12.32708 -12.24942 -11.83980 -11.71453 -11.44513 -11.27075 -11.23223 -10.95360 -10.81931 -10.74483 -10.29442 -10.13239 -9.57730 -9.15708 -9.04680 -9.01018 -8.95334 -8.50820 -8.37469 -7.78134 -6.12038 -4.21515 0.97216 1.04181 3.22841 3.27367 3.30984 3.33078 3.46940 3.88627 4.04273 4.35613 4.54910 4.60505 4.80128 4.92097 5.08365 5.08702 5.16754 5.19497 5.27267 5.51479 5.53900 5.69006 5.76204 5.91555 6.13161 6.14427 6.34296 6.45684 6.53946 6.54795 6.73036 7.10093 7.15984 7.26926 7.35248 7.41720 7.49129 7.56625 7.64291 7.76703 7.92269 8.20488 8.69892 8.79501 9.17833 9.46268 10.93183 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.003510 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.697648 B = 7974.386385 C = 8850.488256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.509 3.491 15 O -0.538 6.538 16 C 0.081 3.919 17 H 0.096 0.904 18 N -0.825 5.825 19 C -0.114 4.114 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.152 4.152 24 C 0.107 3.893 25 O -0.500 6.500 26 C -0.146 4.146 27 H 0.048 0.952 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.386 0.614 34 H 0.341 0.659 35 H 0.349 0.651 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.390 0.610 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 12.305 15.788 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.292 3.708 15 O -0.415 6.415 16 C -0.035 4.035 17 H 0.114 0.886 18 N -0.356 5.356 19 C -0.154 4.154 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.118 4.118 23 C -0.171 4.171 24 C 0.062 3.938 25 O -0.310 6.310 26 C -0.165 4.165 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.218 0.782 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.245 0.755 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.621 10.824 14.977 19.315 hybrid contribution 1.675 1.470 0.284 2.247 sum -3.946 12.294 15.261 19.990 Atomic orbital electron populations 1.21840 0.98181 0.98033 1.01445 1.21927 0.92746 0.99788 1.02147 1.18763 0.94075 0.89203 0.80993 0.93417 1.21272 0.90776 1.38930 1.06211 0.92092 1.24891 0.98526 0.94857 0.95436 1.69907 1.34994 1.37633 1.09333 0.86424 0.84989 0.77780 0.78070 1.19775 1.20888 1.20921 1.46478 1.14528 1.56132 1.18512 1.20074 0.82677 0.79508 0.88508 1.90658 1.51079 1.59600 1.40164 1.21414 0.89713 0.94272 0.98100 0.88599 1.58518 1.07662 1.61460 1.07948 1.21423 1.03380 0.96807 0.93818 1.19763 0.93921 0.96597 0.95721 1.21167 0.99997 1.00292 0.92608 1.21050 0.96617 0.96697 0.97404 1.21416 0.94546 1.01890 0.99212 1.18446 0.86592 0.96117 0.92622 1.84833 1.31561 1.23708 1.90902 1.21355 0.97577 1.00480 0.97074 0.93312 0.95989 0.93829 0.88425 0.95116 0.92636 0.78159 0.84531 0.83649 0.90165 0.89319 0.85330 0.85490 0.85597 0.75474 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.12 5.45 -26.74 -0.15 -3.26 16 3 C 0.27 6.73 2.24 -69.09 -0.15 6.58 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.71 -14.18 5.02 -54.94 -0.28 -14.45 16 14 C 0.51 9.72 5.65 -10.98 -0.06 9.66 16 15 O -0.54 -12.29 13.39 5.56 0.07 -12.21 16 16 C 0.08 1.14 3.20 -68.87 -0.22 0.92 16 17 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 18 N -0.82 -11.44 8.87 -5.65 -0.05 -11.49 16 19 C -0.11 -1.36 4.98 -27.88 -0.14 -1.50 16 20 C -0.06 -0.62 4.73 -104.65 -0.50 -1.12 16 21 C -0.12 -1.17 9.70 -39.56 -0.38 -1.56 16 22 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 23 C -0.15 -1.35 9.99 -39.43 -0.39 -1.74 16 24 C 0.11 1.03 6.70 -39.22 -0.26 0.76 16 25 O -0.50 -4.32 13.50 -19.44 -0.26 -4.58 16 26 C -0.15 -1.47 8.30 -39.44 -0.33 -1.80 16 27 H 0.05 1.19 7.85 -51.92 -0.41 0.78 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.99 5.65 -51.93 -0.29 0.70 16 30 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.68 8.54 -40.82 -0.35 6.33 16 34 H 0.34 4.08 7.31 -39.29 -0.29 3.79 16 35 H 0.35 4.92 8.58 -39.29 -0.34 4.58 16 36 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.09 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.39 1.51 9.06 45.56 0.41 1.92 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -31.50 345.83 -8.06 -39.56 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -5.30 Total: 16.19 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.06 Total: -9.63 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.30 Total: -49.88 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.19 Total: -16.79 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.50 -8.06 -39.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.517 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds