Wall clock time and date at job start Tue Mar 31 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47401 * 2 1 4 4 C 1.34680 * 117.00022 * 179.97438 * 3 2 1 5 5 O 1.21429 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.48043 * 119.99671 * 179.97438 * 4 3 2 7 7 C 1.39877 * 120.93352 * 359.97438 * 6 4 3 8 8 C 1.38122 * 119.00080 * 180.02562 * 7 6 4 9 9 N 1.31828 * 120.90136 * 359.73269 * 8 7 6 10 10 C 1.31797 * 122.05724 * 0.55674 * 9 8 7 11 11 C 1.50701 * 119.54700 * 179.71271 * 10 9 8 12 12 N 1.46900 * 109.47162 * 274.73346 * 11 10 9 13 13 C 1.46899 * 110.99940 * 174.80267 * 12 11 10 14 14 H 1.08998 * 109.47334 * 325.87003 * 13 12 11 15 15 C 1.50702 * 109.46845 * 85.87217 * 13 12 11 16 16 H 1.08001 * 120.00298 * 359.97438 * 15 13 12 17 17 C 1.37875 * 119.99908 * 180.02562 * 15 13 12 18 18 N 1.31516 * 120.00259 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00314 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46988 * 89.99671 * 19 17 15 21 21 H 1.48496 * 109.47169 * 209.99910 * 19 17 15 22 22 H 1.48497 * 109.46626 * 329.99930 * 19 17 15 23 23 C 1.52997 * 109.47019 * 205.86522 * 13 12 11 24 24 C 1.53003 * 109.47046 * 64.25239 * 23 13 12 25 25 C 1.38166 * 120.90241 * 359.44099 * 10 9 8 26 26 H 1.09004 * 109.47016 * 59.99677 * 1 2 3 27 27 H 1.08994 * 109.47433 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46985 * 300.00293 * 1 2 3 29 29 H 1.09002 * 109.47326 * 239.99953 * 2 1 3 30 30 H 1.09004 * 109.47016 * 120.00323 * 2 1 3 31 31 H 1.08003 * 120.49870 * 0.02562 * 7 6 4 32 32 H 1.07999 * 119.55106 * 180.02562 * 8 7 6 33 33 H 1.09004 * 109.47257 * 34.73164 * 11 10 9 34 34 H 1.08998 * 109.47080 * 154.73436 * 11 10 9 35 35 H 1.00906 * 110.99708 * 298.76008 * 12 11 10 36 36 H 0.96998 * 120.00374 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.47029 * 184.24868 * 23 13 12 38 38 H 1.08996 * 109.47896 * 304.24986 * 23 13 12 39 39 H 1.08996 * 109.46912 * 294.90082 * 24 23 13 40 40 H 1.08998 * 109.47084 * 54.89767 * 24 23 13 41 41 H 1.08998 * 109.47258 * 174.89660 * 24 23 13 42 42 H 1.07999 * 120.50248 * 180.29526 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3492 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9150 2.9134 0.0000 7 6 3.0811 4.0364 -0.0016 8 6 3.6518 5.2942 -0.0026 9 7 4.9616 5.4434 0.0032 10 6 5.7831 4.4128 -0.0006 11 6 7.2715 4.6488 -0.0002 12 7 7.7369 4.8433 -1.3798 13 6 9.1621 5.1981 -1.4096 14 1 9.4042 5.8029 -0.5357 15 6 9.9931 3.9410 -1.3964 16 1 9.5108 2.9751 -1.3684 17 6 11.3691 4.0240 -1.4192 18 7 11.9565 5.2002 -1.4529 19 14 12.3994 2.4659 -1.4022 20 1 12.6509 2.0236 -2.7973 21 1 13.6943 2.7359 -0.7274 22 1 11.6717 1.3995 -0.6684 23 6 9.4628 5.9949 -2.6806 24 6 8.6997 7.3206 -2.6440 25 6 5.2983 3.1189 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0072 3.9217 -0.0021 32 1 3.0163 6.1674 -0.0034 33 1 7.4982 5.5378 0.5885 34 1 7.7760 3.7862 0.4353 35 1 7.5563 4.0244 -1.9412 36 1 12.9246 5.2587 -1.4693 37 1 10.5329 6.1933 -2.7404 38 1 9.1506 5.4200 -3.5524 39 1 7.6281 7.1239 -2.6756 40 1 8.9441 7.8552 -1.7262 41 1 8.9833 7.9270 -3.5042 42 1 5.9773 2.2791 0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:37 Heat of formation + Delta-G solvation = -77.758212 kcal Electronic energy + Delta-G solvation = -22707.762649 eV Core-core repulsion = 19265.808929 eV Total energy + Delta-G solvation = -3441.953721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.96360 -40.82972 -38.03197 -37.81978 -34.94011 -33.97197 -33.36885 -32.48142 -31.69410 -28.65060 -26.79186 -26.19361 -24.46400 -23.90007 -23.36369 -21.89002 -21.40049 -19.14457 -18.78601 -18.16551 -17.72164 -17.20298 -16.85119 -16.72147 -16.06238 -15.86747 -15.37340 -15.31844 -14.84537 -14.71313 -14.56628 -14.22861 -13.67566 -13.65257 -13.54315 -13.12478 -13.07110 -12.99748 -12.84964 -12.63028 -12.51706 -12.46177 -12.08087 -11.99567 -11.60544 -11.52480 -11.45876 -11.07751 -11.02981 -10.51937 -10.46275 -10.10783 -9.10321 -8.06287 -6.28164 -0.54750 0.02271 1.36842 1.38070 1.38387 1.40156 1.48885 2.39906 2.69511 3.13519 3.24294 3.38777 3.61347 3.85683 3.93418 3.98353 3.98738 4.05455 4.31583 4.42733 4.47401 4.61546 4.68003 4.75498 4.78786 4.85083 4.87237 4.92991 4.95228 4.98106 5.07943 5.19218 5.33372 5.43762 5.51123 5.55384 5.62523 5.77118 6.08780 6.16194 6.33680 6.47795 6.73538 6.95603 6.98273 7.43152 8.90902 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003460 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.892168 B = 8091.437151 C = 9334.850804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.345 6.345 4 C 0.517 3.483 5 O -0.530 6.530 6 C -0.090 4.090 7 C -0.104 4.104 8 C 0.097 3.903 9 N -0.466 5.466 10 C 0.133 3.867 11 C 0.117 3.883 12 N -0.671 5.671 13 C 0.224 3.776 14 H 0.004 0.996 15 C -0.562 4.562 16 H 0.051 0.949 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.273 1.273 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.116 4.116 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.184 0.816 32 H 0.203 0.797 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.328 0.672 36 H 0.263 0.737 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.053 0.947 40 H 0.031 0.969 41 H 0.044 0.956 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.148 -5.284 3.416 24.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 O -0.261 6.261 4 C 0.362 3.638 5 O -0.420 6.420 6 C -0.100 4.100 7 C -0.124 4.124 8 C -0.060 4.060 9 N -0.176 5.176 10 C -0.004 4.004 11 C -0.013 4.013 12 N -0.300 5.300 13 C 0.116 3.884 14 H 0.022 0.978 15 C -0.601 4.601 16 H 0.069 0.931 17 C -0.178 4.178 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.140 4.140 24 C -0.180 4.180 25 C -0.137 4.137 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.201 0.799 32 H 0.219 0.781 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.640 -4.027 3.402 24.221 hybrid contribution 1.382 -2.739 0.241 3.078 sum -22.258 -6.767 3.644 23.547 Atomic orbital electron populations 1.21831 0.89711 1.04564 1.04064 1.23421 0.97445 0.78468 1.02818 1.86518 1.21816 1.34311 1.83444 1.21142 0.81357 0.89202 0.72105 1.90846 1.61346 1.43193 1.46586 1.19481 0.93597 0.91316 1.05559 1.22801 1.02813 0.91389 0.95369 1.23541 0.90185 0.98242 0.94076 1.67406 1.05961 1.35277 1.08995 1.21041 0.96088 0.87918 0.95317 1.20588 0.87703 1.00627 0.92394 1.60799 1.19735 1.40544 1.08886 1.18954 0.82358 0.93208 0.93909 0.97776 1.22161 0.92649 0.93642 1.51648 0.93111 1.25635 0.99085 0.98591 0.94498 1.69999 1.09966 1.24367 1.50468 0.85695 0.78238 0.80306 0.78209 1.20163 1.20831 1.19789 1.21357 1.00443 0.95046 0.97151 1.21528 1.00235 0.96828 0.99365 1.22080 0.94920 0.98580 0.98115 0.90952 0.88134 0.90848 0.91251 0.91105 0.79879 0.78064 0.90912 0.94356 0.85575 0.92801 0.91841 0.95428 0.92745 0.94982 0.93712 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 10.29 71.98 0.74 -0.42 16 2 C 0.05 0.77 6.19 71.98 0.45 1.22 16 3 O -0.34 -6.72 9.58 -55.89 -0.54 -7.25 16 4 C 0.52 13.22 7.92 70.42 0.56 13.78 16 5 O -0.53 -16.91 16.23 20.07 0.33 -16.58 16 6 C -0.09 -2.28 5.91 -19.89 -0.12 -2.40 16 7 C -0.10 -1.93 9.71 22.64 0.22 -1.71 16 8 C 0.10 2.00 11.17 84.67 0.95 2.95 16 9 N -0.47 -14.03 10.25 -184.05 -1.89 -15.92 16 10 C 0.13 4.39 6.34 42.55 0.27 4.66 16 11 C 0.12 4.55 5.81 85.56 0.50 5.05 16 12 N -0.67 -28.83 5.72 -499.46 -2.86 -31.68 16 13 C 0.22 11.32 1.98 44.17 0.09 11.41 16 14 H 0.00 0.24 7.70 -2.39 -0.02 0.22 16 15 C -0.56 -30.63 8.47 25.60 0.22 -30.41 16 16 H 0.05 2.74 7.73 -2.91 -0.02 2.72 16 17 C 0.02 1.23 5.29 84.65 0.45 1.68 16 18 N -0.91 -52.14 11.30 21.45 0.24 -51.90 16 19 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 C -0.10 -4.96 5.45 30.59 0.17 -4.79 16 24 C -0.12 -5.10 9.73 71.98 0.70 -4.40 16 25 C -0.12 -3.52 9.29 22.64 0.21 -3.31 16 26 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.18 2.02 7.71 -2.91 -0.02 2.00 16 32 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.07 2.95 7.93 -2.38 -0.02 2.93 16 34 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 35 H 0.33 14.03 8.45 -89.69 -0.76 13.27 16 36 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 37 H 0.06 3.47 5.97 -2.39 -0.01 3.46 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 2.18 7.88 -2.39 -0.02 2.17 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.14 4.34 7.74 -2.91 -0.02 4.32 16 Total: -1.00 -66.27 358.10 2.96 -63.30 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.26 Total: 20.89 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.39 Total: -6.70 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.50 Total: -99.50 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.21 Total: -23.83 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.27 2.96 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.455 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds