Wall clock time and date at job start Tue Mar 31 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47159 * 2 1 4 4 H 1.09000 * 109.47334 * 305.00062 * 3 2 1 5 5 C 1.50699 * 109.47250 * 184.99633 * 3 2 1 6 6 H 1.07997 * 120.00561 * 239.99832 * 5 3 2 7 7 C 1.37879 * 119.99673 * 59.99982 * 5 3 2 8 8 N 1.31511 * 120.00081 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47036 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47044 * 119.99992 * 9 7 5 12 12 H 1.48500 * 109.47111 * 240.00022 * 9 7 5 13 13 N 1.46499 * 109.47589 * 64.99633 * 3 2 1 14 14 C 1.34777 * 120.00091 * 275.00536 * 13 3 2 15 15 O 1.21280 * 120.00125 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99931 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47183 * 319.99498 * 16 14 13 18 18 N 1.46899 * 109.46848 * 199.99701 * 16 14 13 19 19 C 1.52994 * 109.47336 * 79.99568 * 16 14 13 20 20 C 1.50703 * 109.47043 * 184.99916 * 19 16 14 21 21 C 1.38282 * 119.97110 * 90.00303 * 20 19 16 22 22 C 1.38240 * 120.11355 * 180.02562 * 21 20 19 23 23 C 1.38169 * 120.05585 * 0.02562 * 22 21 20 24 24 C 1.38719 * 119.93968 * 359.97299 * 23 22 21 25 25 O 1.35905 * 120.05115 * 179.97438 * 24 23 22 26 26 C 1.38124 * 119.97190 * 270.27385 * 20 19 16 27 27 H 1.09009 * 109.47169 * 60.00179 * 1 2 3 28 28 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47500 * 300.00364 * 1 2 3 30 30 H 1.09003 * 109.47217 * 239.99814 * 2 1 3 31 31 H 1.09001 * 109.46432 * 120.00196 * 2 1 3 32 32 H 0.96999 * 120.00139 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00318 * 94.99670 * 13 3 2 34 34 H 1.00902 * 110.99957 * 176.04689 * 18 16 14 35 35 H 1.00899 * 111.00282 * 299.99777 * 18 16 14 36 36 H 1.08997 * 109.47092 * 65.00042 * 19 16 14 37 37 H 1.09002 * 109.47047 * 304.99835 * 19 16 14 38 38 H 1.08001 * 119.94801 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.97763 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.03568 * 179.97438 * 23 22 21 41 41 H 0.96701 * 113.99759 * 90.00852 * 25 24 23 42 42 H 1.08001 * 120.02871 * 0.02562 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1237 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8799 -1.3810 10 1 6.5988 1.5440 -0.1928 11 1 6.4962 -0.5192 -1.4625 12 1 6.4001 1.6155 -2.6090 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3394 2.6326 0.4340 16 6 0.0362 3.3378 2.6547 17 1 0.3956 2.7494 3.4989 18 7 -1.4276 3.4432 2.7192 19 6 0.6512 4.7376 2.7101 20 6 0.3551 5.3637 4.0486 21 6 1.2327 5.1881 5.1027 22 6 0.9638 5.7607 6.3318 23 6 -0.1835 6.5098 6.5101 24 6 -1.0654 6.6874 5.4543 25 8 -2.1948 7.4233 5.6273 26 6 -0.7954 6.1078 4.2229 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.8293 -0.0611 -2.9498 33 1 2.2718 2.1232 1.9978 34 1 -1.7236 3.8328 3.6016 35 1 -1.7856 3.9846 1.9467 36 1 0.2245 5.3535 1.9185 37 1 1.7302 4.6660 2.5732 38 1 2.1294 4.6020 4.9657 39 1 1.6505 5.6218 7.1537 40 1 -0.3935 6.9566 7.4706 41 1 -2.0844 8.3644 5.4345 42 1 -1.4830 6.2407 3.4006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220898551.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:20 Heat of formation + Delta-G solvation = -92.084017 kcal Electronic energy + Delta-G solvation = -23307.350270 eV Core-core repulsion = 19864.775336 eV Total energy + Delta-G solvation = -3442.574934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15453 -40.45591 -38.10209 -37.04931 -35.93403 -34.25187 -32.74619 -32.33176 -30.88569 -29.35253 -28.41076 -25.68712 -24.52861 -23.51040 -22.36472 -21.66143 -20.96041 -19.14426 -18.85427 -17.87538 -17.31079 -17.22636 -16.74629 -16.42508 -16.10529 -15.96351 -15.77629 -15.22690 -14.84773 -14.61680 -14.54834 -14.23019 -13.81984 -13.56741 -13.39341 -13.15074 -13.10466 -12.88709 -12.82776 -12.68429 -12.50070 -12.28233 -12.12348 -12.02156 -11.56085 -11.43341 -11.01381 -10.61491 -10.47588 -9.93661 -9.75162 -9.58127 -9.38339 -8.13942 -6.31119 0.27597 0.34632 1.45141 1.46490 1.57929 1.89283 2.36056 2.58477 2.71587 3.15593 3.28764 3.60384 3.78119 3.91950 4.09265 4.12215 4.16596 4.26086 4.40746 4.49967 4.51590 4.60322 4.70510 4.79409 4.83617 5.00175 5.06691 5.09976 5.28921 5.44594 5.46861 5.47783 5.58846 5.60990 5.66419 5.82076 5.90763 5.94191 6.09836 6.19705 6.51233 6.78005 6.85613 7.05671 7.36513 7.65143 8.91525 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021978 B = 0.003510 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.697648 B = 7974.386385 C = 8850.488256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.704 5.704 14 C 0.505 3.495 15 O -0.579 6.579 16 C 0.096 3.904 17 H 0.114 0.886 18 N -0.831 5.831 19 C -0.103 4.103 20 C -0.068 4.068 21 C -0.130 4.130 22 C -0.098 4.098 23 C -0.155 4.155 24 C 0.101 3.899 25 O -0.511 6.511 26 C -0.156 4.156 27 H 0.023 0.977 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.354 0.646 35 H 0.347 0.653 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.151 0.849 40 H 0.143 0.857 41 H 0.409 0.591 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 13.011 18.410 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.019 4.019 17 H 0.132 0.868 18 N -0.364 5.364 19 C -0.143 4.143 20 C -0.068 4.068 21 C -0.148 4.148 22 C -0.116 4.116 23 C -0.173 4.173 24 C 0.056 3.944 25 O -0.325 6.325 26 C -0.174 4.174 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.268 0.732 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.578 11.565 17.654 21.595 hybrid contribution 1.272 1.314 -0.509 1.898 sum -3.306 12.879 17.144 21.696 Atomic orbital electron populations 1.21666 0.97085 0.98938 1.00277 1.21788 0.93604 0.99446 1.01160 1.18321 0.93579 0.88979 0.81479 0.98502 1.21621 0.91419 1.38667 1.06581 0.90826 1.25777 1.03214 0.94483 0.95116 1.70063 1.36962 1.38506 1.09910 0.85342 0.79285 0.77736 0.78223 1.18229 1.20663 1.21160 1.46223 1.15504 1.56075 1.17511 1.20948 0.81617 0.78581 0.89781 1.90642 1.52132 1.60896 1.42176 1.21244 0.90164 0.95310 0.95229 0.86840 1.58493 1.07468 1.61829 1.08603 1.21251 1.03106 0.95156 0.94818 1.19587 0.94656 0.97508 0.95054 1.21371 1.00206 1.00513 0.92701 1.21341 0.96809 0.95797 0.97680 1.21681 0.94349 1.01598 0.99664 1.18561 0.86899 0.96274 0.92650 1.84779 1.31449 1.25320 1.90913 1.21398 0.97650 1.00887 0.97498 0.95741 0.93926 0.93622 0.91153 0.94132 0.92708 0.76276 0.83071 0.83948 0.91144 0.89127 0.84184 0.83107 0.83941 0.73214 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.08 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.19 2.24 44.24 0.10 14.29 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.19 16 5 C -0.54 -28.27 8.73 25.60 0.22 -28.05 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.75 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.30 11.29 21.45 0.24 -52.06 16 9 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.70 -28.07 5.02 -446.11 -2.24 -30.31 16 14 C 0.50 19.32 5.65 87.66 0.49 19.82 16 15 O -0.58 -27.17 13.39 -3.03 -0.04 -27.22 16 16 C 0.10 2.61 3.20 44.17 0.14 2.75 16 17 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 18 N -0.83 -22.37 8.87 -171.80 -1.52 -23.89 16 19 C -0.10 -2.35 4.98 29.85 0.15 -2.20 16 20 C -0.07 -1.30 4.73 -19.88 -0.09 -1.39 16 21 C -0.13 -2.15 9.70 22.28 0.22 -1.93 16 22 C -0.10 -1.39 10.04 22.25 0.22 -1.17 16 23 C -0.15 -2.32 9.99 22.37 0.22 -2.09 16 24 C 0.10 1.74 6.70 22.51 0.15 1.90 16 25 O -0.51 -7.91 13.50 -92.48 -1.25 -9.16 16 26 C -0.16 -2.92 8.30 22.36 0.19 -2.74 16 27 H 0.02 1.21 7.85 -2.38 -0.02 1.19 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 2.08 5.65 -2.39 -0.01 2.06 16 30 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.40 13.40 8.54 -92.71 -0.79 12.61 16 34 H 0.35 7.99 7.31 -89.69 -0.66 7.34 16 35 H 0.35 9.74 8.58 -89.69 -0.77 8.97 16 36 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 37 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.41 2.44 9.06 -74.06 -0.67 1.76 16 42 H 0.12 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -68.84 345.83 -1.36 -70.20 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: -1.82 Total: 39.43 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 3.24 Total: -10.57 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.52 Total: -106.26 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.29 Total: -36.38 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -68.84 -1.36 -70.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220898551.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.883 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds