Wall clock time and date at job start Tue Mar 31 2020 06:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47401 * 2 1 4 4 C 1.34680 * 117.00022 * 179.97438 * 3 2 1 5 5 O 1.21429 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.48043 * 119.99671 * 179.97438 * 4 3 2 7 7 C 1.39877 * 120.93352 * 359.97438 * 6 4 3 8 8 C 1.38122 * 119.00080 * 180.02562 * 7 6 4 9 9 N 1.31828 * 120.90136 * 359.73269 * 8 7 6 10 10 C 1.31797 * 122.05724 * 0.55674 * 9 8 7 11 11 C 1.50701 * 119.54700 * 179.71271 * 10 9 8 12 12 N 1.46900 * 109.47162 * 274.73346 * 11 10 9 13 13 C 1.46899 * 110.99940 * 174.80267 * 12 11 10 14 14 H 1.08998 * 109.47334 * 325.87003 * 13 12 11 15 15 C 1.50702 * 109.46845 * 85.87217 * 13 12 11 16 16 H 1.08001 * 120.00298 * 359.97438 * 15 13 12 17 17 C 1.37875 * 119.99908 * 180.02562 * 15 13 12 18 18 N 1.31516 * 120.00259 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00314 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46988 * 89.99671 * 19 17 15 21 21 H 1.48496 * 109.47169 * 209.99910 * 19 17 15 22 22 H 1.48497 * 109.46626 * 329.99930 * 19 17 15 23 23 C 1.52997 * 109.47019 * 205.86522 * 13 12 11 24 24 C 1.53003 * 109.47046 * 64.25239 * 23 13 12 25 25 C 1.38166 * 120.90241 * 359.44099 * 10 9 8 26 26 H 1.09004 * 109.47016 * 59.99677 * 1 2 3 27 27 H 1.08994 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46985 * 300.00293 * 1 2 3 29 29 H 1.09002 * 109.47326 * 239.99953 * 2 1 3 30 30 H 1.09004 * 109.47016 * 120.00323 * 2 1 3 31 31 H 1.08003 * 120.49870 * 0.02562 * 7 6 4 32 32 H 1.07999 * 119.55106 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47257 * 34.73164 * 11 10 9 34 34 H 1.08998 * 109.47080 * 154.73436 * 11 10 9 35 35 H 1.00906 * 110.99708 * 298.76008 * 12 11 10 36 36 H 0.96998 * 120.00374 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.47029 * 184.24868 * 23 13 12 38 38 H 1.08996 * 109.47896 * 304.24986 * 23 13 12 39 39 H 1.08996 * 109.46912 * 294.90082 * 24 23 13 40 40 H 1.08998 * 109.47084 * 54.89767 * 24 23 13 41 41 H 1.08998 * 109.47258 * 174.89660 * 24 23 13 42 42 H 1.07999 * 120.50248 * 180.29526 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9134 0.0000 7 6 3.0811 4.0364 -0.0016 8 6 3.6518 5.2942 -0.0026 9 7 4.9616 5.4434 0.0032 10 6 5.7831 4.4128 -0.0006 11 6 7.2715 4.6488 -0.0002 12 7 7.7369 4.8433 -1.3798 13 6 9.1621 5.1981 -1.4096 14 1 9.4042 5.8029 -0.5357 15 6 9.9931 3.9410 -1.3964 16 1 9.5108 2.9751 -1.3684 17 6 11.3691 4.0240 -1.4192 18 7 11.9565 5.2002 -1.4529 19 14 12.3994 2.4659 -1.4022 20 1 12.6509 2.0236 -2.7973 21 1 13.6943 2.7359 -0.7274 22 1 11.6717 1.3995 -0.6684 23 6 9.4628 5.9949 -2.6806 24 6 8.6997 7.3206 -2.6440 25 6 5.2983 3.1189 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0072 3.9217 -0.0021 32 1 3.0163 6.1674 -0.0034 33 1 7.4982 5.5378 0.5885 34 1 7.7760 3.7862 0.4353 35 1 7.5563 4.0244 -1.9412 36 1 12.9246 5.2587 -1.4693 37 1 10.5329 6.1933 -2.7404 38 1 9.1506 5.4200 -3.5524 39 1 7.6281 7.1239 -2.6756 40 1 8.9441 7.8552 -1.7262 41 1 8.9833 7.9270 -3.5042 42 1 5.9773 2.2791 0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:38 Heat of formation + Delta-G solvation = -59.740105 kcal Electronic energy + Delta-G solvation = -22706.981326 eV Core-core repulsion = 19265.808929 eV Total energy + Delta-G solvation = -3441.172397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.93228 -39.76916 -36.86504 -36.23084 -33.40464 -32.75088 -31.83467 -31.57124 -30.23277 -26.87044 -25.65605 -24.71863 -23.16325 -22.79703 -22.11327 -20.78399 -19.50109 -18.10176 -17.25760 -16.84562 -16.70942 -16.01601 -15.70452 -14.95392 -14.85989 -14.57419 -14.23808 -13.80115 -13.63888 -13.38963 -13.24490 -13.13706 -12.60432 -12.31743 -12.20976 -11.95061 -11.87926 -11.52354 -11.17850 -11.06890 -10.93764 -10.88207 -10.86276 -10.62449 -10.17497 -9.98715 -9.65764 -9.57149 -9.35974 -9.07926 -8.97127 -8.38611 -7.30556 -6.00453 -4.13776 0.51042 1.08946 2.27382 2.42853 3.27547 3.34830 3.37638 3.78950 4.28892 4.36606 4.40081 4.56846 4.60789 4.69181 4.88045 4.90598 5.04048 5.23492 5.25644 5.39564 5.45394 5.55886 5.60933 5.65136 5.79879 5.95482 6.10682 6.26237 6.33025 6.46228 6.56148 6.62913 6.76499 7.14269 7.23026 7.42913 7.46431 7.58762 7.77482 8.04663 8.06247 8.10850 8.29660 8.60887 8.97870 9.54148 10.99787 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003460 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.892168 B = 8091.437151 C = 9334.850804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.496 6.496 6 C -0.082 4.082 7 C -0.132 4.132 8 C 0.093 3.907 9 N -0.441 5.441 10 C 0.150 3.850 11 C 0.111 3.889 12 N -0.678 5.678 13 C 0.217 3.783 14 H 0.035 0.965 15 C -0.549 4.549 16 H 0.054 0.946 17 C 0.069 3.931 18 N -0.884 5.884 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.105 4.105 24 C -0.136 4.136 25 C -0.106 4.106 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.162 0.838 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.328 0.672 36 H 0.262 0.738 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.047 0.953 40 H 0.037 0.963 41 H 0.023 0.977 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.281 -4.996 3.560 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.356 3.644 5 O -0.383 6.383 6 C -0.091 4.091 7 C -0.153 4.153 8 C -0.065 4.065 9 N -0.151 5.151 10 C 0.011 3.989 11 C -0.019 4.019 12 N -0.308 5.308 13 C 0.109 3.891 14 H 0.053 0.947 15 C -0.588 4.588 16 H 0.072 0.928 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.144 4.144 24 C -0.193 4.193 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.163 0.837 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.752 -3.736 3.544 21.381 hybrid contribution 0.664 -2.826 0.166 2.907 sum -20.088 -6.562 3.710 21.455 Atomic orbital electron populations 1.21810 0.92377 1.03104 1.03636 1.23086 0.95452 0.79754 1.02917 1.86525 1.23566 1.32693 1.84190 1.21139 0.80699 0.89659 0.72920 1.90859 1.60400 1.42210 1.44868 1.19384 0.94095 0.90312 1.05358 1.22393 1.01269 0.92770 0.98834 1.22856 0.91328 0.96398 0.95873 1.67479 1.04131 1.35273 1.08170 1.21634 0.97535 0.87116 0.92600 1.20746 0.85366 1.01754 0.94066 1.60890 1.22094 1.40490 1.07336 1.19187 0.80592 0.94252 0.95027 0.94692 1.21867 0.92010 0.93020 1.51881 0.92771 1.24921 0.97946 0.95874 0.94674 1.69877 1.09773 1.22699 1.49822 0.86654 0.79816 0.83712 0.78174 1.20641 1.21195 1.20012 1.21491 1.01744 0.93471 0.97661 1.21683 1.00460 0.98403 0.98766 1.22258 0.93851 0.99543 0.97023 0.91343 0.90090 0.91385 0.90956 0.91013 0.83720 0.82089 0.89702 0.93240 0.85638 0.92829 0.89108 0.95131 0.93360 0.94372 0.95757 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.15 0.38 -0.45 16 2 C 0.06 0.52 6.19 37.15 0.23 0.75 16 3 O -0.35 -3.84 9.58 -40.44 -0.39 -4.23 16 4 C 0.51 6.85 7.92 34.75 0.28 7.12 16 5 O -0.50 -7.90 16.23 -19.21 -0.31 -8.21 16 6 C -0.08 -1.10 5.91 -104.66 -0.62 -1.72 16 7 C -0.13 -1.46 9.71 -39.01 -0.38 -1.84 16 8 C 0.09 1.11 11.17 -17.60 -0.20 0.91 16 9 N -0.44 -6.91 10.25 -9.53 -0.10 -7.01 16 10 C 0.15 2.44 6.34 -82.63 -0.52 1.92 16 11 C 0.11 2.07 5.81 -4.98 -0.03 2.04 16 12 N -0.68 -14.17 5.72 -109.22 -0.62 -14.80 16 13 C 0.22 5.29 1.98 -68.87 -0.14 5.16 16 14 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 15 C -0.55 -14.55 8.47 -34.44 -0.29 -14.84 16 16 H 0.05 1.42 7.73 -52.49 -0.41 1.02 16 17 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 18 N -0.88 -24.76 11.30 55.43 0.63 -24.14 16 19 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 24 C -0.14 -2.85 9.73 37.16 0.36 -2.49 16 25 C -0.11 -1.59 9.29 -39.01 -0.36 -1.95 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.15 1.19 7.71 -52.48 -0.40 0.79 16 32 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.08 1.63 7.93 -51.93 -0.41 1.22 16 34 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 35 H 0.33 6.81 8.45 -39.29 -0.33 6.48 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.09 2.42 5.97 -51.93 -0.31 2.11 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.99 7.88 -51.93 -0.41 0.58 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.15 2.24 7.74 -52.49 -0.41 1.84 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -30.00 358.10 -8.38 -38.38 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.43 Total: 4.89 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.53 Total: -6.30 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -0.10 Total: -45.94 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.70 Total: -12.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.00 -8.38 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.359 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds