Wall clock time and date at job start Tue Mar 31 2020 06:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 119.99769 * 2 1 4 4 O 1.21504 * 120.00449 * 174.93089 * 3 2 1 5 5 O 1.34633 * 119.99959 * 354.66000 * 3 2 1 6 6 C 1.45203 * 117.00211 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47141 * 59.99739 * 6 5 3 8 8 C 1.52996 * 109.47544 * 180.02562 * 6 5 3 9 9 C 1.53003 * 109.46816 * 299.99939 * 6 5 3 10 10 C 1.39400 * 120.00383 * 180.02562 * 2 1 3 11 11 C 1.39041 * 119.69761 * 94.95503 * 10 2 1 12 12 C 1.38356 * 119.10197 * 179.75862 * 11 10 2 13 13 C 1.38845 * 118.49392 * 0.50233 * 12 11 10 14 14 C 1.50699 * 120.34164 * 179.75346 * 13 12 11 15 15 C 1.50703 * 109.47234 * 269.98261 * 14 13 12 16 16 H 1.07996 * 119.99820 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99852 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00224 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46919 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.46846 * 120.00022 * 19 17 15 22 22 H 1.48500 * 109.47292 * 239.99774 * 19 17 15 23 23 C 1.38061 * 119.31010 * 359.73925 * 13 12 11 24 24 N 1.31941 * 120.85145 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47568 * 89.99826 * 1 2 3 26 26 H 1.09004 * 109.47090 * 209.99942 * 1 2 3 27 27 H 1.09000 * 109.46999 * 329.99414 * 1 2 3 28 28 H 1.08998 * 109.47035 * 60.00290 * 7 6 5 29 29 H 1.09002 * 109.46873 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47046 * 300.00293 * 7 6 5 31 31 H 1.09003 * 109.47157 * 59.99859 * 8 6 5 32 32 H 1.09003 * 109.47526 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.46934 * 299.99895 * 8 6 5 34 34 H 1.08998 * 109.47237 * 59.99789 * 9 6 5 35 35 H 1.09003 * 109.46832 * 179.97438 * 9 6 5 36 36 H 1.09003 * 109.47236 * 299.99744 * 9 6 5 37 37 H 1.07999 * 120.44597 * 0.02562 * 11 10 2 38 38 H 1.07999 * 120.75211 * 180.22207 * 12 11 10 39 39 H 1.08993 * 109.47154 * 29.98355 * 14 13 12 40 40 H 1.09001 * 109.47010 * 149.98334 * 14 13 12 41 41 H 0.97003 * 120.00091 * 180.02562 * 18 17 15 42 42 H 1.08007 * 119.57493 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3503 1.1694 0.0930 5 8 1.4700 2.3306 -0.1085 6 6 2.2604 3.5487 -0.1009 7 6 3.2414 3.5274 -1.2748 8 6 1.3337 4.7589 -0.2319 9 6 3.0390 3.6431 1.2128 10 6 2.1621 -1.2072 -0.0005 11 6 2.5969 -1.7510 -1.2041 12 6 3.2920 -2.9472 -1.1898 13 6 3.5202 -3.5662 0.0319 14 6 4.2679 -4.8731 0.0952 15 6 3.2918 -6.0162 -0.0129 16 1 2.2356 -5.8163 -0.1166 17 6 3.7471 -7.3170 0.0217 18 7 5.0333 -7.5604 0.1486 19 14 2.5371 -8.7340 -0.1115 20 1 1.1590 -8.1971 -0.2445 21 1 2.8661 -9.5553 -1.3042 22 1 2.6243 -9.5759 1.1086 23 6 3.0551 -2.9719 1.1880 24 7 2.3991 -1.8280 1.1440 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 2.6867 3.4601 -2.2106 29 1 3.8351 4.4416 -1.2687 30 1 3.9017 2.6652 -1.1809 31 1 0.6351 4.7739 0.6047 32 1 1.9270 5.6733 -0.2257 33 1 0.7786 4.6919 -1.1676 34 1 3.6992 2.7809 1.3067 35 1 3.6327 4.5572 1.2184 36 1 2.3401 3.6582 2.0492 37 1 2.3985 -1.2443 -2.1369 38 1 3.6452 -3.3916 -2.1086 39 1 4.9802 -4.9244 -0.7282 40 1 4.8025 -4.9402 1.0427 41 1 5.3537 -8.4757 0.1725 42 1 3.2298 -3.4500 2.1406 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:36 Heat of formation + Delta-G solvation = -61.556351 kcal Electronic energy + Delta-G solvation = -23311.329464 eV Core-core repulsion = 19870.078309 eV Total energy + Delta-G solvation = -3441.251155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.23818 -41.08821 -38.57250 -36.88502 -35.59012 -34.83912 -33.64273 -32.46156 -29.22259 -28.36934 -28.27665 -27.75185 -25.83584 -24.70192 -23.69053 -22.19096 -20.64838 -19.29320 -18.54349 -18.35658 -17.99433 -17.18265 -16.92580 -16.75345 -15.80500 -15.73011 -15.39288 -15.17523 -14.77942 -14.46045 -14.41119 -14.12394 -14.00466 -13.58863 -13.46614 -13.26643 -13.24014 -13.11104 -12.89066 -12.85626 -12.66450 -12.50714 -12.47322 -12.32909 -11.78283 -11.63263 -11.42137 -11.19330 -10.85191 -10.71977 -10.58977 -10.02238 -9.72570 -8.21225 -6.33872 0.03573 0.30064 0.92384 1.41482 1.43120 1.55335 1.59130 2.39616 2.63451 2.84103 3.11471 3.60321 3.75163 3.79776 3.94701 3.96227 4.06417 4.13417 4.17432 4.40021 4.48545 4.56234 4.61780 4.64476 4.71756 4.77103 4.79870 4.84769 4.89861 5.07787 5.12939 5.15855 5.25533 5.28742 5.33115 5.36209 5.40124 5.68999 5.72763 5.81520 6.10958 6.13679 6.77757 6.88709 7.17940 7.35202 8.88846 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.038079 B = 0.003041 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.141983 B = 9204.881257 C = 9456.735570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.547 5.547 3 C 0.658 3.342 4 O -0.584 6.584 5 O -0.353 6.353 6 C 0.122 3.878 7 C -0.181 4.181 8 C -0.132 4.132 9 C -0.181 4.181 10 C 0.319 3.681 11 C -0.140 4.140 12 C -0.074 4.074 13 C -0.092 4.092 14 C 0.061 3.939 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.927 5.927 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.099 3.901 24 N -0.498 5.498 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.266 0.734 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 23.192 -3.231 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.285 5.285 3 C 0.414 3.586 4 O -0.474 6.474 5 O -0.268 6.268 6 C 0.086 3.914 7 C -0.238 4.238 8 C -0.189 4.189 9 C -0.239 4.239 10 C 0.093 3.907 11 C -0.162 4.162 12 C -0.100 4.100 13 C -0.094 4.094 14 C 0.023 3.977 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.567 5.567 19 Si 0.789 3.211 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.204 1.204 23 C -0.058 4.058 24 N -0.209 5.209 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.173 0.827 38 H 0.168 0.832 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.872 23.577 -2.408 25.673 hybrid contribution 0.310 -1.593 -0.501 1.699 sum -9.562 21.983 -2.909 24.149 Atomic orbital electron populations 1.22061 0.74868 1.04448 1.04026 1.43702 1.08375 1.00276 1.76173 1.17983 0.83501 0.81501 0.75639 1.90924 1.13998 1.87003 1.55456 1.86312 1.41255 1.13441 1.85742 1.22525 0.91850 0.80597 0.96381 1.22481 0.99760 1.04223 0.97313 1.21872 0.99349 0.93791 1.03856 1.22483 1.01085 1.03992 0.96300 1.17731 0.96705 0.87158 0.89074 1.22101 0.98860 0.96444 0.98778 1.21617 0.96062 0.93727 0.98599 1.21465 0.96747 0.96972 0.94224 1.18068 0.94413 0.88166 0.97019 1.21336 0.93591 0.90947 1.50682 0.92508 1.25865 0.96946 1.01684 0.94556 1.70073 1.14800 1.21125 1.50713 0.85405 0.79145 0.78686 0.77863 1.18899 1.20242 1.20417 1.22449 0.94320 0.90010 0.99025 1.67103 1.13832 1.09710 1.30279 0.89769 0.90785 0.88689 0.91417 0.88856 0.92657 0.91001 0.87805 0.90721 0.92964 0.88724 0.91872 0.82657 0.83209 0.96643 0.96825 0.92497 0.82227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 10.39 127.77 1.33 3.14 16 2 N -0.55 -16.43 2.97 -790.08 -2.35 -18.78 16 3 C 0.66 20.47 7.65 129.79 0.99 21.46 16 4 O -0.58 -21.83 11.86 19.83 0.24 -21.59 16 5 O -0.35 -8.62 8.77 -55.43 -0.49 -9.10 16 6 C 0.12 2.37 1.13 -10.79 -0.01 2.36 16 7 C -0.18 -3.51 8.37 71.98 0.60 -2.91 16 8 C -0.13 -1.48 8.85 71.98 0.64 -0.84 16 9 C -0.18 -3.74 8.37 71.98 0.60 -3.14 16 10 C 0.32 11.38 5.44 132.92 0.72 12.10 16 11 C -0.14 -4.67 10.02 22.49 0.23 -4.44 16 12 C -0.07 -2.75 9.85 22.44 0.22 -2.53 16 13 C -0.09 -3.97 5.09 -19.76 -0.10 -4.07 16 14 C 0.06 3.10 5.13 29.10 0.15 3.25 16 15 C -0.53 -28.72 9.09 25.60 0.23 -28.49 16 16 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.01 0.45 5.46 84.65 0.46 0.91 16 18 N -0.93 -54.12 13.29 21.44 0.28 -53.83 16 19 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 C 0.10 4.10 10.85 84.63 0.92 5.02 16 24 N -0.50 -19.84 10.39 -193.04 -2.01 -21.85 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.59 8.05 -2.38 -0.02 1.57 16 27 H 0.09 1.67 7.46 -2.39 -0.02 1.65 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.49 5.87 -2.39 -0.01 1.48 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.49 5.89 -2.39 -0.01 1.48 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 40 H 0.01 0.73 8.09 -2.39 -0.02 0.71 16 41 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 42 H 0.16 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -68.86 352.66 5.69 -63.17 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.24 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 6.98 Total: 1.81 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.07 Total: -94.46 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.25 Total: -30.70 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -68.86 5.69 -63.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.617 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds