Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47230 * 239.99722 * 2 1 3 5 5 O 1.45201 * 109.47363 * 119.99520 * 2 1 3 6 6 C 1.34639 * 116.99803 * 59.99491 * 5 2 1 7 7 O 1.21513 * 120.00160 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00433 * 179.97438 * 6 5 2 9 9 C 1.46497 * 120.00437 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.47036 * 180.02562 * 9 8 6 11 11 C 1.38225 * 120.41904 * 259.97346 * 10 9 8 12 12 N 1.31847 * 120.76447 * 180.02562 * 11 10 9 13 13 C 1.31891 * 121.72615 * 359.97438 * 12 11 10 14 14 C 1.38185 * 120.76240 * 0.02562 * 13 12 11 15 15 C 1.38627 * 120.41932 * 80.00322 * 10 9 8 16 16 C 1.50705 * 120.79046 * 359.95106 * 15 10 9 17 17 C 1.50699 * 109.47251 * 85.02516 * 16 15 10 18 18 H 1.08010 * 119.99712 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00185 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00040 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47025 * 60.00292 * 21 19 17 23 23 H 1.48493 * 109.46982 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46936 * 300.00386 * 21 19 17 25 25 H 1.08998 * 109.47442 * 300.00466 * 1 2 3 26 26 H 1.09005 * 109.46994 * 60.00771 * 1 2 3 27 27 H 1.08998 * 109.47162 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46919 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.46525 * 299.99516 * 3 2 1 30 30 H 1.08998 * 109.47311 * 59.99454 * 3 2 1 31 31 H 1.09001 * 109.47335 * 299.99623 * 4 2 1 32 32 H 1.08997 * 109.47106 * 60.00334 * 4 2 1 33 33 H 1.09005 * 109.46566 * 180.02562 * 4 2 1 34 34 H 0.97006 * 119.99780 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.46959 * 60.00350 * 9 8 6 36 36 H 1.09008 * 109.46881 * 300.00415 * 9 8 6 37 37 H 1.07996 * 119.61319 * 0.05090 * 11 10 9 38 38 H 1.07996 * 119.61758 * 180.28019 * 13 12 11 39 39 H 1.07999 * 120.41398 * 179.97438 * 14 13 12 40 40 H 1.09003 * 109.46872 * 205.02605 * 16 15 10 41 41 H 1.08996 * 109.47239 * 325.02602 * 16 15 10 42 42 H 0.97002 * 120.00227 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3385 7 8 0.9514 -2.5096 0.5038 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5829 10 6 2.2657 -4.6066 3.8599 11 6 3.4109 -5.3800 3.8289 12 7 3.9335 -5.8560 4.9419 13 6 3.3918 -5.6166 6.1203 14 6 2.2463 -4.8515 6.2293 15 6 1.6674 -4.3341 5.0803 16 6 0.4182 -3.4946 5.1568 17 6 -0.7888 -4.3684 4.9320 18 1 -0.6639 -5.4261 4.7522 19 6 -2.0526 -3.8179 4.9569 20 7 -2.2048 -2.5302 5.1763 21 14 -3.5488 -4.9010 4.6776 22 1 -3.5970 -5.9571 5.7204 23 1 -4.7797 -4.0738 4.7530 24 1 -3.4590 -5.5329 3.3368 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 2.6276 -2.2367 3.0830 35 1 2.0411 -4.6497 1.7378 36 1 0.5877 -4.1364 2.6282 37 1 3.8832 -5.5966 2.8822 38 1 3.8511 -6.0198 7.0107 39 1 1.8072 -4.6593 7.1971 40 1 0.3524 -3.0300 6.1406 41 1 0.4536 -2.7199 4.3908 42 1 -3.0940 -2.1430 5.1941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = -82.531972 kcal Electronic energy + Delta-G solvation = -23764.926527 eV Core-core repulsion = 20322.765801 eV Total energy + Delta-G solvation = -3442.160726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.56 seconds Orbital eigenvalues (eV) -41.83073 -41.14524 -38.45097 -36.48382 -35.59788 -34.91964 -33.73177 -32.35035 -29.74966 -28.34314 -28.26890 -27.55331 -25.63205 -23.76442 -23.05257 -22.07971 -21.08099 -19.29721 -18.55339 -17.71517 -17.63768 -17.31155 -17.02064 -16.44065 -16.28207 -15.94083 -15.38607 -15.28198 -14.80107 -14.41661 -14.31680 -14.25248 -13.99001 -13.81073 -13.43758 -13.30769 -13.04159 -12.88174 -12.83326 -12.73289 -12.71510 -12.43841 -12.30889 -12.14900 -11.93245 -11.74862 -11.35957 -11.13424 -10.63452 -10.36179 -10.20811 -10.14548 -9.94026 -8.25170 -6.35656 0.10714 0.44398 1.32085 1.36797 1.38900 1.45864 1.82672 2.36240 2.92213 3.08789 3.31961 3.55868 3.78525 3.79459 3.82706 3.97492 4.01898 4.10382 4.13896 4.48031 4.57900 4.63480 4.70937 4.76958 4.78157 4.83015 4.86864 4.90070 4.93531 5.08719 5.16784 5.23626 5.30358 5.31841 5.32606 5.40253 5.59321 5.69133 5.78813 5.84289 6.10321 6.42779 6.75177 7.05820 7.32520 7.37234 8.84437 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.005790 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.595966 B = 4834.708327 C = 6695.146189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.176 4.176 5 O -0.371 6.371 6 C 0.648 3.352 7 O -0.593 6.593 8 N -0.693 5.693 9 C 0.196 3.804 10 C -0.171 4.171 11 C 0.121 3.879 12 N -0.513 5.513 13 C 0.109 3.891 14 C -0.187 4.187 15 C 0.001 3.999 16 C 0.056 3.944 17 C -0.523 4.523 18 H 0.053 0.947 19 C 0.013 3.987 20 N -0.922 5.922 21 Si 0.953 3.047 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.273 1.273 25 H 0.049 0.951 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.178 0.822 38 H 0.186 0.814 39 H 0.137 0.863 40 H 0.008 0.992 41 H 0.020 0.980 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.242 3.708 -7.586 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.286 6.286 6 C 0.401 3.599 7 O -0.484 6.484 8 N -0.352 5.352 9 C 0.074 3.926 10 C -0.174 4.174 11 C -0.036 4.036 12 N -0.222 5.222 13 C -0.047 4.047 14 C -0.207 4.207 15 C -0.007 4.007 16 C 0.019 3.981 17 C -0.561 4.561 18 H 0.071 0.929 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.778 3.222 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.245 0.755 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.195 0.805 38 H 0.202 0.798 39 H 0.155 0.845 40 H 0.026 0.974 41 H 0.039 0.961 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.518 3.137 -8.070 14.409 hybrid contribution -1.961 0.329 0.503 2.051 sum 9.557 3.465 -7.567 12.673 Atomic orbital electron populations 1.22484 0.94924 1.03320 1.03193 1.22454 0.93997 0.93102 0.81819 1.21880 1.02621 0.90338 1.04196 1.22445 1.01819 1.02090 0.96923 1.86303 1.71583 1.22944 1.47774 1.18173 0.78538 0.80833 0.82338 1.90869 1.41905 1.71103 1.44563 1.44704 1.54832 1.12469 1.23152 1.19876 0.99552 0.78805 0.94394 1.20590 0.98704 1.03790 0.94297 1.22934 0.91006 0.91872 0.97795 1.67777 1.33027 1.22380 0.99041 1.23168 0.91911 0.93277 0.96314 1.22220 0.98258 1.00883 0.99359 1.20836 0.93860 0.92883 0.93098 1.18148 0.89185 0.94042 0.96720 1.21152 0.91052 0.94607 1.49324 0.92871 1.25753 1.01931 0.96170 0.94760 1.70040 1.23742 1.12402 1.49996 0.85677 0.78571 0.78926 0.79043 1.18946 1.20785 1.19837 0.93150 0.88513 0.92647 0.90630 0.87560 0.91875 0.92180 0.88788 0.91362 0.75535 0.89225 0.92236 0.80463 0.79755 0.84530 0.97415 0.96147 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.24 8.37 71.98 0.60 -4.64 16 2 C 0.12 3.21 1.13 -10.79 -0.01 3.20 16 3 C -0.13 -2.43 8.85 71.98 0.64 -1.79 16 4 C -0.18 -4.13 8.37 71.98 0.60 -3.52 16 5 O -0.37 -12.09 9.94 -55.48 -0.55 -12.64 16 6 C 0.65 23.94 8.06 129.79 1.05 24.99 16 7 O -0.59 -24.53 11.88 19.80 0.24 -24.30 16 8 N -0.69 -24.02 4.98 -594.61 -2.96 -26.98 16 9 C 0.20 7.07 5.00 85.64 0.43 7.49 16 10 C -0.17 -5.95 5.27 -19.77 -0.10 -6.06 16 11 C 0.12 3.60 10.83 84.69 0.92 4.51 16 12 N -0.51 -15.59 10.36 -195.85 -2.03 -17.62 16 13 C 0.11 3.13 11.18 84.67 0.95 4.08 16 14 C -0.19 -6.38 9.80 22.36 0.22 -6.16 16 15 C 0.00 0.06 5.11 -19.67 -0.10 -0.04 16 16 C 0.06 2.76 4.50 29.10 0.13 2.90 16 17 C -0.52 -28.45 8.42 25.60 0.22 -28.23 16 18 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 19 C 0.01 0.73 5.46 84.65 0.46 1.19 16 20 N -0.92 -54.38 13.29 21.44 0.28 -54.09 16 21 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 27 H 0.05 2.00 5.88 -2.39 -0.01 1.99 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.41 12.91 8.57 -92.70 -0.79 12.11 16 35 H 0.09 2.82 8.02 -2.39 -0.02 2.80 16 36 H 0.06 2.68 6.88 -2.38 -0.02 2.66 16 37 H 0.18 4.12 8.04 -2.91 -0.02 4.09 16 38 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 40 H 0.01 0.40 8.07 -2.39 -0.02 0.38 16 41 H 0.02 1.07 6.79 -2.39 -0.02 1.06 16 42 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -67.33 348.95 3.22 -64.10 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.23 Total: 27.50 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.99 Total: -2.09 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.71 Total: -98.69 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.32 Total: -36.94 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -67.33 3.22 -64.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.429 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.56 seconds