Wall clock time and date at job start Tue Mar 31 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99769 * 2 1 4 4 O 1.21504 * 120.00449 * 174.93089 * 3 2 1 5 5 O 1.34633 * 119.99959 * 354.66000 * 3 2 1 6 6 C 1.45203 * 117.00211 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47141 * 59.99739 * 6 5 3 8 8 C 1.52996 * 109.47544 * 180.02562 * 6 5 3 9 9 C 1.53003 * 109.46816 * 299.99939 * 6 5 3 10 10 C 1.39400 * 120.00383 * 180.02562 * 2 1 3 11 11 C 1.39041 * 119.69761 * 94.95503 * 10 2 1 12 12 C 1.38356 * 119.10197 * 179.75862 * 11 10 2 13 13 C 1.38845 * 118.49392 * 0.50233 * 12 11 10 14 14 C 1.50699 * 120.34164 * 179.75346 * 13 12 11 15 15 C 1.50703 * 109.47234 * 269.98261 * 14 13 12 16 16 H 1.07996 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00224 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46919 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46846 * 120.00022 * 19 17 15 22 22 H 1.48500 * 109.47292 * 239.99774 * 19 17 15 23 23 C 1.38061 * 119.31010 * 359.73925 * 13 12 11 24 24 N 1.31941 * 120.85145 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47568 * 89.99826 * 1 2 3 26 26 H 1.09004 * 109.47090 * 209.99942 * 1 2 3 27 27 H 1.09000 * 109.46999 * 329.99414 * 1 2 3 28 28 H 1.08998 * 109.47035 * 60.00290 * 7 6 5 29 29 H 1.09002 * 109.46873 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47046 * 300.00293 * 7 6 5 31 31 H 1.09003 * 109.47157 * 59.99859 * 8 6 5 32 32 H 1.09003 * 109.47526 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.46934 * 299.99895 * 8 6 5 34 34 H 1.08998 * 109.47237 * 59.99789 * 9 6 5 35 35 H 1.09003 * 109.46832 * 179.97438 * 9 6 5 36 36 H 1.09003 * 109.47236 * 299.99744 * 9 6 5 37 37 H 1.07999 * 120.44597 * 0.02562 * 11 10 2 38 38 H 1.07999 * 120.75211 * 180.22207 * 12 11 10 39 39 H 1.08993 * 109.47154 * 29.98355 * 14 13 12 40 40 H 1.09001 * 109.47010 * 149.98334 * 14 13 12 41 41 H 0.97003 * 120.00091 * 180.02562 * 18 17 15 42 42 H 1.08007 * 119.57493 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3503 1.1694 0.0930 5 8 1.4700 2.3306 -0.1085 6 6 2.2604 3.5487 -0.1009 7 6 3.2414 3.5274 -1.2748 8 6 1.3337 4.7589 -0.2319 9 6 3.0390 3.6431 1.2128 10 6 2.1621 -1.2072 -0.0005 11 6 2.5969 -1.7510 -1.2041 12 6 3.2920 -2.9472 -1.1898 13 6 3.5202 -3.5662 0.0319 14 6 4.2679 -4.8731 0.0952 15 6 3.2918 -6.0162 -0.0129 16 1 2.2356 -5.8163 -0.1166 17 6 3.7471 -7.3170 0.0217 18 7 5.0333 -7.5604 0.1486 19 14 2.5371 -8.7340 -0.1115 20 1 1.1590 -8.1971 -0.2445 21 1 2.8661 -9.5553 -1.3042 22 1 2.6243 -9.5759 1.1086 23 6 3.0551 -2.9719 1.1880 24 7 2.3991 -1.8280 1.1440 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 2.6867 3.4601 -2.2106 29 1 3.8351 4.4416 -1.2687 30 1 3.9017 2.6652 -1.1809 31 1 0.6351 4.7739 0.6047 32 1 1.9270 5.6733 -0.2257 33 1 0.7786 4.6919 -1.1676 34 1 3.6992 2.7809 1.3067 35 1 3.6327 4.5572 1.2184 36 1 2.3401 3.6582 2.0492 37 1 2.3985 -1.2443 -2.1369 38 1 3.6452 -3.3916 -2.1086 39 1 4.9802 -4.9244 -0.7282 40 1 4.8025 -4.9402 1.0427 41 1 5.3537 -8.4757 0.1725 42 1 3.2298 -3.4500 2.1406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:37 Heat of formation + Delta-G solvation = -44.159870 kcal Electronic energy + Delta-G solvation = -23310.575096 eV Core-core repulsion = 19870.078309 eV Total energy + Delta-G solvation = -3440.496787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03963 -39.71292 -37.42393 -35.59699 -34.14648 -33.46523 -31.97064 -30.86110 -27.68701 -27.54459 -27.52246 -26.51780 -24.18359 -23.17462 -22.22675 -20.76853 -19.56241 -18.09396 -17.23479 -16.65757 -16.43179 -16.12017 -15.67086 -14.96618 -14.62979 -14.48634 -14.17988 -13.88398 -13.49569 -13.39488 -13.14901 -12.70467 -12.55533 -12.45263 -12.35351 -12.23240 -12.06499 -11.98646 -11.72624 -11.59116 -11.43309 -11.34608 -10.81917 -10.65225 -10.49584 -10.06607 -9.96049 -9.65864 -9.40553 -9.18254 -8.67606 -8.49531 -8.11190 -6.13241 -4.18279 1.52222 1.80930 2.08460 2.80458 3.24695 3.32835 3.37029 3.72002 4.25746 4.42114 4.53371 4.57341 4.72003 4.95957 5.15098 5.21828 5.25764 5.34362 5.35354 5.36923 5.48933 5.49757 5.56897 5.59046 5.66325 5.69084 5.69249 5.77666 5.84939 6.14827 6.15412 6.18806 6.31059 6.63223 6.68349 6.82048 7.21742 7.32752 7.43979 7.57570 7.81583 8.17941 8.31151 8.46861 8.86654 9.46565 10.96588 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038079 B = 0.003041 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.141983 B = 9204.881257 C = 9456.735570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.541 5.541 3 C 0.659 3.341 4 O -0.553 6.553 5 O -0.361 6.361 6 C 0.135 3.865 7 C -0.184 4.184 8 C -0.139 4.139 9 C -0.184 4.184 10 C 0.316 3.684 11 C -0.146 4.146 12 C -0.077 4.077 13 C -0.070 4.070 14 C 0.050 3.950 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.104 3.896 24 N -0.483 5.483 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.137 0.863 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 21.340 -2.246 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.279 5.279 3 C 0.414 3.586 4 O -0.440 6.440 5 O -0.275 6.275 6 C 0.098 3.902 7 C -0.241 4.241 8 C -0.196 4.196 9 C -0.241 4.241 10 C 0.091 3.909 11 C -0.169 4.169 12 C -0.103 4.103 13 C -0.072 4.072 14 C 0.013 3.987 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.054 4.054 24 N -0.193 5.193 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.711 21.701 -1.425 23.074 hybrid contribution -0.351 -1.184 -0.806 1.474 sum -8.062 20.517 -2.230 22.157 Atomic orbital electron populations 1.21813 0.77372 1.03732 1.02214 1.43513 1.06954 1.01160 1.76306 1.17863 0.83843 0.80789 0.76094 1.90923 1.12480 1.86415 1.54190 1.86285 1.41254 1.13733 1.86276 1.22081 0.90913 0.80573 0.96625 1.22523 1.00009 1.04598 0.96994 1.21846 0.99586 0.94938 1.03233 1.22518 1.01325 1.04459 0.95828 1.17370 0.97699 0.86635 0.89181 1.21855 1.00076 0.97203 0.97731 1.21458 0.96489 0.93389 0.99003 1.21773 0.95065 0.97630 0.92690 1.18351 0.94869 0.86448 0.99045 1.21036 0.93332 0.89926 1.51121 0.92369 1.25003 0.95267 0.98952 0.94949 1.69959 1.12941 1.20391 1.49651 0.86457 0.81280 0.82089 0.77761 1.19655 1.20883 1.20835 1.22460 0.94157 0.89670 0.99087 1.67041 1.13302 1.09756 1.29233 0.92147 0.90522 0.90335 0.92166 0.91179 0.89258 0.91494 0.90183 0.91484 0.89304 0.91178 0.92150 0.85720 0.84533 0.94787 0.94646 0.92719 0.82419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.39 59.85 0.62 1.68 16 2 N -0.54 -8.52 2.97 -128.25 -0.38 -8.90 16 3 C 0.66 10.57 7.65 54.05 0.41 10.98 16 4 O -0.55 -10.26 11.86 -19.28 -0.23 -10.49 16 5 O -0.36 -4.73 8.77 -40.31 -0.35 -5.09 16 6 C 0.13 1.45 1.13 -90.62 -0.10 1.34 16 7 C -0.18 -1.95 8.37 37.16 0.31 -1.64 16 8 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 9 C -0.18 -2.02 8.37 37.16 0.31 -1.70 16 10 C 0.32 5.76 5.44 -154.71 -0.84 4.92 16 11 C -0.15 -2.54 10.02 -39.24 -0.39 -2.93 16 12 C -0.08 -1.45 9.85 -39.31 -0.39 -1.84 16 13 C -0.07 -1.47 5.09 -104.46 -0.53 -2.00 16 14 C 0.05 1.23 5.13 -29.03 -0.15 1.08 16 15 C -0.52 -13.80 9.09 -34.44 -0.31 -14.11 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 19 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.10 2.10 10.85 -17.57 -0.19 1.91 16 24 N -0.48 -9.59 10.39 -12.37 -0.13 -9.72 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.89 8.05 -51.93 -0.42 0.48 16 27 H 0.08 0.79 7.46 -51.93 -0.39 0.40 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.21 5.87 -51.93 -0.30 0.91 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 1.26 5.89 -51.93 -0.31 0.95 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.14 2.36 8.06 -52.49 -0.42 1.93 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.16 2.98 8.06 -52.48 -0.42 2.55 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -31.32 352.66 -7.53 -38.85 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.45 Total: 0.39 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -1.02 Total: -1.45 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.23 Total: -43.37 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.58 Total: -15.58 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.32 -7.53 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.312 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds