Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47230 * 239.99722 * 2 1 3 5 5 O 1.45201 * 109.47363 * 119.99520 * 2 1 3 6 6 C 1.34639 * 116.99803 * 59.99491 * 5 2 1 7 7 O 1.21513 * 120.00160 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00433 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00437 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.47036 * 180.02562 * 9 8 6 11 11 C 1.38225 * 120.41904 * 259.97346 * 10 9 8 12 12 N 1.31847 * 120.76447 * 180.02562 * 11 10 9 13 13 C 1.31891 * 121.72615 * 359.97438 * 12 11 10 14 14 C 1.38185 * 120.76240 * 0.02562 * 13 12 11 15 15 C 1.38627 * 120.41932 * 80.00322 * 10 9 8 16 16 C 1.50705 * 120.79046 * 359.95106 * 15 10 9 17 17 C 1.50699 * 109.47251 * 85.02516 * 16 15 10 18 18 H 1.08010 * 119.99712 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00185 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47025 * 60.00292 * 21 19 17 23 23 H 1.48493 * 109.46982 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46936 * 300.00386 * 21 19 17 25 25 H 1.08998 * 109.47442 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.46994 * 60.00771 * 1 2 3 27 27 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46919 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46525 * 299.99516 * 3 2 1 30 30 H 1.08998 * 109.47311 * 59.99454 * 3 2 1 31 31 H 1.09001 * 109.47335 * 299.99623 * 4 2 1 32 32 H 1.08997 * 109.47106 * 60.00334 * 4 2 1 33 33 H 1.09005 * 109.46566 * 180.02562 * 4 2 1 34 34 H 0.97006 * 119.99780 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.46959 * 60.00350 * 9 8 6 36 36 H 1.09008 * 109.46881 * 300.00415 * 9 8 6 37 37 H 1.07996 * 119.61319 * 0.05090 * 11 10 9 38 38 H 1.07996 * 119.61758 * 180.28019 * 13 12 11 39 39 H 1.07999 * 120.41398 * 179.97438 * 14 13 12 40 40 H 1.09003 * 109.46872 * 205.02605 * 16 15 10 41 41 H 1.08996 * 109.47239 * 325.02602 * 16 15 10 42 42 H 0.97002 * 120.00227 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3385 7 8 0.9514 -2.5096 0.5038 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5829 10 6 2.2657 -4.6066 3.8599 11 6 3.4109 -5.3800 3.8289 12 7 3.9335 -5.8560 4.9419 13 6 3.3918 -5.6166 6.1203 14 6 2.2463 -4.8515 6.2293 15 6 1.6674 -4.3341 5.0803 16 6 0.4182 -3.4946 5.1568 17 6 -0.7888 -4.3684 4.9320 18 1 -0.6639 -5.4261 4.7522 19 6 -2.0526 -3.8179 4.9569 20 7 -2.2048 -2.5302 5.1763 21 14 -3.5488 -4.9010 4.6776 22 1 -3.5970 -5.9571 5.7204 23 1 -4.7797 -4.0738 4.7530 24 1 -3.4590 -5.5329 3.3368 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 2.6276 -2.2367 3.0830 35 1 2.0411 -4.6497 1.7378 36 1 0.5877 -4.1364 2.6282 37 1 3.8832 -5.5966 2.8822 38 1 3.8511 -6.0198 7.0107 39 1 1.8072 -4.6593 7.1971 40 1 0.3524 -3.0300 6.1406 41 1 0.4536 -2.7199 4.3908 42 1 -3.0940 -2.1430 5.1941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -63.657819 kcal Electronic energy + Delta-G solvation = -23764.108082 eV Core-core repulsion = 20322.765801 eV Total energy + Delta-G solvation = -3441.342282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.49506 -39.78356 -37.17147 -34.98965 -34.01732 -33.56644 -31.98099 -31.00363 -27.95035 -27.37260 -27.25369 -26.12434 -23.79644 -22.45176 -21.60920 -20.60100 -19.81699 -17.98409 -16.50981 -16.40569 -16.25519 -15.84598 -15.69044 -15.05656 -14.65061 -14.47860 -14.26803 -13.98880 -13.42315 -13.21344 -12.93367 -12.64183 -12.45193 -12.42104 -12.06448 -12.01172 -11.82126 -11.75379 -11.61888 -11.23636 -11.17442 -10.99267 -10.86705 -10.50914 -10.17772 -10.08409 -9.83012 -9.74134 -8.97250 -8.75716 -8.63593 -8.57238 -8.50910 -6.15696 -4.20700 1.43709 1.88034 2.59504 3.23648 3.27337 3.31850 3.34910 4.21261 4.37778 4.59541 4.79981 4.81339 4.83753 4.98838 5.11986 5.20143 5.38621 5.47285 5.47990 5.58315 5.59416 5.69093 5.71003 5.82507 5.90105 5.96440 6.02676 6.13952 6.17997 6.34191 6.41187 6.48430 6.67326 6.71380 6.79431 6.84176 7.18127 7.37787 7.54223 7.78150 7.80253 8.13100 8.37837 8.74812 8.82922 9.44360 10.94114 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.005790 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.595966 B = 4834.708327 C = 6695.146189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.367 6.367 6 C 0.652 3.348 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.187 3.813 10 C -0.171 4.171 11 C 0.111 3.889 12 N -0.510 5.510 13 C 0.097 3.903 14 C -0.181 4.181 15 C 0.026 3.974 16 C 0.044 3.956 17 C -0.517 4.517 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.031 0.969 41 H 0.041 0.959 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.631 4.211 -6.952 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.282 6.282 6 C 0.405 3.595 7 O -0.459 6.459 8 N -0.356 5.356 9 C 0.065 3.935 10 C -0.174 4.174 11 C -0.046 4.046 12 N -0.219 5.219 13 C -0.059 4.059 14 C -0.201 4.201 15 C 0.018 3.982 16 C 0.007 3.993 17 C -0.556 4.556 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.121 0.879 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.888 3.636 -7.447 12.902 hybrid contribution -1.510 0.152 0.318 1.551 sum 8.378 3.789 -7.129 11.635 Atomic orbital electron populations 1.22516 0.93894 1.05469 1.02285 1.21986 0.94515 0.91300 0.82199 1.21848 1.01936 0.92913 1.03000 1.22511 1.01221 1.03716 0.96478 1.86285 1.71665 1.24026 1.46263 1.17999 0.78806 0.80238 0.82453 1.90878 1.40949 1.70424 1.43678 1.44749 1.55023 1.12589 1.23198 1.20089 1.02108 0.78025 0.93306 1.20653 0.98033 1.03302 0.95420 1.22541 0.92082 0.93428 0.96577 1.67638 1.33088 1.22521 0.98672 1.22651 0.93136 0.94857 0.95259 1.22107 0.97495 1.00576 0.99898 1.21123 0.94418 0.91620 0.91054 1.18479 0.87537 0.94280 0.99016 1.20837 0.89795 0.94497 1.50425 0.92492 1.24958 0.99043 0.95035 0.94763 1.69926 1.23273 1.10852 1.48495 0.86596 0.81791 0.80348 0.79041 1.20108 1.21139 1.19948 0.91930 0.91564 0.89091 0.91708 0.90411 0.91421 0.89252 0.91458 0.92439 0.76294 0.91233 0.87911 0.83569 0.83550 0.85063 0.95043 0.94078 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.37 37.15 0.31 -2.32 16 2 C 0.14 1.85 1.13 -90.62 -0.10 1.74 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 5 O -0.37 -5.93 9.94 -40.32 -0.40 -6.33 16 6 C 0.65 11.70 8.06 54.05 0.44 12.14 16 7 O -0.57 -11.32 11.88 -19.28 -0.23 -11.55 16 8 N -0.70 -11.79 4.98 -66.47 -0.33 -12.12 16 9 C 0.19 3.30 5.00 -5.19 -0.03 3.27 16 10 C -0.17 -3.02 5.27 -104.48 -0.55 -3.57 16 11 C 0.11 1.79 10.83 -17.55 -0.19 1.60 16 12 N -0.51 -8.54 10.36 -13.25 -0.14 -8.67 16 13 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 14 C -0.18 -3.17 9.80 -39.44 -0.39 -3.56 16 15 C 0.03 0.51 5.11 -104.32 -0.53 -0.02 16 16 C 0.04 1.03 4.50 -29.03 -0.13 0.90 16 17 C -0.52 -13.63 8.42 -34.44 -0.29 -13.92 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 21 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 1.57 5.88 -51.93 -0.31 1.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.40 6.22 8.57 -40.82 -0.35 5.87 16 35 H 0.07 1.11 8.02 -51.93 -0.42 0.69 16 36 H 0.10 2.20 6.88 -51.92 -0.36 1.84 16 37 H 0.15 1.95 8.04 -52.49 -0.42 1.53 16 38 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 348.95 15.07 5.26 5.26 Total: -1.00 -30.08 348.95 -7.51 -37.59 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.27 Total: 8.01 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -1.12 Total: -3.78 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.27 Total: -45.32 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.63 Total: -17.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.08 -7.51 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.065 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds