Wall clock time and date at job start Tue Mar 31 2020 06:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47041 * 2 1 4 4 H 1.09005 * 109.47224 * 181.86551 * 3 2 1 5 5 C 1.50702 * 109.47201 * 61.86825 * 3 2 1 6 6 H 1.07993 * 119.99795 * 239.99956 * 5 3 2 7 7 C 1.37883 * 119.99871 * 59.99893 * 5 3 2 8 8 N 1.31516 * 119.99634 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 119.99729 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47631 * 90.00046 * 9 7 5 11 11 H 1.48507 * 109.46903 * 209.99768 * 9 7 5 12 12 H 1.48502 * 109.47588 * 329.99528 * 9 7 5 13 13 N 1.46898 * 109.47286 * 301.86961 * 3 2 1 14 14 C 1.46910 * 110.99814 * 278.91149 * 13 3 2 15 15 C 1.50700 * 109.46781 * 175.00074 * 14 13 3 16 16 C 1.37992 * 119.58699 * 94.72912 * 15 14 13 17 17 C 1.39248 * 119.08725 * 179.75105 * 16 15 14 18 18 O 1.35739 * 120.84914 * 180.26123 * 17 16 15 19 19 C 1.42900 * 117.00068 * 185.60386 * 18 17 16 20 20 C 1.54034 * 113.81609 * 252.88362 * 19 18 17 21 21 O 1.44179 * 85.51970 * 223.19774 * 20 19 18 22 22 C 1.44176 * 93.33611 * 24.19211 * 21 20 19 23 23 C 1.39292 * 118.30469 * 0.50609 * 17 16 15 24 24 C 1.37946 * 119.09501 * 359.75807 * 23 17 16 25 25 N 1.31950 * 119.58682 * 274.99465 * 15 14 13 26 26 H 1.08994 * 109.47732 * 55.02269 * 1 2 3 27 27 H 1.09006 * 109.46816 * 295.02472 * 1 2 3 28 28 H 1.08999 * 109.46957 * 175.03526 * 1 2 3 29 29 H 1.08995 * 109.47341 * 120.00383 * 2 1 3 30 30 H 1.09007 * 109.46704 * 240.00408 * 2 1 3 31 31 H 0.96997 * 119.99509 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00242 * 154.96535 * 13 3 2 33 33 H 1.08997 * 109.47014 * 294.99782 * 14 13 3 34 34 H 1.08997 * 109.46595 * 55.00204 * 14 13 3 35 35 H 1.07994 * 120.45763 * 359.97438 * 16 15 14 36 36 H 1.08998 * 112.99984 * 24.87188 * 19 18 17 37 37 H 1.08998 * 113.86340 * 337.34691 * 20 19 18 38 38 H 1.09007 * 113.86388 * 109.04871 * 20 19 18 39 39 H 1.08999 * 113.86320 * 221.65584 * 22 21 20 40 40 H 1.09002 * 113.98446 * 89.97229 * 22 21 20 41 41 H 1.08007 * 120.45106 * 179.77332 * 23 17 16 42 42 H 1.07996 * 119.58967 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0335 5 6 1.5758 2.1394 1.2530 6 1 0.9524 3.0184 1.1825 7 6 1.9472 1.6548 2.4893 8 7 2.7061 0.5841 2.5749 9 14 1.3713 2.5182 4.0423 10 1 0.0762 1.9382 4.4800 11 1 2.3828 2.3358 5.1142 12 1 1.1970 3.9672 3.7676 13 7 1.5138 2.1479 -1.1762 14 6 2.3081 1.8408 -2.3732 15 6 1.6688 2.4813 -3.5782 16 6 2.1026 3.7210 -4.0016 17 6 1.5081 4.3008 -5.1193 18 8 1.9106 5.5164 -5.5699 19 6 1.1643 6.0892 -6.6455 20 6 1.9056 6.0713 -7.9956 21 8 1.4180 7.4191 -8.1527 22 6 1.2762 7.6230 -6.7325 23 6 0.4863 3.6041 -5.7601 24 6 0.1060 2.3714 -5.2715 25 7 0.6975 1.8521 -4.2121 26 1 -0.3634 0.5891 -0.8420 27 1 -0.3633 0.4347 0.9313 28 1 -0.3633 -1.0238 -0.0889 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.9676 0.2434 3.4446 32 1 1.4749 3.1430 -1.0136 33 1 3.3187 2.2297 -2.2483 34 1 2.3492 0.7608 -2.5147 35 1 2.8948 4.2327 -3.4754 36 1 0.1406 5.7189 -6.6983 37 1 2.9894 6.0025 -7.9028 38 1 1.4920 5.3659 -8.7164 39 1 0.3634 8.1484 -6.4514 40 1 2.1667 8.0283 -6.2520 41 1 -0.0013 4.0231 -6.6280 42 1 -0.6856 1.8245 -5.7619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:48 Heat of formation + Delta-G solvation = -28.434033 kcal Electronic energy + Delta-G solvation = -22856.914592 eV Core-core repulsion = 19417.099728 eV Total energy + Delta-G solvation = -3439.814864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = -0.58 seconds Orbital eigenvalues (eV) -42.08071 -41.02551 -38.90850 -37.96627 -34.85191 -33.13638 -32.48987 -31.56483 -29.94616 -28.58494 -27.67169 -26.32287 -24.99266 -24.45041 -23.32495 -21.52293 -20.90256 -19.55461 -18.45654 -18.04411 -17.46597 -17.10469 -16.91139 -16.75244 -16.43210 -15.88524 -15.78254 -15.41963 -15.31754 -14.91024 -14.47675 -14.10239 -14.03257 -13.96983 -13.66150 -13.47522 -13.05553 -12.82494 -12.67058 -12.54240 -12.40545 -12.25753 -11.98144 -11.87918 -11.65029 -11.30547 -10.84421 -10.79113 -10.52471 -10.40398 -10.07647 -9.88137 -9.00570 -8.08153 -6.20182 0.08672 0.35609 1.43294 1.44855 1.53909 1.90246 2.43831 2.51092 2.76335 3.05756 3.20830 3.35051 3.60659 3.72945 3.80062 3.95152 4.05553 4.18332 4.25820 4.31099 4.46748 4.49684 4.59523 4.63331 4.73186 4.81511 4.83645 4.84896 4.93941 4.97101 4.97740 5.05590 5.33937 5.40570 5.52519 5.57546 5.73170 5.81009 5.90085 6.16852 6.30985 6.48394 6.77320 7.01033 7.16491 7.48343 8.97129 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.003032 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.961529 B = 9233.347567 C = 9954.509029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C 0.225 3.775 4 H -0.032 1.032 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.110 3.890 15 C 0.170 3.830 16 C -0.210 4.210 17 C 0.163 3.837 18 O -0.306 6.306 19 C 0.002 3.998 20 C 0.023 3.977 21 O -0.390 6.390 22 C 0.044 3.956 23 C -0.257 4.257 24 C 0.131 3.869 25 N -0.519 5.519 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.261 0.739 32 H 0.331 0.669 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.171 0.829 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 10.231 -20.848 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C 0.117 3.883 4 H -0.014 1.014 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.301 5.301 14 C -0.020 4.020 15 C 0.033 3.967 16 C -0.231 4.231 17 C 0.110 3.890 18 O -0.218 6.218 19 C -0.054 4.054 20 C -0.053 4.053 21 O -0.310 6.310 22 C -0.032 4.032 23 C -0.278 4.278 24 C -0.026 4.026 25 N -0.232 5.232 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.189 0.811 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.145 9.145 -20.708 23.014 hybrid contribution 1.033 1.307 1.035 1.961 sum -3.112 10.452 -19.673 22.494 Atomic orbital electron populations 1.21274 0.96113 0.98364 1.00512 1.21330 0.96172 0.97726 0.98590 1.18914 0.90661 0.92011 0.86748 1.01412 1.21391 1.31330 1.12042 0.91245 0.92531 1.25617 0.95146 0.95643 1.01818 1.70015 1.37037 1.23617 1.24933 0.85599 0.77868 0.79137 0.79278 1.20381 1.21089 1.19242 1.60526 1.53754 1.12957 1.02894 1.20728 0.93551 1.00182 0.87549 1.20902 0.91256 0.90330 0.94192 1.21368 1.05753 0.97402 0.98588 1.19284 0.92525 0.85167 0.91997 1.86198 1.54647 1.29994 1.50952 1.26619 0.98372 0.95148 0.85225 1.24754 1.00593 0.84474 0.95529 1.89749 1.85786 1.31616 1.23837 1.24457 1.04744 0.93231 0.80741 1.22454 1.01432 0.98506 1.05377 1.23131 0.96704 0.92333 0.90401 1.67552 1.09062 1.37334 1.09218 0.92895 0.95089 0.94836 0.92117 0.96229 0.92984 0.85188 0.94017 0.90941 0.84193 0.85145 0.88927 0.86239 0.85963 0.88534 0.81139 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 9.50 71.98 0.68 -4.16 16 2 C -0.10 -4.97 5.53 30.59 0.17 -4.80 16 3 C 0.22 11.39 2.29 44.17 0.10 11.49 16 4 H -0.03 -1.77 7.92 -2.38 -0.02 -1.79 16 5 C -0.52 -28.27 7.52 25.60 0.19 -28.08 16 6 H 0.06 3.03 7.68 -2.91 -0.02 3.01 16 7 C 0.02 0.93 5.30 84.66 0.45 1.37 16 8 N -0.92 -52.61 11.31 21.45 0.24 -52.37 16 9 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.67 -28.75 5.32 -499.44 -2.66 -31.41 16 14 C 0.11 4.08 5.78 85.55 0.49 4.57 16 15 C 0.17 5.50 6.33 42.48 0.27 5.77 16 16 C -0.21 -5.85 9.68 22.45 0.22 -5.64 16 17 C 0.16 3.74 6.73 22.77 0.15 3.90 16 18 O -0.31 -6.07 10.18 -90.64 -0.92 -6.99 16 19 C 0.00 0.03 3.99 31.29 0.12 0.16 16 20 C 0.02 0.28 9.05 72.27 0.65 0.93 16 21 O -0.39 -6.20 12.45 -148.98 -1.86 -8.06 16 22 C 0.04 0.54 9.05 72.27 0.65 1.20 16 23 C -0.26 -4.82 9.09 22.45 0.20 -4.62 16 24 C 0.13 2.98 11.17 84.60 0.95 3.92 16 25 N -0.52 -16.40 10.27 -184.13 -1.89 -18.29 16 26 H 0.05 2.39 7.39 -2.39 -0.02 2.37 16 27 H 0.03 1.50 7.45 -2.38 -0.02 1.48 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 3.37 6.02 -2.39 -0.01 3.36 16 30 H 0.02 0.91 7.19 -2.38 -0.02 0.89 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.33 13.92 8.37 -89.69 -0.75 13.17 16 33 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.07 2.87 7.10 -2.39 -0.02 2.85 16 35 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.13 1.26 5.99 -2.39 -0.01 1.25 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.17 1.84 6.04 -2.91 -0.02 1.82 16 42 H 0.19 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -65.59 345.72 0.53 -65.05 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.28 Total: 20.54 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 5.31 Total: -13.99 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -4.31 Total: -102.07 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -2.78 Total: -15.05 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.59 0.53 -65.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.621 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.58 seconds