Wall clock time and date at job start Tue Mar 31 2020 06:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 H 1.09003 * 109.46723 * 179.43743 * 3 2 1 5 5 C 1.50704 * 109.46902 * 299.43212 * 3 2 1 6 6 H 1.07997 * 119.99834 * 120.00897 * 5 3 2 7 7 C 1.37872 * 120.00078 * 300.00475 * 5 3 2 8 8 N 1.31519 * 120.00233 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00048 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46901 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47202 * 119.99766 * 9 7 5 12 12 H 1.48501 * 109.46951 * 239.99677 * 9 7 5 13 13 N 1.46894 * 109.47623 * 59.43492 * 3 2 1 14 14 C 1.46897 * 110.99917 * 88.81132 * 13 3 2 15 15 C 1.50701 * 109.47290 * 175.16238 * 14 13 3 16 16 C 1.37989 * 119.59099 * 94.99753 * 15 14 13 17 17 C 1.39247 * 119.09324 * 180.02562 * 16 15 14 18 18 O 1.35736 * 120.84736 * 179.97438 * 17 16 15 19 19 C 1.42902 * 117.00218 * 185.30900 * 18 17 16 20 20 C 1.54035 * 113.81688 * 252.86012 * 19 18 17 21 21 O 1.44180 * 85.51676 * 223.19223 * 20 19 18 22 22 C 1.44181 * 93.33758 * 24.19700 * 21 20 19 23 23 C 1.39279 * 118.30420 * 0.02562 * 17 16 15 24 24 C 1.37948 * 119.09447 * 359.97438 * 23 17 16 25 25 N 1.31947 * 119.58780 * 274.73186 * 15 14 13 26 26 H 1.09004 * 109.47116 * 175.23366 * 1 2 3 27 27 H 1.08995 * 109.46960 * 55.23186 * 1 2 3 28 28 H 1.08998 * 109.47571 * 295.23209 * 1 2 3 29 29 H 1.08998 * 109.46943 * 119.99740 * 2 1 3 30 30 H 1.08993 * 109.47247 * 239.99322 * 2 1 3 31 31 H 0.96998 * 119.99908 * 179.97438 * 8 7 5 32 32 H 1.00897 * 111.00079 * 212.76806 * 13 3 2 33 33 H 1.09003 * 109.47811 * 295.16057 * 14 13 3 34 34 H 1.09008 * 109.47378 * 55.16503 * 14 13 3 35 35 H 1.08006 * 120.45308 * 0.02761 * 16 15 14 36 36 H 1.08996 * 112.99517 * 24.84487 * 19 18 17 37 37 H 1.08994 * 113.86597 * 337.34424 * 20 19 18 38 38 H 1.09003 * 113.86251 * 109.04510 * 20 19 18 39 39 H 1.09002 * 113.85958 * 221.66148 * 22 21 20 40 40 H 1.08996 * 113.98312 * 89.96752 * 22 21 20 41 41 H 1.08009 * 120.45367 * 180.02562 * 23 17 16 42 42 H 1.08008 * 119.58805 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4425 0.0101 5 6 1.5491 2.1488 -1.2375 6 1 0.9274 3.0272 -1.1471 7 6 1.8938 1.6736 -2.4850 8 7 2.6513 0.6042 -2.5951 9 14 1.2859 2.5494 -4.0189 10 1 0.4581 3.7182 -3.6263 11 1 2.4487 3.0131 -4.8178 12 1 0.4682 1.6137 -4.8319 13 7 1.5392 2.1390 1.1925 14 6 2.4594 1.9714 2.3252 15 6 1.9755 2.7941 3.4915 16 6 1.1924 2.2048 4.4628 17 6 0.7506 2.9747 5.5356 18 8 -0.0217 2.4316 6.5107 19 6 -0.5254 3.3204 7.5100 20 6 0.1629 3.1704 8.8798 21 8 -1.1659 3.2657 9.4312 22 6 -1.7937 2.8065 8.2172 23 6 1.1206 4.3167 5.5820 24 6 1.9060 4.8313 4.5714 25 7 2.3104 4.0677 3.5738 26 1 -0.3633 -1.0241 -0.0854 27 1 -0.3633 0.5860 -0.8442 28 1 -0.3634 0.4381 0.9296 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.8935 0.2696 -3.4728 32 1 1.3776 3.1160 0.9994 33 1 2.4951 0.9204 2.6120 34 1 3.4565 2.3031 2.0355 35 1 0.9258 1.1605 4.3919 36 1 -0.6013 4.3511 7.1639 37 1 0.6351 2.2000 9.0322 38 1 0.8102 4.0073 9.1420 39 1 -2.6982 3.3549 7.9538 40 1 -1.9201 1.7252 8.1654 41 1 0.7976 4.9457 6.3985 42 1 2.1972 5.8710 4.5992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156580.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:53 Heat of formation + Delta-G solvation = -9.463398 kcal Electronic energy + Delta-G solvation = -22860.002810 eV Core-core repulsion = 19421.010575 eV Total energy + Delta-G solvation = -3438.992235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.32793 -40.14449 -37.97859 -36.20142 -33.17818 -31.58016 -31.38082 -30.07856 -29.21710 -27.13330 -26.77255 -24.73072 -23.50632 -23.10707 -22.25016 -20.73366 -19.04779 -18.62984 -17.34521 -16.80847 -16.51422 -16.12480 -16.03225 -15.46818 -15.00675 -14.87618 -14.31389 -13.96935 -13.79145 -13.57943 -13.30947 -13.21266 -12.81347 -12.64114 -12.14208 -12.00780 -11.78890 -11.53850 -11.32374 -11.16710 -10.93253 -10.71459 -10.38933 -10.25777 -10.09465 -9.75540 -9.43850 -9.33598 -9.04740 -8.92993 -8.74585 -8.45122 -7.26416 -6.00891 -4.06166 1.11726 1.34117 2.71286 3.07514 3.29715 3.37888 3.42017 3.60474 3.85861 4.20999 4.39807 4.44780 4.55190 4.61562 4.80553 4.84351 4.96603 5.10969 5.20938 5.30094 5.31378 5.43148 5.50242 5.55578 5.71142 5.81539 5.99126 6.13407 6.30474 6.54066 6.58367 6.69768 6.86974 7.03643 7.24617 7.29946 7.49858 7.74920 7.80757 7.85981 8.13800 8.26526 8.37462 8.65352 9.02622 9.58494 11.04991 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028318 B = 0.002924 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.548853 B = 9572.793677 C = 9884.128486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.005 0.995 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.106 3.894 15 C 0.183 3.817 16 C -0.183 4.183 17 C 0.161 3.839 18 O -0.297 6.297 19 C 0.009 3.991 20 C 0.023 3.977 21 O -0.371 6.371 22 C 0.046 3.954 23 C -0.274 4.274 24 C 0.138 3.862 25 N -0.501 5.501 26 H 0.013 0.987 27 H 0.056 0.944 28 H 0.041 0.959 29 H 0.010 0.990 30 H 0.087 0.913 31 H 0.260 0.740 32 H 0.336 0.664 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.143 0.857 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.134 0.866 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 5.080 20.420 21.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.022 0.978 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.309 5.309 14 C -0.024 4.024 15 C 0.046 3.954 16 C -0.205 4.205 17 C 0.109 3.891 18 O -0.209 6.209 19 C -0.048 4.048 20 C -0.054 4.054 21 O -0.290 6.290 22 C -0.031 4.031 23 C -0.295 4.295 24 C -0.020 4.020 25 N -0.213 5.213 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.161 0.839 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.151 0.849 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.413 4.644 20.110 21.105 hybrid contribution -0.062 0.862 -0.509 1.003 sum -4.475 5.506 19.600 20.845 Atomic orbital electron populations 1.21451 0.97559 0.97443 1.01276 1.21442 0.94989 0.98183 0.99525 1.19191 0.93179 0.91409 0.85401 0.97767 1.21236 1.31577 1.11903 0.90330 0.92265 1.24875 0.95032 0.95006 0.98912 1.69891 1.36556 1.22699 1.23592 0.86521 0.78547 0.79694 0.83142 1.19779 1.21136 1.21018 1.60861 1.45411 1.18031 1.06602 1.20898 0.95297 0.97226 0.88987 1.21366 0.90284 0.89913 0.93840 1.21354 1.03041 1.02306 0.93754 1.19301 0.89910 0.91893 0.88044 1.86197 1.62771 1.36489 1.35396 1.26320 0.95022 0.96334 0.87095 1.24634 0.87383 1.03606 0.89810 1.89758 1.18427 1.86460 1.34366 1.24312 0.95929 1.01610 0.81235 1.22104 1.07778 0.95330 1.04337 1.22522 0.91687 0.99467 0.88305 1.67625 1.23556 1.05857 1.24296 0.96758 0.92536 0.94022 0.97111 0.89441 0.93007 0.84659 0.90180 0.93748 0.83901 0.86823 0.88761 0.88267 0.87779 0.88543 0.84862 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.46 5.64 -26.73 -0.15 -2.61 16 3 C 0.22 5.31 2.32 -68.87 -0.16 5.15 16 4 H 0.00 0.13 7.66 -51.93 -0.40 -0.27 16 5 C -0.51 -13.72 7.27 -34.44 -0.25 -13.97 16 6 H 0.06 1.59 7.56 -52.49 -0.40 1.20 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -14.32 5.64 -109.22 -0.62 -14.94 16 14 C 0.11 1.93 5.87 -4.98 -0.03 1.90 16 15 C 0.18 2.97 6.24 -82.63 -0.52 2.45 16 16 C -0.18 -2.66 9.68 -39.30 -0.38 -3.04 16 17 C 0.16 2.03 6.73 -38.82 -0.26 1.77 16 18 O -0.30 -3.30 10.18 -18.92 -0.19 -3.49 16 19 C 0.01 0.07 3.99 -25.65 -0.10 -0.03 16 20 C 0.02 0.17 9.05 37.61 0.34 0.51 16 21 O -0.37 -3.38 12.45 -35.23 -0.44 -3.82 16 22 C 0.05 0.33 9.05 37.61 0.34 0.67 16 23 C -0.27 -3.02 9.09 -39.30 -0.36 -3.38 16 24 C 0.14 1.72 11.17 -17.60 -0.20 1.52 16 25 N -0.50 -8.00 10.27 -9.55 -0.10 -8.10 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 1.36 7.07 -51.93 -0.37 0.99 16 28 H 0.04 0.88 7.74 -51.93 -0.40 0.48 16 29 H 0.01 0.23 7.84 -51.93 -0.41 -0.18 16 30 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.34 7.32 8.06 -39.29 -0.32 7.01 16 33 H 0.08 1.39 7.74 -51.93 -0.40 0.99 16 34 H 0.04 0.85 7.93 -51.92 -0.41 0.44 16 35 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 36 H 0.11 0.79 5.98 -51.93 -0.31 0.48 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.13 1.05 6.03 -52.48 -0.32 0.73 16 42 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -29.91 346.48 -8.12 -38.03 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.14 Total: 5.05 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.46 Total: -9.74 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.09 Total: -47.40 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.63 Total: -7.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.91 -8.12 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156580.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.569 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds